Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:43:36 (3636618): wrapper (7.7.26015): starting
21:43:36 (3636618): wrapper: running run_atlas (--nthreads 10)
[2025-10-07 21:43:36] Arguments: --nthreads 10
[2025-10-07 21:43:36] Threads: 10
[2025-10-07 21:43:36] Checking for CVMFS
[2025-10-07 21:43:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 21:43:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 21:43:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 21:43:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 21:43:37] 2.13.2.0 1602499 117404 311780 151453 1 276 36984613 40960000 17163 16776704 0 282031735 99.725 194202315 35314 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-07 21:43:37] CVMFS is ok
[2025-10-07 21:43:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 21:43:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 21:43:37] Further information can be found at the LHC@home message board.
[2025-10-07 21:43:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 21:43:37] Checking for apptainer binary...
[2025-10-07 21:43:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 21:43:37] Running /usr/bin/apptainer --version
[2025-10-07 21:43:37] apptainer version 1.4.2-1.el9
[2025-10-07 21:43:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 21:43:37] c-212-17.aglt2.org
[2025-10-07 21:43:37] apptainer works
[2025-10-07 21:43:37] Set ATHENA_PROC_NUMBER=10
[2025-10-07 21:43:37] Set ATHENA_CORE_NUMBER=10
[2025-10-07 21:43:37] Starting ATLAS job with PandaID=6832635137
[2025-10-07 21:43:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 23:05:01]  *** The last 200 lines of the pilot log: ***
[2025-10-07 23:05:01] 2025-10-08 03:03:36,431 | INFO     | preparing for final server update for job 6832635137 in state='finished'
[2025-10-07 23:05:01] 2025-10-08 03:03:36,431 | INFO     | this job has now completed (state=finished)
[2025-10-07 23:05:01] 2025-10-08 03:03:36,431 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 23:05:01] 2025-10-08 03:03:36,431 | INFO     | log transfer has been attempted: DONE
[2025-10-07 23:05:01] 2025-10-08 03:03:36,432 | INFO     | job 6832635137 has finished - writing final server update
[2025-10-07 23:05:01] 2025-10-08 03:03:36,432 | INFO     | total number of processed events: 400 (read)
[2025-10-07 23:05:01] 2025-10-08 03:03:36,448 | INFO     | executing command: lscpu
[2025-10-07 23:05:01] 2025-10-08 03:03:36,577 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 23:05:01] 2025-10-08 03:03:36,757 | INFO     | time since job start (4789s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:37,349 | WARNING  | process 3659293 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 23:05:01] 2025-10-08 03:03:37,354 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6832635137/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 23:05:01] 2025-10-08 03:03:37,355 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6832635137/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 23:05:01] 2025-10-08 03:03:37,356 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3549933 B
[2025-10-07 23:05:01] 2025-10-08 03:03:37,356 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15789 B
[2025-10-07 23:05:01] 2025-10-08 03:03:37,356 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-07 23:05:01] 2025-10-08 03:03:38,764 | INFO     | time since job start (4791s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:40,771 | INFO     | time since job start (4793s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:42,779 | INFO     | time since job start (4795s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:44,793 | INFO     | time since job start (4797s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:46,802 | INFO     | time since job start (4799s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:49,332 | INFO     | PID=3642338 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 23:05:01] 2025-10-08 03:03:49,339 | INFO     | .. there are 14 such processes running
[2025-10-07 23:05:01] 2025-10-08 03:03:50,341 | INFO     | time since job start (4803s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:52,348 | INFO     | time since job start (4805s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:54,355 | INFO     | time since job start (4807s) is within the limit (172800.0s)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,912 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 23:05:01] 2025-10-08 03:03:55,962 | INFO     | sufficient remaining disk space (129360723968 B)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,962 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,963 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3219.8368020833336
[2025-10-07 23:05:01] 2025-10-08 03:03:55,979 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6832635137: 3849074 B (within 2537553920 B limit)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,979 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6832635137/HITS.46376905._110262.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,979 | INFO     | total size of present files: 0 B (workdir size: 3849074 B)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,979 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6832635137/HITS.46376905._110262.pool.root.1 since it does not exist
[2025-10-07 23:05:01] 2025-10-08 03:03:55,987 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6832635137/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,988 | INFO     | extracted standard info from prmon json
[2025-10-07 23:05:01] 2025-10-08 03:03:55,988 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 23:05:01] 2025-10-08 03:03:55,988 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 23:05:01] 2025-10-08 03:03:55,988 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 23:05:01] 2025-10-08 03:03:55,989 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 23:05:01] 2025-10-08 03:03:55,990 | INFO     | fitting pss+swap vs Time
[2025-10-07 23:05:01] 2025-10-08 03:03:55,990 | INFO     | sum of square deviations: 110987198.95774652
[2025-10-07 23:05:01] 2025-10-08 03:03:55,990 | INFO     | sum of deviations: -4075039468.3943644
[2025-10-07 23:05:01] 2025-10-08 03:03:55,990 | INFO     | mean x: 1759890293.3943663
[2025-10-07 23:05:01] 2025-10-08 03:03:55,990 | INFO     | mean y: 2629703.0140845072
[2025-10-07 23:05:01] 2025-10-08 03:03:55,990 | INFO     | -- intersect: 64619292462.08109
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | intersect: 64619292462.08109
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | chi2: 0.0349622613877196
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | -- intersect: 64619292462.08109
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | current memory leak: -36.72 B/s (using 71 data points, chi2=0.03)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | could have reported an average CPU frequency of 3177 MHz (6 samples)
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | ..............................
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | . Timing measurements:
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | . get job = 0 s
[2025-10-07 23:05:01] 2025-10-08 03:03:55,991 | INFO     | . initial setup = 2 s
[2025-10-07 23:05:01] 2025-10-08 03:03:56,000 | INFO     | . payload setup = 5 s
[2025-10-07 23:05:01] 2025-10-08 03:03:56,000 | INFO     | . stage-in = 0 s
[2025-10-07 23:05:01] 2025-10-08 03:03:56,000 | INFO     | . payload execution = 4759 s
[2025-10-07 23:05:01] 2025-10-08 03:03:56,000 | INFO     | . stage-out = 2 s
[2025-10-07 23:05:01] 2025-10-08 03:03:56,000 | INFO     | . log creation = 0 s
[2025-10-07 23:05:01] 2025-10-08 03:03:56,000 | INFO     | ..............................
[2025-10-07 23:05:01] 2025-10-08 03:03:56,100 | INFO     | 
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | job summary report
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | --------------------------------------------------
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | PanDA job id: 6832635137
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | task id: 46376905
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | errors: (none)
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | pilot state: finished 
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | transexitcode: 0
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | exeerrorcode: 0
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | exeerrordiag: 
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | exitcode: 0
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | exitmsg: OK
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | cpuconsumptiontime: 26846 s
[2025-10-07 23:05:01] 2025-10-08 03:03:56,101 | INFO     | nevents: 400
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | neventsw: 0
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | pid: 3659293
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | pgrp: 3659293
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | corecount: 10
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | event service: False
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | sizes: {0: 2348769, 4: 2349031, 11: 2349059, 4769: 2375370, 4771: 2384368, 4773: 2384424, 4793: 2384774}
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | --------------------------------------------------
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | 
[2025-10-07 23:05:01] 2025-10-08 03:03:56,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 23:05:01] 2025-10-08 03:03:56,257 | INFO     | job 6832635137 has completed (purged errors)
[2025-10-07 23:05:01] 2025-10-08 03:03:56,258 | INFO     | overall cleanup function is called
[2025-10-07 23:05:01] 2025-10-08 03:03:57,187 | INFO     | number of running child processes to parent process 3659293: 1
[2025-10-07 23:05:01] 2025-10-08 03:03:57,187 | INFO     | maximum number of monitored processes: 6
[2025-10-07 23:05:01] 2025-10-08 03:03:57,187 | INFO     | aborting job monitoring since job object (job id=6832635137) has expired
[2025-10-07 23:05:01] 2025-10-08 03:03:57,281 | INFO     | --- collectZombieJob: --- 10, [3659293]
[2025-10-07 23:05:01] 2025-10-08 03:03:57,282 | INFO     | zombie collector waiting for pid 3659293
[2025-10-07 23:05:01] 2025-10-08 03:03:57,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 23:05:01] 2025-10-08 03:03:57,282 | INFO     | collected zombie processes
[2025-10-07 23:05:01] 2025-10-08 03:03:57,282 | INFO     | will attempt to kill all subprocesses of pid=3659293
[2025-10-07 23:05:01] 2025-10-08 03:03:58,584 | INFO     | process IDs to be killed: [3659293] (in reverse order)
[2025-10-07 23:05:01] 2025-10-08 03:03:58,965 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 23:05:01] 2025-10-08 03:03:58,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 23:05:01] 2025-10-08 03:03:58,979 | INFO     | did not find any defunct processes belonging to 3659293
[2025-10-07 23:05:01] 2025-10-08 03:03:59,000 | INFO     | did not find any defunct processes belonging to 3659293
[2025-10-07 23:05:01] 2025-10-08 03:03:59,000 | INFO     | ready for new job
[2025-10-07 23:05:01] 2025-10-08 03:03:59,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 23:05:01] 2025-10-08 03:03:59,002 | INFO     | ***************************************
[2025-10-07 23:05:01] 2025-10-08 03:03:59,002 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 23:05:01] 2025-10-08 03:03:59,002 | INFO     | ***************************************
[2025-10-07 23:05:01] 2025-10-08 03:03:59,002 | INFO     | 
[2025-10-07 23:05:01] 2025-10-08 03:03:59,022 | INFO     | architecture information:
[2025-10-07 23:05:01] 2025-10-08 03:03:59,037 | INFO     | executing command: cat /etc/os-release
[2025-10-07 23:05:01] 2025-10-08 03:03:59,160 | INFO     | cat /etc/os-release:
[2025-10-07 23:05:01] NAME="CentOS Linux"
[2025-10-07 23:05:01] VERSION="7 (Core)"
[2025-10-07 23:05:01] ID="centos"
[2025-10-07 23:05:01] ID_LIKE="rhel fedora"
[2025-10-07 23:05:01] VERSION_ID="7"
[2025-10-07 23:05:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 23:05:01] ANSI_COLOR="0;31"
[2025-10-07 23:05:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 23:05:01] HOME_URL="https://www.centos.org/"
[2025-10-07 23:05:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 23:05:01] 
[2025-10-07 23:05:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 23:05:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 23:05:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 23:05:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 23:05:01] 
[2025-10-07 23:05:01] 2025-10-08 03:03:59,160 | INFO     | ***************************************
[2025-10-07 23:05:01] 2025-10-08 03:03:59,664 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-07 23:05:01] 2025-10-08 03:03:59,763 | INFO     | sufficient remaining disk space (129364918272 B)
[2025-10-07 23:05:01] 2025-10-08 03:03:59,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 23:05:01] 2025-10-08 03:03:59,764 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 23:05:01] 2025-10-08 03:03:59,764 | INFO     | update_server=False
[2025-10-07 23:05:01] 2025-10-08 03:03:59,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 23:05:01] 2025-10-08 03:03:59,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 23:05:01] 2025-10-08 03:04:00,500 | INFO     | all payload control threads have been joined
[2025-10-07 23:05:01] 2025-10-08 03:04:00,526 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 23:05:01] 2025-10-08 03:04:00,605 | INFO     | all job control threads have been joined
[2025-10-07 23:05:01] 2025-10-08 03:04:00,685 | INFO     | all data control threads have been joined
[2025-10-07 23:05:01] 2025-10-08 03:04:00,697 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 23:05:01] 2025-10-08 03:04:00,698 | INFO     | aborting loop
[2025-10-07 23:05:01] 2025-10-08 03:04:00,772 | INFO     | [job] retrieve thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:00,775 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:00,818 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 23:05:01] 2025-10-08 03:04:01,341 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,507 | INFO     | [payload] control thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,613 | INFO     | [job] control thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,692 | INFO     | [data] control thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,704 | INFO     | [job] job monitor thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,772 | INFO     | [data] copytool_out thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,848 | INFO     | [data] copytool_in thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:01,895 | INFO     | [job] validate thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:02,143 | INFO     | [job] queue monitor thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:02,217 | INFO     | [payload] failed_post thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:02,217 | INFO     | [payload] validate_post thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:04,536 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:10,575 | INFO     | job.realtimelogging is not enabled
[2025-10-07 23:05:01] 2025-10-08 03:04:11,582 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 23:05:01] 2025-10-08 03:04:26,464 | INFO     | 4811s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-07 23:05:01] 2025-10-08 03:04:29,802 | INFO     | PID=3642338 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 23:05:01] 2025-10-08 03:04:29,802 | INFO     | .. there are 14 such processes running
[2025-10-07 23:05:01] 2025-10-08 03:04:29,806 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 23:05:01] 2025-10-08 03:04:29,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 23:05:01] 2025-10-08 03:04:29,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 23:05:01] 2025-10-08 03:04:55,336 | INFO     | [monitor] cgroup control has ended
[2025-10-07 23:05:01] 2025-10-08 03:04:55,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583870760768)>', '<ExcThread(monitor, started 140583372830464)>']
[2025-10-07 23:05:01] 2025-10-08 03:04:55,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 23:05:01] 2025-10-08 03:04:55,963 | INFO     | [monitor] control thread has ended
[2025-10-07 23:05:01] 2025-10-08 03:05:00,379 | INFO     | all workflow threads have been joined
[2025-10-07 23:05:01] 2025-10-08 03:05:00,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 23:05:01] 2025-10-08 03:05:00,380 | INFO     | traces error code: 0
[2025-10-07 23:05:01] 2025-10-08 03:05:00,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 23:05:01] 2025-10-08 03:05:00,935 [wrapper] ==== pilot stdout END ====
[2025-10-07 23:05:01] 2025-10-08 03:05:00,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 23:05:01] 2025-10-08 03:05:00,988 [wrapper] pilotpid: 3642338
[2025-10-07 23:05:01] 2025-10-08 03:05:01,026 [wrapper] Pilot exit status: 0
[2025-10-07 23:05:01] 2025-10-08 03:05:01,156 [wrapper] pandaids: 6832635137
[2025-10-07 23:05:01] 2025-10-08 03:05:01,598 [wrapper] cleanup supervisor_pilot 3767619 3642339
[2025-10-07 23:05:01] 2025-10-08 03:05:01,604 [wrapper] Test setup, not cleaning
[2025-10-07 23:05:01] 2025-10-08 03:05:01,606 [wrapper] apfmon messages muted
[2025-10-07 23:05:01] 2025-10-08 03:05:01,609 [wrapper] ==== wrapper stdout END ====
[2025-10-07 23:05:01] 2025-10-08 03:05:01,611 [wrapper] ==== wrapper stderr END ====
[2025-10-07 23:05:01]  *** Error codes and diagnostics ***
[2025-10-07 23:05:01]     "exeErrorCode": 0,
[2025-10-07 23:05:01]     "exeErrorDiag": "",
[2025-10-07 23:05:01]     "pilotErrorCode": 0,
[2025-10-07 23:05:01]     "pilotErrorDiag": "",
[2025-10-07 23:05:01]  *** Listing of results directory ***
[2025-10-07 23:05:01] total 384328
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas    552446 Oct  6 06:49 pilot3.tar.gz
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas      5112 Oct  6 07:12 queuedata.json
[2025-10-07 23:05:01] -rwx------. 1 boincer umatlas     36292 Oct  6 07:13 runpilot2-wrapper.sh
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas       100 Oct  7 21:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 23:05:01] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 21:43 run_atlas
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas       105 Oct  7 21:43 job.xml
[2025-10-07 23:05:01] -rw-r--r--. 2 boincer umatlas 213599524 Oct  7 21:43 EVNT.46376901._004088.pool.root.1
[2025-10-07 23:05:01] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 21:43 shared
[2025-10-07 23:05:01] -rw-r--r--. 2 boincer umatlas    565605 Oct  7 21:43 input.tar.gz
[2025-10-07 23:05:01] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 21:43 start_atlas.sh
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas         0 Oct  7 21:43 boinc_lockfile
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas      2520 Oct  7 21:43 pandaJob.out
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas    979833 Oct  7 21:43 agis_schedconf.cvmfs.json
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas   1560401 Oct  7 21:43 agis_ddmendpoints.agis.ALL.json
[2025-10-07 23:05:01] drwx------. 4 boincer umatlas      4096 Oct  7 21:43 pilot3
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas 173985933 Oct  7 23:02 HITS.46376905._110262.pool.root.1
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas       529 Oct  7 23:02 boinc_task_state.xml
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas      1043 Oct  7 23:03 memory_monitor_summary.json
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas    353740 Oct  7 23:03 log.46376905._110262.job.log.tgz.1
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas      7772 Oct  7 23:03 heartbeat.json
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas        95 Oct  7 23:04 pilot_heartbeat.json
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas      6946 Oct  7 23:04 init_data.xml
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 23:05 boinc_mmap_file
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas      5012 Oct  7 23:05 pilotlog.txt
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas        27 Oct  7 23:05 wrapper_checkpoint.txt
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas    682045 Oct  7 23:05 log.46376905._110262.job.log.1
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas       357 Oct  7 23:05 output.list
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas       620 Oct  7 23:05 runtime_log
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas   1054720 Oct  7 23:05 result.tar.gz
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas      8705 Oct  7 23:05 runtime_log.err
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas       652 Oct  7 23:05 AYELDm0KyP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtJTNDmn0M4Wo.diag
[2025-10-07 23:05:01] -rw-r--r--. 1 boincer umatlas     22521 Oct  7 23:05 stderr.txt
[2025-10-07 23:05:01] HITS file was successfully produced:
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas 173985933 Oct  7 23:02 shared/HITS.pool.root.1
[2025-10-07 23:05:01]  *** Contents of shared directory: ***
[2025-10-07 23:05:01] total 380116
[2025-10-07 23:05:01] -rw-r--r--. 2 boincer umatlas 213599524 Oct  7 21:43 ATLAS.root_0
[2025-10-07 23:05:01] -rw-r--r--. 2 boincer umatlas    565605 Oct  7 21:43 input.tar.gz
[2025-10-07 23:05:01] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 21:43 start_atlas.sh
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas 173985933 Oct  7 23:02 HITS.pool.root.1
[2025-10-07 23:05:01] -rw-------. 1 boincer umatlas   1054720 Oct  7 23:05 result.tar.gz
23:05:03 (3636618): run_atlas exited; CPU time 26892.860891
23:05:03 (3636618): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN