Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
20:07:23 (58925): wrapper (7.7.26015): starting
20:07:23 (58925): wrapper: running run_atlas (--nthreads 4)
[2025-10-07 20:07:23] Arguments: --nthreads 4
[2025-10-07 20:07:23] Threads: 4
[2025-10-07 20:07:23] Checking for CVMFS
[2025-10-07 20:07:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 20:07:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 20:07:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 20:07:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 20:07:30] 2.12.7.0 59179 0 25044 151454 3 1 2611577 4096001 0 130560 0 0 0.000 1291 1038 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-07 20:07:30] CVMFS is ok
[2025-10-07 20:07:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 20:07:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 20:07:30] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-07 20:07:30] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-07 20:07:30] Further information can be found at the LHC@home message board.
[2025-10-07 20:07:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 20:07:30] Checking for apptainer binary...
[2025-10-07 20:07:30] apptainer is not installed, using version from CVMFS
[2025-10-07 20:07:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 20:07:30] X570UD
[2025-10-07 20:07:30] apptainer works
[2025-10-07 20:07:30] Set ATHENA_PROC_NUMBER=4
[2025-10-07 20:07:30] Set ATHENA_CORE_NUMBER=4
[2025-10-07 20:07:30] Starting ATLAS job with PandaID=6830520708
[2025-10-07 20:07:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc3/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 21:36:04]  *** The last 200 lines of the pilot log: ***
[2025-10-07 21:36:04] 2025-10-08 03:35:18,322 | INFO     | sufficient remaining disk space (254052139008 B)
[2025-10-07 21:36:04] 2025-10-08 03:35:18,322 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-07 21:36:04] 2025-10-08 03:35:18,323 | INFO     | size of work directory /var/lib/boinc3/slots/0/PanDA_Pilot-6830520708: 2738922 B (within 2537553920 B limit)
[2025-10-07 21:36:04] 2025-10-08 03:35:18,323 | INFO     | pfn file=/var/lib/boinc3/slots/0/PanDA_Pilot-6830520708/HITS.46376905._069935.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-07 21:36:04] 2025-10-08 03:35:18,323 | INFO     | total size of present files: 0 B (workdir size: 2738922 B)
[2025-10-07 21:36:04] 2025-10-08 03:35:18,323 | INFO     | output file size check: skipping output file /var/lib/boinc3/slots/0/PanDA_Pilot-6830520708/HITS.46376905._069935.pool.root.1 since it does not exist
[2025-10-07 21:36:04] 2025-10-08 03:35:18,423 | INFO     | number of running child processes to parent process 70563: 1
[2025-10-07 21:36:04] 2025-10-08 03:35:18,423 | INFO     | maximum number of monitored processes: 6
[2025-10-07 21:36:04] 2025-10-08 03:35:18,570 | INFO     | time since job start (5248s) is within the limit (172800.0s)
[2025-10-07 21:36:04] 2025-10-08 03:35:19,040 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 21:36:04] 2025-10-08 03:35:20,391 | INFO     | job 6830520708 has state=finished
[2025-10-07 21:36:04] 2025-10-08 03:35:20,391 | INFO     | preparing for final server update for job 6830520708 in state='finished'
[2025-10-07 21:36:04] 2025-10-08 03:35:20,578 | INFO     | time since job start (5250s) is within the limit (172800.0s)
[2025-10-07 21:36:04] 2025-10-08 03:35:20,681 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-07 21:36:04] 2025-10-08 03:35:20,682 | INFO     | this job has now completed (state=finished)
[2025-10-07 21:36:04] 2025-10-08 03:35:20,682 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 21:36:04] 2025-10-08 03:35:20,682 | INFO     | log transfer has been attempted: DONE
[2025-10-07 21:36:04] 2025-10-08 03:35:20,682 | INFO     | job 6830520708 has finished - writing final server update
[2025-10-07 21:36:04] 2025-10-08 03:35:20,682 | INFO     | total number of processed events: 400 (read)
[2025-10-07 21:36:04] 2025-10-08 03:35:20,686 | INFO     | executing command: lscpu
[2025-10-07 21:36:04] 2025-10-08 03:35:20,727 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 21:36:04] 2025-10-08 03:35:20,929 | INFO     | monitor loop #400: job 0:6830520708 is in state 'finished'
[2025-10-07 21:36:04] 2025-10-08 03:35:20,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 21:36:04] 2025-10-08 03:35:22,583 | INFO     | time since job start (5252s) is within the limit (172800.0s)
[2025-10-07 21:36:04] 2025-10-08 03:35:23,434 | INFO     | monitor loop #401: job 0:6830520708 is in state 'finished'
[2025-10-07 21:36:04] 2025-10-08 03:35:23,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 21:36:04] 2025-10-08 03:35:24,588 | INFO     | time since job start (5254s) is within the limit (172800.0s)
[2025-10-07 21:36:04] 2025-10-08 03:35:25,717 | INFO     | PID=63581 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 21:36:04] 2025-10-08 03:35:25,717 | INFO     | .. there are 2 such processes running
[2025-10-07 21:36:04] 2025-10-08 03:35:25,939 | INFO     | monitor loop #402: job 0:6830520708 is in state 'finished'
[2025-10-07 21:36:04] 2025-10-08 03:35:25,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 21:36:04] 2025-10-08 03:35:26,718 | INFO     | time since job start (5256s) is within the limit (172800.0s)
[2025-10-07 21:36:04] 2025-10-08 03:35:28,443 | INFO     | monitor loop #403: job 0:6830520708 is in state 'finished'
[2025-10-07 21:36:04] 2025-10-08 03:35:28,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 21:36:04] 2025-10-08 03:35:28,725 | INFO     | time since job start (5258s) is within the limit (172800.0s)
[2025-10-07 21:36:04] 2025-10-08 03:35:28,881 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 21:36:04] 2025-10-08 03:35:28,885 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4240.7575
[2025-10-07 21:36:04] 2025-10-08 03:35:28,888 | INFO     | using path: /var/lib/boinc3/slots/0/PanDA_Pilot-6830520708/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 21:36:04] 2025-10-08 03:35:28,889 | INFO     | extracted standard info from prmon json
[2025-10-07 21:36:04] 2025-10-08 03:35:28,889 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 21:36:04] 2025-10-08 03:35:28,889 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 21:36:04] 2025-10-08 03:35:28,889 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 21:36:04] 2025-10-08 03:35:28,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 21:36:04] 2025-10-08 03:35:28,890 | INFO     | fitting pss+swap vs Time
[2025-10-07 21:36:04] 2025-10-08 03:35:28,890 | INFO     | sum of square deviations: 152858680.0
[2025-10-07 21:36:04] 2025-10-08 03:35:28,890 | INFO     | sum of deviations: -2642449667.0000005
[2025-10-07 21:36:04] 2025-10-08 03:35:28,890 | INFO     | mean x: 1759891980.0
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | mean y: 2373618.4430379746
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | -- intersect: 30425415191.921047
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | intersect: 30425415191.921047
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | chi2: 0.06697333233917971
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | -- intersect: 30425415191.921047
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | current memory leak: -17.29 B/s (using 79 data points, chi2=0.07)
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | could have reported an average CPU frequency of 4169 MHz (6 samples)
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | ..............................
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | . Timing measurements:
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | . get job = 0 s
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | . initial setup = 4 s
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | . payload setup = 6 s
[2025-10-07 21:36:04] 2025-10-08 03:35:28,891 | INFO     | . stage-in = 0 s
[2025-10-07 21:36:04] 2025-10-08 03:35:28,892 | INFO     | . payload execution = 5220 s
[2025-10-07 21:36:04] 2025-10-08 03:35:28,892 | INFO     | . stage-out = 0 s
[2025-10-07 21:36:04] 2025-10-08 03:35:28,892 | INFO     | . log creation = 0 s
[2025-10-07 21:36:04] 2025-10-08 03:35:28,892 | INFO     | ..............................
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | 
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | job summary report
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | --------------------------------------------------
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | PanDA job id: 6830520708
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | task id: 46376905
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | errors: (none)
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | pilot state: finished 
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | transexitcode: 0
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | exeerrorcode: 0
[2025-10-07 21:36:04] 2025-10-08 03:35:29,244 | INFO     | exeerrordiag: 
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | exitcode: 0
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | exitmsg: OK
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | cpuconsumptiontime: 20021 s
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | nevents: 400
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | neventsw: 0
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | pid: 70563
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | pgrp: 70563
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | corecount: 4
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | event service: False
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | sizes: {0: 2348645, 1: 2348844, 5: 2349106, 11: 2349162, 5231: 2375677, 5232: 2384677, 5233: 2384889, 5243: 2385083}
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | --------------------------------------------------
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | 
[2025-10-07 21:36:04] 2025-10-08 03:35:29,245 | INFO     | executing command: ls -lF /var/lib/boinc3/slots/0
[2025-10-07 21:36:04] 2025-10-08 03:35:29,260 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,260 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | job 6830520708 has completed (purged errors)
[2025-10-07 21:36:04] 2025-10-08 03:35:29,261 | INFO     | overall cleanup function is called
[2025-10-07 21:36:04] 2025-10-08 03:35:30,276 | INFO     | --- collectZombieJob: --- 10, [70563]
[2025-10-07 21:36:04] 2025-10-08 03:35:30,277 | INFO     | zombie collector waiting for pid 70563
[2025-10-07 21:36:04] 2025-10-08 03:35:30,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 21:36:04] 2025-10-08 03:35:30,277 | INFO     | collected zombie processes
[2025-10-07 21:36:04] 2025-10-08 03:35:30,277 | INFO     | will attempt to kill all subprocesses of pid=70563
[2025-10-07 21:36:04] 2025-10-08 03:35:30,366 | INFO     | process IDs to be killed: [70563] (in reverse order)
[2025-10-07 21:36:04] 2025-10-08 03:35:30,434 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 21:36:04] 2025-10-08 03:35:30,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 21:36:04] 2025-10-08 03:35:30,438 | INFO     | did not find any defunct processes belonging to 70563
[2025-10-07 21:36:04] 2025-10-08 03:35:30,441 | INFO     | did not find any defunct processes belonging to 70563
[2025-10-07 21:36:04] 2025-10-08 03:35:30,441 | INFO     | ready for new job
[2025-10-07 21:36:04] 2025-10-08 03:35:30,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 21:36:04] 2025-10-08 03:35:30,443 | INFO     | ***************************************
[2025-10-07 21:36:04] 2025-10-08 03:35:30,443 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 21:36:04] 2025-10-08 03:35:30,443 | INFO     | ***************************************
[2025-10-07 21:36:04] 2025-10-08 03:35:30,443 | INFO     | 
[2025-10-07 21:36:04] 2025-10-08 03:35:30,447 | INFO     | architecture information:
[2025-10-07 21:36:04] 2025-10-08 03:35:30,448 | INFO     | executing command: cat /etc/os-release
[2025-10-07 21:36:04] 2025-10-08 03:35:30,470 | INFO     | cat /etc/os-release:
[2025-10-07 21:36:04] NAME="CentOS Linux"
[2025-10-07 21:36:04] VERSION="7 (Core)"
[2025-10-07 21:36:04] ID="centos"
[2025-10-07 21:36:04] ID_LIKE="rhel fedora"
[2025-10-07 21:36:04] VERSION_ID="7"
[2025-10-07 21:36:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 21:36:04] ANSI_COLOR="0;31"
[2025-10-07 21:36:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 21:36:04] HOME_URL="https://www.centos.org/"
[2025-10-07 21:36:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 21:36:04] 
[2025-10-07 21:36:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 21:36:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 21:36:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 21:36:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 21:36:04] 
[2025-10-07 21:36:04] 2025-10-08 03:35:30,470 | INFO     | ***************************************
[2025-10-07 21:36:04] 2025-10-08 03:35:30,972 | INFO     | executing command: df -mP /var/lib/boinc3/slots/0
[2025-10-07 21:36:04] 2025-10-08 03:35:30,998 | INFO     | sufficient remaining disk space (254051090432 B)
[2025-10-07 21:36:04] 2025-10-08 03:35:30,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 21:36:04] 2025-10-08 03:35:30,999 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 21:36:04] 2025-10-08 03:35:30,999 | INFO     | update_server=False
[2025-10-07 21:36:04] 2025-10-08 03:35:30,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 21:36:04] 2025-10-08 03:35:30,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 21:36:04] 2025-10-08 03:35:31,005 | INFO     | all data control threads have been joined
[2025-10-07 21:36:04] 2025-10-08 03:35:31,109 | INFO     | all payload control threads have been joined
[2025-10-07 21:36:04] 2025-10-08 03:35:31,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 21:36:04] 2025-10-08 03:35:31,951 | INFO     | aborting loop
[2025-10-07 21:36:04] 2025-10-08 03:35:32,004 | INFO     | [job] retrieve thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:32,010 | INFO     | [data] control thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:32,048 | INFO     | all job control threads have been joined
[2025-10-07 21:36:04] 2025-10-08 03:35:32,100 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:32,112 | INFO     | [payload] control thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:32,278 | INFO     | [payload] validate_post thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:32,537 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:32,957 | INFO     | [job] job monitor thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:33,004 | INFO     | [data] copytool_out thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:33,052 | INFO     | [job] control thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:33,183 | INFO     | [job] validate thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:33,295 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:33,392 | INFO     | [payload] failed_post thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:33,441 | INFO     | [data] copytool_in thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:33,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 21:36:04] 2025-10-08 03:35:34,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 21:36:04] 2025-10-08 03:35:34,947 | INFO     | [job] queue monitor thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:38,109 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:41,845 | INFO     | job.realtimelogging is not enabled
[2025-10-07 21:36:04] 2025-10-08 03:35:42,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 21:36:04] 2025-10-08 03:35:57,924 | INFO     | [monitor] cgroup control has ended
[2025-10-07 21:36:04] 2025-10-08 03:35:59,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128768546531136)>', '<ExcThread(monitor, started 128768068802304)>']
[2025-10-07 21:36:04] 2025-10-08 03:36:01,955 | INFO     | PID=63581 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 21:36:04] 2025-10-08 03:36:01,955 | INFO     | .. there are 2 such processes running
[2025-10-07 21:36:04] 2025-10-08 03:36:01,956 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 21:36:04] 2025-10-08 03:36:01,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 21:36:04] 2025-10-08 03:36:01,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 21:36:04] 2025-10-08 03:36:01,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 21:36:04] 2025-10-08 03:36:01,956 | INFO     | [monitor] control thread has ended
[2025-10-07 21:36:04] 2025-10-08 03:36:04,312 | INFO     | all workflow threads have been joined
[2025-10-07 21:36:04] 2025-10-08 03:36:04,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 21:36:04] 2025-10-08 03:36:04,313 | INFO     | traces error code: 0
[2025-10-07 21:36:04] 2025-10-08 03:36:04,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 21:36:04] 2025-10-08 03:36:04,394 [wrapper] ==== pilot stdout END ====
[2025-10-07 21:36:04] 2025-10-08 03:36:04,396 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 21:36:04] 2025-10-08 03:36:04,399 [wrapper] pilotpid: 63581
[2025-10-07 21:36:04] 2025-10-08 03:36:04,405 [wrapper] Pilot exit status: 0
[2025-10-07 21:36:04] 2025-10-08 03:36:04,427 [wrapper] pandaids: 6830520708
[2025-10-07 21:36:04] 2025-10-08 03:36:04,461 [wrapper] cleanup supervisor_pilot  134511 63582
[2025-10-07 21:36:04] 2025-10-08 03:36:04,465 [wrapper] Test setup, not cleaning
[2025-10-07 21:36:04] 2025-10-08 03:36:04,472 [wrapper] apfmon messages muted
[2025-10-07 21:36:04] 2025-10-08 03:36:04,476 [wrapper] ==== wrapper stdout END ====
[2025-10-07 21:36:04] 2025-10-08 03:36:04,480 [wrapper] ==== wrapper stderr END ====
[2025-10-07 21:36:04]  *** Error codes and diagnostics ***
[2025-10-07 21:36:04]     "exeErrorCode": 0,
[2025-10-07 21:36:04]     "exeErrorDiag": "",
[2025-10-07 21:36:04]     "pilotErrorCode": 0,
[2025-10-07 21:36:04]     "pilotErrorDiag": "",
[2025-10-07 21:36:04]  *** Listing of results directory ***
[2025-10-07 21:36:04] total 397408
[2025-10-07 21:36:04] -rw-r--r-- 1 boinc boinc    552446 Oct  4 16:48 pilot3.tar.gz
[2025-10-07 21:36:04] -rw-r--r-- 1 boinc boinc      5112 Oct  4 17:02 queuedata.json
[2025-10-07 21:36:04] -rwx------ 1 boinc boinc     36292 Oct  4 17:03 runpilot2-wrapper.sh
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc       100 Oct  7 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 21:36:04] -rwxr-xr-x 1 boinc boinc      7986 Oct  7 20:07 run_atlas
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc       105 Oct  7 20:07 job.xml
[2025-10-07 21:36:04] -rw-r--r-- 2 boinc boinc 216224391 Oct  7 20:07 EVNT.46376901._002537.pool.root.1
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc      9738 Oct  7 20:07 init_data.xml
[2025-10-07 21:36:04] -rw-r--r-- 2 boinc boinc     15120 Oct  7 20:07 start_atlas.sh
[2025-10-07 21:36:04] drwxrwx--x 2 boinc boinc      4096 Oct  7 20:07 shared
[2025-10-07 21:36:04] -rw-r--r-- 2 boinc boinc    565603 Oct  7 20:07 input.tar.gz
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc         0 Oct  7 20:07 boinc_lockfile
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc      2518 Oct  7 20:07 pandaJob.out
[2025-10-07 21:36:04] -rw------- 1 boinc boinc    979833 Oct  7 20:07 agis_schedconf.cvmfs.json
[2025-10-07 21:36:04] -rw------- 1 boinc boinc   1560401 Oct  7 20:07 agis_ddmendpoints.agis.ALL.json
[2025-10-07 21:36:04] drwx------ 4 boinc boinc      4096 Oct  7 20:07 pilot3
[2025-10-07 21:36:04] -rw------- 1 boinc boinc 184746181 Oct  7 21:34 HITS.46376905._069935.pool.root.1
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc       529 Oct  7 21:35 boinc_task_state.xml
[2025-10-07 21:36:04] -rw------- 1 boinc boinc      1030 Oct  7 21:35 memory_monitor_summary.json
[2025-10-07 21:36:04] -rw------- 1 boinc boinc    274245 Oct  7 21:35 log.46376905._069935.job.log.tgz.1
[2025-10-07 21:36:04] -rw------- 1 boinc boinc        95 Oct  7 21:35 pilot_heartbeat.json
[2025-10-07 21:36:04] -rw------- 1 boinc boinc      7746 Oct  7 21:35 heartbeat.json
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc      8192 Oct  7 21:35 boinc_mmap_file
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc        27 Oct  7 21:35 wrapper_checkpoint.txt
[2025-10-07 21:36:04] -rw------- 1 boinc boinc      4895 Oct  7 21:36 pilotlog.txt
[2025-10-07 21:36:04] -rw------- 1 boinc boinc    762034 Oct  7 21:36 log.46376905._069935.job.log.1
[2025-10-07 21:36:04] -rw------- 1 boinc boinc       357 Oct  7 21:36 output.list
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc       620 Oct  7 21:36 runtime_log
[2025-10-07 21:36:04] -rw------- 1 boinc boinc   1054720 Oct  7 21:36 result.tar.gz
[2025-10-07 21:36:04] -rw------- 1 boinc boinc       657 Oct  7 21:36 WbmNDmZSQP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmghEMDmJp4s3m.diag
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc      8699 Oct  7 21:36 runtime_log.err
[2025-10-07 21:36:04] -rw-rw-r-- 1 boinc boinc     22553 Oct  7 21:36 stderr.txt
[2025-10-07 21:36:04] HITS file was successfully produced:
[2025-10-07 21:36:04] -rw------- 1 boinc boinc 184746181 Oct  7 21:34 shared/HITS.pool.root.1
[2025-10-07 21:36:04]  *** Contents of shared directory: ***
[2025-10-07 21:36:04] total 393192
[2025-10-07 21:36:04] -rw-r--r-- 2 boinc boinc 216224391 Oct  7 20:07 ATLAS.root_0
[2025-10-07 21:36:04] -rw-r--r-- 2 boinc boinc     15120 Oct  7 20:07 start_atlas.sh
[2025-10-07 21:36:04] -rw-r--r-- 2 boinc boinc    565603 Oct  7 20:07 input.tar.gz
[2025-10-07 21:36:04] -rw------- 1 boinc boinc 184746181 Oct  7 21:34 HITS.pool.root.1
[2025-10-07 21:36:04] -rw------- 1 boinc boinc   1054720 Oct  7 21:36 result.tar.gz
21:36:06 (58925): run_atlas exited; CPU time 20049.315656
21:36:06 (58925): called boinc_finish(0)

</stderr_txt>
]]>

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