Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:17:00 (1403178): wrapper (7.7.26015): starting
17:17:00 (1403178): wrapper: running run_atlas (--nthreads 4)
[2025-10-08 17:17:00] Arguments: --nthreads 4
[2025-10-08 17:17:00] Threads: 4
[2025-10-08 17:17:00] Checking for CVMFS
[2025-10-08 17:17:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 17:17:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 17:17:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 17:17:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 17:17:01] 2.13.2.0 922105 4052 51012 151459 2 188 2965874 6144000 2743 130560 0 9814127 99.997 121482 127 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-08 17:17:01] CVMFS is ok
[2025-10-08 17:17:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 17:17:01] Checking for apptainer binary...
[2025-10-08 17:17:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 17:17:01] Running /usr/bin/apptainer --version
[2025-10-08 17:17:01] apptainer version 1.4.0
[2025-10-08 17:17:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 17:17:02] Zen
[2025-10-08 17:17:02] apptainer works
[2025-10-08 17:17:02] Set ATHENA_PROC_NUMBER=4
[2025-10-08 17:17:02] Set ATHENA_CORE_NUMBER=4
[2025-10-08 17:17:02] Starting ATLAS job with PandaID=6833170282
[2025-10-08 17:17:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 18:55:30]  *** The last 200 lines of the pilot log: ***
[2025-10-08 18:55:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-08 18:55:30]  replicas=None
[2025-10-08 18:55:30]  scope=mc23_13p6TeV
[2025-10-08 18:55:30]  status=None
[2025-10-08 18:55:30]  status_code=0
[2025-10-08 18:55:30]  storage_token=
[2025-10-08 18:55:30]  surl=/home/michael/Boinc/BOINC/slots/2/PanDA_Pilot-6833170282/log.46376905._129202.job.log.tgz.1
[2025-10-08 18:55:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/35/log.46376905._129202.job.log.tgz.1
[2025-10-08 18:55:30]  workdir=None
[2025-10-08 18:55:30] ]
[2025-10-08 18:55:30] 2025-10-08 07:54:52,591 | INFO     | transferring file log.46376905._129202.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/2/PanDA_Pilot-6833170282/log.46376905._129202.job.log.tgz.1 to /home/mich
[2025-10-08 18:55:30] 2025-10-08 07:54:52,591 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/2/PanDA_Pilot-6833170282/log.46376905._129202.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/2/lo
[2025-10-08 18:55:30] 2025-10-08 07:54:52,608 | INFO     | adding to output.list: log.46376905._129202.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/35/log.46376905._129202.job.log.tg
[2025-10-08 18:55:30] 2025-10-08 07:54:52,609 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 18:55:30] 2025-10-08 07:54:52,609 | INFO     | summary of transferred files:
[2025-10-08 18:55:30] 2025-10-08 07:54:52,609 | INFO     |  -- lfn=log.46376905._129202.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 18:55:30] 2025-10-08 07:54:52,609 | INFO     | stage-out finished correctly
[2025-10-08 18:55:30] 2025-10-08 07:54:52,913 | INFO     | time since job start (5859s) is within the limit (172800.0s)
[2025-10-08 18:55:30] 2025-10-08 07:54:53,314 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 18:55:30] 2025-10-08 07:54:54,136 | INFO     | monitor loop #443: job 0:6833170282 is in state 'finished'
[2025-10-08 18:55:30] 2025-10-08 07:54:54,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 18:55:30] 2025-10-08 07:54:54,916 | INFO     | time since job start (5861s) is within the limit (172800.0s)
[2025-10-08 18:55:30] 2025-10-08 07:54:55,240 | INFO     | job 6833170282 has state=finished
[2025-10-08 18:55:30] 2025-10-08 07:54:55,240 | INFO     | preparing for final server update for job 6833170282 in state='finished'
[2025-10-08 18:55:30] 2025-10-08 07:54:55,241 | INFO     | this job has now completed (state=finished)
[2025-10-08 18:55:30] 2025-10-08 07:54:55,241 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 18:55:30] 2025-10-08 07:54:55,241 | INFO     | log transfer has been attempted: DONE
[2025-10-08 18:55:30] 2025-10-08 07:54:55,241 | INFO     | job 6833170282 has finished - writing final server update
[2025-10-08 18:55:30] 2025-10-08 07:54:55,241 | INFO     | total number of processed events: 400 (read)
[2025-10-08 18:55:30] 2025-10-08 07:54:55,242 | INFO     | executing command: lscpu
[2025-10-08 18:55:30] 2025-10-08 07:54:55,271 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 18:55:30] 2025-10-08 07:54:56,639 | INFO     | monitor loop #444: job 0:6833170282 is in state 'finished'
[2025-10-08 18:55:30] 2025-10-08 07:54:56,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 18:55:30] 2025-10-08 07:54:56,921 | INFO     | time since job start (5863s) is within the limit (172800.0s)
[2025-10-08 18:55:30] 2025-10-08 07:54:58,052 | INFO     | PID=1406986 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 18:55:30] 2025-10-08 07:54:58,052 | INFO     | .. there are 4 such processes running
[2025-10-08 18:55:30] 2025-10-08 07:54:58,141 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 18:55:30] 2025-10-08 07:54:58,144 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4124.892333333334
[2025-10-08 18:55:30] 2025-10-08 07:54:58,147 | INFO     | using path: /home/michael/Boinc/BOINC/slots/2/PanDA_Pilot-6833170282/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 18:55:30] 2025-10-08 07:54:58,148 | INFO     | extracted standard info from prmon json
[2025-10-08 18:55:30] 2025-10-08 07:54:58,148 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 18:55:30] 2025-10-08 07:54:58,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 18:55:30] 2025-10-08 07:54:58,149 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 18:55:30] 2025-10-08 07:54:58,149 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 18:55:30] 2025-10-08 07:54:58,150 | INFO     | fitting pss+swap vs Time
[2025-10-08 18:55:30] 2025-10-08 07:54:58,150 | INFO     | sum of square deviations: 218571540.0
[2025-10-08 18:55:30] 2025-10-08 07:54:58,150 | INFO     | sum of deviations: -220145217.99999997
[2025-10-08 18:55:30] 2025-10-08 07:54:58,150 | INFO     | mean x: 1759907243.0
[2025-10-08 18:55:30] 2025-10-08 07:54:58,150 | INFO     | mean y: 2316011.6966292136
[2025-10-08 18:55:30] 2025-10-08 07:54:58,150 | INFO     | -- intersect: 1774894288.2188787
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | intersect: 1774894288.2188787
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | chi2: 0.0011430553142282747
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | -- intersect: 1774894288.2188787
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | current memory leak: -1.01 B/s (using 89 data points, chi2=0.00)
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | could have reported an average CPU frequency of 4105 MHz (7 samples)
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | ..............................
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | . Timing measurements:
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | . get job = 0 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | . initial setup = 5 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | . payload setup = 3 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | . stage-in = 0 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | . payload execution = 5836 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,151 | INFO     | . stage-out = 0 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,152 | INFO     | . log creation = 0 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,152 | INFO     | ..............................
[2025-10-08 18:55:30] 2025-10-08 07:54:58,215 | INFO     | 
[2025-10-08 18:55:30] 2025-10-08 07:54:58,215 | INFO     | job summary report
[2025-10-08 18:55:30] 2025-10-08 07:54:58,215 | INFO     | --------------------------------------------------
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | PanDA job id: 6833170282
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | task id: 46376905
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | errors: (none)
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | pilot state: finished 
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | transexitcode: 0
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | exeerrorcode: 0
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | exeerrordiag: 
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | exitcode: 0
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | exitmsg: OK
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | cpuconsumptiontime: 22193 s
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | nevents: 400
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | neventsw: 0
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | pid: 1413580
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | pgrp: 1413580
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | corecount: 4
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | event service: False
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | sizes: {0: 2348780, 1: 2348780, 3: 2349070, 11: 2349098, 5844: 2375899, 5846: 2385103, 5851: 2385241}
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | --------------------------------------------------
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | 
[2025-10-08 18:55:30] 2025-10-08 07:54:58,216 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/2
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | job 6833170282 has completed (purged errors)
[2025-10-08 18:55:30] 2025-10-08 07:54:58,236 | INFO     | overall cleanup function is called
[2025-10-08 18:55:30] 2025-10-08 07:54:59,243 | INFO     | --- collectZombieJob: --- 10, [1413580]
[2025-10-08 18:55:30] 2025-10-08 07:54:59,244 | INFO     | zombie collector waiting for pid 1413580
[2025-10-08 18:55:30] 2025-10-08 07:54:59,244 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 18:55:30] 2025-10-08 07:54:59,244 | INFO     | collected zombie processes
[2025-10-08 18:55:30] 2025-10-08 07:54:59,244 | INFO     | will attempt to kill all subprocesses of pid=1413580
[2025-10-08 18:55:30] 2025-10-08 07:54:59,382 | INFO     | process IDs to be killed: [1413580] (in reverse order)
[2025-10-08 18:55:30] 2025-10-08 07:54:59,439 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 18:55:30] 2025-10-08 07:54:59,439 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 18:55:30] 2025-10-08 07:54:59,443 | INFO     | did not find any defunct processes belonging to 1413580
[2025-10-08 18:55:30] 2025-10-08 07:54:59,447 | INFO     | did not find any defunct processes belonging to 1413580
[2025-10-08 18:55:30] 2025-10-08 07:54:59,447 | INFO     | ready for new job
[2025-10-08 18:55:30] 2025-10-08 07:54:59,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 18:55:30] 2025-10-08 07:54:59,448 | INFO     | ***************************************
[2025-10-08 18:55:30] 2025-10-08 07:54:59,448 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 18:55:30] 2025-10-08 07:54:59,448 | INFO     | ***************************************
[2025-10-08 18:55:30] 2025-10-08 07:54:59,448 | INFO     | 
[2025-10-08 18:55:30] 2025-10-08 07:54:59,449 | INFO     | architecture information:
[2025-10-08 18:55:30] 2025-10-08 07:54:59,449 | INFO     | executing command: cat /etc/os-release
[2025-10-08 18:55:30] 2025-10-08 07:54:59,464 | INFO     | cat /etc/os-release:
[2025-10-08 18:55:30] NAME="CentOS Linux"
[2025-10-08 18:55:30] VERSION="7 (Core)"
[2025-10-08 18:55:30] ID="centos"
[2025-10-08 18:55:30] ID_LIKE="rhel fedora"
[2025-10-08 18:55:30] VERSION_ID="7"
[2025-10-08 18:55:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 18:55:30] ANSI_COLOR="0;31"
[2025-10-08 18:55:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 18:55:30] HOME_URL="https://www.centos.org/"
[2025-10-08 18:55:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 18:55:30] 
[2025-10-08 18:55:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 18:55:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 18:55:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 18:55:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 18:55:30] 
[2025-10-08 18:55:30] 2025-10-08 07:54:59,464 | INFO     | ***************************************
[2025-10-08 18:55:30] 2025-10-08 07:54:59,966 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/2
[2025-10-08 18:55:30] 2025-10-08 07:54:59,978 | INFO     | sufficient remaining disk space (208910942208 B)
[2025-10-08 18:55:30] 2025-10-08 07:54:59,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 18:55:30] 2025-10-08 07:54:59,978 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 18:55:30] 2025-10-08 07:54:59,978 | INFO     | update_server=False
[2025-10-08 18:55:30] 2025-10-08 07:54:59,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 18:55:30] 2025-10-08 07:54:59,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 18:55:30] 2025-10-08 07:54:59,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 18:55:30] 2025-10-08 07:55:00,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 18:55:30] 2025-10-08 07:55:00,147 | INFO     | aborting loop
[2025-10-08 18:55:30] 2025-10-08 07:55:00,499 | INFO     | all data control threads have been joined
[2025-10-08 18:55:30] 2025-10-08 07:55:00,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 18:55:30] 2025-10-08 07:55:00,853 | INFO     | all payload control threads have been joined
[2025-10-08 18:55:30] 2025-10-08 07:55:00,983 | INFO     | [job] retrieve thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:00,983 | INFO     | [job] queue monitor thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:01,152 | INFO     | [job] job monitor thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:01,277 | INFO     | all job control threads have been joined
[2025-10-08 18:55:30] 2025-10-08 07:55:01,423 | INFO     | [payload] validate_post thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:01,504 | INFO     | [data] control thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:01,858 | INFO     | [payload] control thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,087 | INFO     | [job] validate thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,148 | INFO     | [data] copytool_in thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,161 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,282 | INFO     | [job] control thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,283 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,338 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,499 | INFO     | [payload] failed_post thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:02,695 | INFO     | [data] copytool_out thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:03,979 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 18:55:30] 2025-10-08 07:55:22,096 | INFO     | [monitor] cgroup control has ended
[2025-10-08 18:55:30] 2025-10-08 07:55:23,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130615126763328)>', '<ExcThread(monitor, started 130614049109760)>']
[2025-10-08 18:55:30] 2025-10-08 07:55:28,125 | INFO     | all workflow threads have been joined
[2025-10-08 18:55:30] 2025-10-08 07:55:28,125 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 18:55:30] 2025-10-08 07:55:28,125 | INFO     | traces error code: 0
[2025-10-08 18:55:30] 2025-10-08 07:55:28,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 18:55:30] 2025-10-08 07:55:30,264 | INFO     | PID=1406986 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 18:55:30] 2025-10-08 07:55:30,264 | INFO     | .. there are 4 such processes running
[2025-10-08 18:55:30] 2025-10-08 07:55:30,265 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 18:55:30] 2025-10-08 07:55:30,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 18:55:30] 2025-10-08 07:55:30,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 18:55:30] 2025-10-08 07:55:30,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 18:55:30] 2025-10-08 07:55:30,265 | INFO     | [monitor] control thread has ended
[2025-10-08 18:55:30] 2025-10-08 07:55:30,359 [wrapper] ==== pilot stdout END ====
[2025-10-08 18:55:30] 2025-10-08 07:55:30,361 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 18:55:30] 2025-10-08 07:55:30,362 [wrapper] pilotpid: 1406986
[2025-10-08 18:55:30] 2025-10-08 07:55:30,363 [wrapper] Pilot exit status: 0
[2025-10-08 18:55:30] 2025-10-08 07:55:30,370 [wrapper] pandaids: 6833170282
[2025-10-08 18:55:30] 2025-10-08 07:55:30,402 [wrapper] cleanup supervisor_pilot 1514938 1406987
[2025-10-08 18:55:30] 2025-10-08 07:55:30,407 [wrapper] Test setup, not cleaning
[2025-10-08 18:55:30] 2025-10-08 07:55:30,410 [wrapper] apfmon messages muted
[2025-10-08 18:55:30] 2025-10-08 07:55:30,413 [wrapper] ==== wrapper stdout END ====
[2025-10-08 18:55:30] 2025-10-08 07:55:30,415 [wrapper] ==== wrapper stderr END ====
[2025-10-08 18:55:30]  *** Error codes and diagnostics ***
[2025-10-08 18:55:30]     "exeErrorCode": 0,
[2025-10-08 18:55:30]     "exeErrorDiag": "",
[2025-10-08 18:55:30]     "pilotErrorCode": 0,
[2025-10-08 18:55:30]     "pilotErrorDiag": "",
[2025-10-08 18:55:30]  *** Listing of results directory ***
[2025-10-08 18:55:30] total 392432
[2025-10-08 18:55:30] -rw-r--r-- 1 michael michael    552446 Oct  7 16:44 pilot3.tar.gz
[2025-10-08 18:55:30] -rw-r--r-- 1 michael michael      5112 Oct  7 17:03 queuedata.json
[2025-10-08 18:55:30] -rwx------ 1 michael michael     36292 Oct  7 17:04 runpilot2-wrapper.sh
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael       100 Oct  8 17:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 18:55:30] -rwxr-xr-x 1 michael michael      7986 Oct  8 17:17 run_atlas
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael       105 Oct  8 17:17 job.xml
[2025-10-08 18:55:30] -rw-r--r-- 2 michael michael 213532040 Oct  8 17:17 EVNT.46376901._004810.pool.root.1
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael      9813 Oct  8 17:17 init_data.xml
[2025-10-08 18:55:30] drwxrwx--x 2 michael michael      4096 Oct  8 17:17 shared
[2025-10-08 18:55:30] -rw-r--r-- 2 michael michael    565600 Oct  8 17:17 input.tar.gz
[2025-10-08 18:55:30] -rw-r--r-- 2 michael michael     15120 Oct  8 17:17 start_atlas.sh
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael         0 Oct  8 17:17 boinc_lockfile
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael      2520 Oct  8 17:17 pandaJob.out
[2025-10-08 18:55:30] -rw------- 1 michael michael    979841 Oct  8 17:17 agis_schedconf.cvmfs.json
[2025-10-08 18:55:30] -rw------- 1 michael michael   1560401 Oct  8 17:17 agis_ddmendpoints.agis.ALL.json
[2025-10-08 18:55:30] drwx------ 4 michael michael      4096 Oct  8 17:17 pilot3
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael       529 Oct  8 18:54 boinc_task_state.xml
[2025-10-08 18:55:30] -rw------- 1 michael michael 182105025 Oct  8 18:54 HITS.46376905._129202.pool.root.1
[2025-10-08 18:55:30] -rw------- 1 michael michael      1019 Oct  8 18:54 memory_monitor_summary.json
[2025-10-08 18:55:30] -rw------- 1 michael michael    288861 Oct  8 18:54 log.46376905._129202.job.log.tgz.1
[2025-10-08 18:55:30] -rw------- 1 michael michael      7719 Oct  8 18:54 heartbeat.json
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael      8192 Oct  8 18:55 boinc_mmap_file
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael        27 Oct  8 18:55 wrapper_checkpoint.txt
[2025-10-08 18:55:30] -rw------- 1 michael michael        95 Oct  8 18:55 pilot_heartbeat.json
[2025-10-08 18:55:30] -rw------- 1 michael michael       822 Oct  8 18:55 pilotlog.txt
[2025-10-08 18:55:30] -rw------- 1 michael michael    869913 Oct  8 18:55 log.46376905._129202.job.log.1
[2025-10-08 18:55:30] -rw------- 1 michael michael       357 Oct  8 18:55 output.list
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael       620 Oct  8 18:55 runtime_log
[2025-10-08 18:55:30] -rw------- 1 michael michael   1177600 Oct  8 18:55 result.tar.gz
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael      8797 Oct  8 18:55 runtime_log.err
[2025-10-08 18:55:30] -rw------- 1 michael michael       641 Oct  8 18:55 pyKMDmpzFQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDm07KMDm1AraJn.diag
[2025-10-08 18:55:30] -rw-rw-r-- 1 michael michael     21678 Oct  8 18:55 stderr.txt
[2025-10-08 18:55:30] HITS file was successfully produced:
[2025-10-08 18:55:30] -rw------- 1 michael michael 182105025 Oct  8 18:54 shared/HITS.pool.root.1
[2025-10-08 18:55:30]  *** Contents of shared directory: ***
[2025-10-08 18:55:30] total 388100
[2025-10-08 18:55:30] -rw-r--r-- 2 michael michael 213532040 Oct  8 17:17 ATLAS.root_0
[2025-10-08 18:55:30] -rw-r--r-- 2 michael michael    565600 Oct  8 17:17 input.tar.gz
[2025-10-08 18:55:30] -rw-r--r-- 2 michael michael     15120 Oct  8 17:17 start_atlas.sh
[2025-10-08 18:55:30] -rw------- 1 michael michael 182105025 Oct  8 18:54 HITS.pool.root.1
[2025-10-08 18:55:30] -rw------- 1 michael michael   1177600 Oct  8 18:55 result.tar.gz
18:55:32 (1403178): run_atlas exited; CPU time 22255.349612
18:55:32 (1403178): called boinc_finish(0)

</stderr_txt>
]]>

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