Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:59:39 (643193): wrapper (7.7.26015): starting
23:59:39 (643193): wrapper: running run_atlas (--nthreads 2)
[2025-10-07 23:59:39] Arguments: --nthreads 2
[2025-10-07 23:59:39] Threads: 2
[2025-10-07 23:59:39] Checking for CVMFS
[2025-10-07 23:59:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 23:59:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 23:59:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 23:59:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 23:59:41] 2.9.2.0 643388 0 29648 151448 4 1 1999452 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-07 23:59:41] CVMFS is ok
[2025-10-07 23:59:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 23:59:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 23:59:41] Further information can be found at the LHC@home message board.
[2025-10-07 23:59:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 23:59:41] Checking for apptainer binary...
[2025-10-07 23:59:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 23:59:41] Running /usr/bin/apptainer --version
[2025-10-07 23:59:41] apptainer version 1.4.1-1.1
[2025-10-07 23:59:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 23:59:41] atlasA228a
[2025-10-07 23:59:41] apptainer works
[2025-10-07 23:59:41] Set ATHENA_PROC_NUMBER=2
[2025-10-07 23:59:41] Set ATHENA_CORE_NUMBER=2
[2025-10-07 23:59:41] Starting ATLAS job with PandaID=6833170788
[2025-10-07 23:59:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 01:49:16]  *** The last 200 lines of the pilot log: ***
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | job 6833170788 has completed (purged errors)
[2025-10-08 01:49:16] 2025-10-07 23:48:45,577 | INFO     | overall cleanup function is called
[2025-10-08 01:49:16] 2025-10-07 23:48:46,582 | INFO     | --- collectZombieJob: --- 10, [654469]
[2025-10-08 01:49:16] 2025-10-07 23:48:46,582 | INFO     | zombie collector waiting for pid 654469
[2025-10-08 01:49:16] 2025-10-07 23:48:46,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 01:49:16] 2025-10-07 23:48:46,582 | INFO     | collected zombie processes
[2025-10-08 01:49:16] 2025-10-07 23:48:46,583 | INFO     | will attempt to kill all subprocesses of pid=654469
[2025-10-08 01:49:16] 2025-10-07 23:48:46,622 | INFO     | process IDs to be killed: [654469] (in reverse order)
[2025-10-08 01:49:16] 2025-10-07 23:48:46,643 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 01:49:16] 2025-10-07 23:48:46,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 01:49:16] 2025-10-07 23:48:46,643 | INFO     | did not find any defunct processes belonging to 654469
[2025-10-08 01:49:16] 2025-10-07 23:48:46,644 | INFO     | did not find any defunct processes belonging to 654469
[2025-10-08 01:49:16] 2025-10-07 23:48:46,644 | INFO     | ready for new job
[2025-10-08 01:49:16] 2025-10-07 23:48:46,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 01:49:16] 2025-10-07 23:48:46,645 | INFO     | ***************************************
[2025-10-08 01:49:16] 2025-10-07 23:48:46,645 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 01:49:16] 2025-10-07 23:48:46,645 | INFO     | ***************************************
[2025-10-08 01:49:16] 2025-10-07 23:48:46,645 | INFO     | 
[2025-10-08 01:49:16] 2025-10-07 23:48:46,645 | INFO     | architecture information:
[2025-10-08 01:49:16] 2025-10-07 23:48:46,645 | INFO     | executing command: cat /etc/os-release
[2025-10-08 01:49:16] 2025-10-07 23:48:46,653 | INFO     | cat /etc/os-release:
[2025-10-08 01:49:16] NAME="CentOS Linux"
[2025-10-08 01:49:16] VERSION="7 (Core)"
[2025-10-08 01:49:16] ID="centos"
[2025-10-08 01:49:16] ID_LIKE="rhel fedora"
[2025-10-08 01:49:16] VERSION_ID="7"
[2025-10-08 01:49:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 01:49:16] ANSI_COLOR="0;31"
[2025-10-08 01:49:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 01:49:16] HOME_URL="https://www.centos.org/"
[2025-10-08 01:49:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 01:49:16] 
[2025-10-08 01:49:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 01:49:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 01:49:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 01:49:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 01:49:16] 
[2025-10-08 01:49:16] 2025-10-07 23:48:46,653 | INFO     | ***************************************
[2025-10-08 01:49:16] 2025-10-07 23:48:47,157 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 01:49:16] 2025-10-07 23:48:47,169 | INFO     | sufficient remaining disk space (209612439552 B)
[2025-10-08 01:49:16] 2025-10-07 23:48:47,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 01:49:16] 2025-10-07 23:48:47,170 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 01:49:16] 2025-10-07 23:48:47,170 | INFO     | update_server=False
[2025-10-08 01:49:16] 2025-10-07 23:48:47,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 01:49:16] 2025-10-07 23:48:47,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 01:49:16] 2025-10-07 23:48:47,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 01:49:16] 2025-10-07 23:48:47,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 01:49:16] 2025-10-07 23:48:47,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 01:49:16] 2025-10-07 23:48:47,454 | INFO     | aborting loop
[2025-10-08 01:49:16] 2025-10-07 23:48:47,840 | INFO     | all data control threads have been joined
[2025-10-08 01:49:16] 2025-10-07 23:48:47,948 | INFO     | all payload control threads have been joined
[2025-10-08 01:49:16] 2025-10-07 23:48:48,014 | INFO     | all job control threads have been joined
[2025-10-08 01:49:16] 2025-10-07 23:48:48,176 | INFO     | [job] queue monitor thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:48,176 | INFO     | [job] retrieve thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:48,452 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:48,460 | INFO     | [job] job monitor thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:48,846 | INFO     | [data] control thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:48,954 | INFO     | [payload] control thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,021 | INFO     | [job] control thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,175 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,255 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,272 | INFO     | [data] copytool_out thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,279 | INFO     | [job] validate thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,359 | INFO     | [data] copytool_in thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,384 | INFO     | [payload] validate_post thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:49,515 | INFO     | [payload] failed_post thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:51,177 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:48:57,366 | INFO     | job.realtimelogging is not enabled
[2025-10-08 01:49:16] 2025-10-07 23:48:58,373 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 01:49:16] 2025-10-07 23:49:06,405 | INFO     | [monitor] cgroup control has ended
[2025-10-08 01:49:16] 2025-10-07 23:49:08,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393042687808)>', '<ExcThread(monitor, started 140392414574336)>']
[2025-10-08 01:49:16] 2025-10-07 23:49:13,178 | INFO     | all workflow threads have been joined
[2025-10-08 01:49:16] 2025-10-07 23:49:13,179 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 01:49:16] 2025-10-07 23:49:13,179 | INFO     | traces error code: 0
[2025-10-08 01:49:16] 2025-10-07 23:49:13,179 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 01:49:16] 2025-10-07 23:49:16,747 | INFO     | PID=647442 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 01:49:16] 2025-10-07 23:49:16,747 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 01:49:16] 2025-10-07 23:49:16,747 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 01:49:16] 2025-10-07 23:49:16,747 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 01:49:16] 2025-10-07 23:49:16,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 01:49:16] 2025-10-07 23:49:16,747 | INFO     | [monitor] control thread has ended
[2025-10-08 01:49:16] 2025-10-07 23:49:16,786 [wrapper] ==== pilot stdout END ====
[2025-10-08 01:49:16] 2025-10-07 23:49:16,789 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 01:49:16] 2025-10-07 23:49:16,791 [wrapper] pilotpid: 647442
[2025-10-08 01:49:16] 2025-10-07 23:49:16,794 [wrapper] Pilot exit status: 0
[2025-10-08 01:49:16] 2025-10-07 23:49:16,799 [wrapper] pandaids: 6833170788
[2025-10-08 01:49:16] 2025-10-07 23:49:16,812 [wrapper] cleanup supervisor_pilot  669090 647443
[2025-10-08 01:49:16] 2025-10-07 23:49:16,814 [wrapper] Test setup, not cleaning
[2025-10-08 01:49:16] 2025-10-07 23:49:16,816 [wrapper] apfmon messages muted
[2025-10-08 01:49:16] 2025-10-07 23:49:16,819 [wrapper] ==== wrapper stdout END ====
[2025-10-08 01:49:16] 2025-10-07 23:49:16,821 [wrapper] ==== wrapper stderr END ====
[2025-10-08 01:49:16]  *** Error codes and diagnostics ***
[2025-10-08 01:49:16]     "exeErrorCode": 0,
[2025-10-08 01:49:16]     "exeErrorDiag": "",
[2025-10-08 01:49:16]     "pilotErrorCode": 0,
[2025-10-08 01:49:16]     "pilotErrorDiag": "",
[2025-10-08 01:49:16]  *** Listing of results directory ***
[2025-10-08 01:49:16] total 388916
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc    552446 Oct  7 07:44 pilot3.tar.gz
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc      5112 Oct  7 08:22 queuedata.json
[2025-10-08 01:49:16] -rwx------ 1 boinc boinc     36292 Oct  7 08:23 runpilot2-wrapper.sh
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc       100 Oct  7 23:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 01:49:16] -rwxr-xr-x 1 boinc boinc      7986 Oct  7 23:59 run_atlas
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc       105 Oct  7 23:59 job.xml
[2025-10-08 01:49:16] -rw-r--r-- 2 boinc boinc 215463406 Oct  7 23:59 EVNT.46376901._004821.pool.root.1
[2025-10-08 01:49:16] -rw-r--r-- 2 boinc boinc    565604 Oct  7 23:59 input.tar.gz
[2025-10-08 01:49:16] -rw-r--r-- 2 boinc boinc     15120 Oct  7 23:59 start_atlas.sh
[2025-10-08 01:49:16] drwxrwx--x 2 boinc boinc      4096 Oct  7 23:59 shared
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc         0 Oct  7 23:59 boinc_setup_complete
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc      6206 Oct  7 23:59 init_data.xml
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc         0 Oct  7 23:59 boinc_lockfile
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc      2521 Oct  7 23:59 pandaJob.out
[2025-10-08 01:49:16] -rw------- 1 boinc boinc    979849 Oct  7 23:59 agis_schedconf.cvmfs.json
[2025-10-08 01:49:16] -rw------- 1 boinc boinc   1560401 Oct  7 23:59 agis_ddmendpoints.agis.ALL.json
[2025-10-08 01:49:16] drwx------ 4 boinc boinc      4096 Oct  7 23:59 pilot3
[2025-10-08 01:49:16] -rw------- 1 boinc boinc 176516561 Oct  8 01:48 HITS.46376905._129468.pool.root.1
[2025-10-08 01:49:16] -rw------- 1 boinc boinc        95 Oct  8 01:48 pilot_heartbeat.json
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc       529 Oct  8 01:48 boinc_task_state.xml
[2025-10-08 01:49:16] -rw------- 1 boinc boinc      1011 Oct  8 01:48 memory_monitor_summary.json
[2025-10-08 01:49:16] -rw------- 1 boinc boinc    253270 Oct  8 01:48 log.46376905._129468.job.log.tgz.1
[2025-10-08 01:49:16] -rw------- 1 boinc boinc      7755 Oct  8 01:48 heartbeat.json
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc      8192 Oct  8 01:49 boinc_mmap_file
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc        27 Oct  8 01:49 wrapper_checkpoint.txt
[2025-10-08 01:49:16] -rw------- 1 boinc boinc       746 Oct  8 01:49 pilotlog.txt
[2025-10-08 01:49:16] -rw------- 1 boinc boinc    941301 Oct  8 01:49 log.46376905._129468.job.log.1
[2025-10-08 01:49:16] -rw------- 1 boinc boinc       357 Oct  8 01:49 output.list
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc       620 Oct  8 01:49 runtime_log
[2025-10-08 01:49:16] -rw------- 1 boinc boinc   1218560 Oct  8 01:49 result.tar.gz
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc      8797 Oct  8 01:49 runtime_log.err
[2025-10-08 01:49:16] -rw------- 1 boinc boinc       662 Oct  8 01:49 ef7LDmpHGQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmFALMDmqG0KUn.diag
[2025-10-08 01:49:16] -rw-r--r-- 1 boinc boinc     11590 Oct  8 01:49 stderr.txt
[2025-10-08 01:49:16] HITS file was successfully produced:
[2025-10-08 01:49:16] -rw------- 1 boinc boinc 176516561 Oct  8 01:48 shared/HITS.pool.root.1
[2025-10-08 01:49:16]  *** Contents of shared directory: ***
[2025-10-08 01:49:16] total 384568
[2025-10-08 01:49:16] -rw-r--r-- 2 boinc boinc 215463406 Oct  7 23:59 ATLAS.root_0
[2025-10-08 01:49:16] -rw-r--r-- 2 boinc boinc    565604 Oct  7 23:59 input.tar.gz
[2025-10-08 01:49:16] -rw-r--r-- 2 boinc boinc     15120 Oct  7 23:59 start_atlas.sh
[2025-10-08 01:49:16] -rw------- 1 boinc boinc 176516561 Oct  8 01:48 HITS.pool.root.1
[2025-10-08 01:49:16] -rw------- 1 boinc boinc   1218560 Oct  8 01:49 result.tar.gz
01:49:18 (643193): run_atlas exited; CPU time 12582.500957
01:49:18 (643193): called boinc_finish(0)

</stderr_txt>
]]>

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