Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:17:25 (25383): wrapper (7.7.26015): starting
08:17:25 (25383): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 08:17:25] Arguments: --nthreads 8
[2025-10-08 08:17:25] Threads: 8
[2025-10-08 08:17:25] Checking for CVMFS
[2025-10-08 08:17:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 08:17:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 08:17:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 08:17:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 08:17:28] 2.11.2.0 13959 214458 141648 151461 3 60 13018682 25165825 4632 130560 0 129741022 99.892 64740200 4247 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 08:17:28] CVMFS is ok
[2025-10-08 08:17:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 08:17:28] Checking for apptainer binary...
[2025-10-08 08:17:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 08:17:28] Running /usr/bin/apptainer --version
[2025-10-08 08:17:28] apptainer version 1.3.2-1.el7
[2025-10-08 08:17:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 08:17:46] cg-vwn499.simple-grid.lan
[2025-10-08 08:17:46] apptainer works
[2025-10-08 08:17:46] Set ATHENA_PROC_NUMBER=8
[2025-10-08 08:17:46] Set ATHENA_CORE_NUMBER=8
[2025-10-08 08:17:46] Starting ATLAS job with PandaID=6831734358
[2025-10-08 08:17:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 11:48:40]  *** The last 200 lines of the pilot log: ***
[2025-10-08 11:48:40] 2025-10-08 09:47:58,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 11:48:40] 2025-10-08 09:47:58,998 | INFO     | fitting pss+swap vs Time
[2025-10-08 11:48:40] 2025-10-08 09:47:58,998 | INFO     | sum of square deviations: 2263977332.5
[2025-10-08 11:48:40] 2025-10-08 09:47:58,999 | INFO     | sum of deviations: 53450896840.5
[2025-10-08 11:48:40] 2025-10-08 09:47:59,000 | INFO     | mean x: 1759910854.5
[2025-10-08 11:48:40] 2025-10-08 09:47:59,000 | INFO     | mean y: 2424924.2731958763
[2025-10-08 11:48:40] 2025-10-08 09:47:59,000 | INFO     | -- intersect: -41547820381.61955
[2025-10-08 11:48:40] 2025-10-08 09:47:59,000 | INFO     | intersect: -41547820381.61955
[2025-10-08 11:48:40] 2025-10-08 09:47:59,000 | INFO     | chi2: 7.4287269303449435
[2025-10-08 11:48:40] 2025-10-08 09:47:59,001 | INFO     | sum of square deviations: 2093397390.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,002 | INFO     | sum of deviations: 64811771599.00003
[2025-10-08 11:48:40] 2025-10-08 09:47:59,002 | INFO     | mean x: 1759910702.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,002 | INFO     | mean y: 2434842.6084656087
[2025-10-08 11:48:40] 2025-10-08 09:47:59,002 | INFO     | -- intersect: -54484558882.29524
[2025-10-08 11:48:40] 2025-10-08 09:47:59,002 | INFO     | intersect: -54484558882.29524
[2025-10-08 11:48:40] 2025-10-08 09:47:59,003 | INFO     | chi2: 6.742048177827038
[2025-10-08 11:48:40] 2025-10-08 09:47:59,003 | INFO     | current chi2=6.742048177827038 (change=9.243558942959025 %)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,003 | INFO     | right removable region: 188
[2025-10-08 11:48:40] 2025-10-08 09:47:59,003 | INFO     | sum of square deviations: 2093397390.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,004 | INFO     | sum of deviations: -13070898159.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,004 | INFO     | mean x: 1759911007.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,005 | INFO     | mean y: 2484336.5767195765
[2025-10-08 11:48:40] 2025-10-08 09:47:59,005 | INFO     | -- intersect: 10991137351.664377
[2025-10-08 11:48:40] 2025-10-08 09:47:59,005 | INFO     | intersect: 10991137351.664377
[2025-10-08 11:48:40] 2025-10-08 09:47:59,005 | INFO     | chi2: 2.4562240386072873
[2025-10-08 11:48:40] 2025-10-08 09:47:59,005 | INFO     | current chi2=2.4562240386072873 (change=66.93613775768125 %)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,006 | INFO     | sum of square deviations: 1931608310.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,007 | INFO     | sum of deviations: -46087100701.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,007 | INFO     | mean x: 1759911159.5
[2025-10-08 11:48:40] 2025-10-08 09:47:59,007 | INFO     | mean y: 2515217.152173913
[2025-10-08 11:48:40] 2025-10-08 09:47:59,007 | INFO     | -- intersect: 41993017335.40521
[2025-10-08 11:48:40] 2025-10-08 09:47:59,007 | INFO     | intersect: 41993017335.40521
[2025-10-08 11:48:40] 2025-10-08 09:47:59,007 | INFO     | chi2: 0.9750294257060897
[2025-10-08 11:48:40] 2025-10-08 09:47:59,007 | INFO     | current chi2=0.9750294257060897 (change=60.303725947615725 %)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,008 | INFO     | sum of square deviations: 1778377530.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,009 | INFO     | sum of deviations: -42536963653.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,009 | INFO     | mean x: 1759911312.0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,009 | INFO     | mean y: 2511644.150837989
[2025-10-08 11:48:40] 2025-10-08 09:47:59,009 | INFO     | -- intersect: 42097782332.286194
[2025-10-08 11:48:40] 2025-10-08 09:47:59,009 | INFO     | intersect: 42097782332.286194
[2025-10-08 11:48:40] 2025-10-08 09:47:59,010 | INFO     | chi2: 0.9652073049531984
[2025-10-08 11:48:40] 2025-10-08 09:47:59,010 | INFO     | current chi2=0.9652073049531984 (change=1.007366597759697 %)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,010 | INFO     | left removable region: 30
[2025-10-08 11:48:40] 2025-10-08 09:47:59,010 | INFO     | sum of square deviations: 1223016419.5
[2025-10-08 11:48:40] 2025-10-08 09:47:59,011 | INFO     | sum of deviations: -11365876910.999998
[2025-10-08 11:48:40] 2025-10-08 09:47:59,011 | INFO     | mean x: 1759911586.5
[2025-10-08 11:48:40] 2025-10-08 09:47:59,011 | INFO     | mean y: 2503300.5316455695
[2025-10-08 11:48:40] 2025-10-08 09:47:59,011 | INFO     | -- intersect: 16357916153.1076
[2025-10-08 11:48:40] 2025-10-08 09:47:59,011 | INFO     | intersect: 16357916153.1076
[2025-10-08 11:48:40] 2025-10-08 09:47:59,012 | INFO     | chi2: 0.10517158848506342
[2025-10-08 11:48:40] 2025-10-08 09:47:59,012 | INFO     | -- intersect: 16357916153.1076
[2025-10-08 11:48:40] 2025-10-08 09:47:59,012 | INFO     | current memory leak: -9.29 B/s (using 158 data points, chi2=0.11)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,013 | INFO     | could have reported an average CPU frequency of 2249 MHz (10 samples)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,013 | INFO     | ..............................
[2025-10-08 11:48:40] 2025-10-08 09:47:59,013 | INFO     | . Timing measurements:
[2025-10-08 11:48:40] 2025-10-08 09:47:59,013 | INFO     | . get job = 0 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,013 | INFO     | . initial setup = 7 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,013 | INFO     | . payload setup = 140 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,013 | INFO     | . stage-in = 0 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,014 | INFO     | . payload execution = 11975 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,014 | INFO     | . stage-out = 3 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,014 | INFO     | . log creation = 1 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,014 | INFO     | ..............................
[2025-10-08 11:48:40] 2025-10-08 09:47:59,121 | INFO     | 
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | job summary report
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | --------------------------------------------------
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | PanDA job id: 6831734358
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | task id: 46376905
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | errors: (none)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | pilot state: finished 
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | transexitcode: 0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | exeerrorcode: 0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | exeerrordiag: 
[2025-10-08 11:48:40] 2025-10-08 09:47:59,122 | INFO     | exitcode: 0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | exitmsg: OK
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | cpuconsumptiontime: 44434 s
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | nevents: 400
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | neventsw: 0
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | pid: 3354
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | pgrp: 3354
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | corecount: 8
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | event service: False
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | sizes: {0: 2348645, 1: 2348844, 12: 2348844, 23: 2348872, 33: 2348900, 44: 2348956, 55: 2349112, 66: 2349140, 76: 2349168, 87: 2349224, 89: 2349514, 98: 2349822, 1
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | --------------------------------------------------
[2025-10-08 11:48:40] 2025-10-08 09:47:59,123 | INFO     | 
[2025-10-08 11:48:40] 2025-10-08 09:47:59,124 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,154 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 11:48:40] 2025-10-08 09:47:59,156 | INFO     | job 6831734358 has completed (purged errors)
[2025-10-08 11:48:40] 2025-10-08 09:47:59,156 | INFO     | overall cleanup function is called
[2025-10-08 11:48:40] 2025-10-08 09:48:00,164 | INFO     | --- collectZombieJob: --- 10, [3354]
[2025-10-08 11:48:40] 2025-10-08 09:48:00,164 | INFO     | zombie collector waiting for pid 3354
[2025-10-08 11:48:40] 2025-10-08 09:48:00,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 11:48:40] 2025-10-08 09:48:00,165 | INFO     | collected zombie processes
[2025-10-08 11:48:40] 2025-10-08 09:48:00,165 | INFO     | will attempt to kill all subprocesses of pid=3354
[2025-10-08 11:48:40] 2025-10-08 09:48:00,262 | INFO     | process IDs to be killed: [3354] (in reverse order)
[2025-10-08 11:48:40] 2025-10-08 09:48:00,874 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 11:48:40] 2025-10-08 09:48:00,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 11:48:40] 2025-10-08 09:48:00,877 | INFO     | did not find any defunct processes belonging to 3354
[2025-10-08 11:48:40] 2025-10-08 09:48:00,880 | INFO     | did not find any defunct processes belonging to 3354
[2025-10-08 11:48:40] 2025-10-08 09:48:00,881 | INFO     | ready for new job
[2025-10-08 11:48:40] 2025-10-08 09:48:00,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 11:48:40] 2025-10-08 09:48:00,883 | INFO     | ***************************************
[2025-10-08 11:48:40] 2025-10-08 09:48:00,883 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 11:48:40] 2025-10-08 09:48:00,883 | INFO     | ***************************************
[2025-10-08 11:48:40] 2025-10-08 09:48:00,883 | INFO     | 
[2025-10-08 11:48:40] 2025-10-08 09:48:00,884 | INFO     | pilot is running in a VM
[2025-10-08 11:48:40] 2025-10-08 09:48:00,884 | INFO     | architecture information:
[2025-10-08 11:48:40] 2025-10-08 09:48:00,885 | INFO     | executing command: cat /etc/os-release
[2025-10-08 11:48:40] 2025-10-08 09:48:00,995 | INFO     | cat /etc/os-release:
[2025-10-08 11:48:40] NAME="CentOS Linux"
[2025-10-08 11:48:40] VERSION="7 (Core)"
[2025-10-08 11:48:40] ID="centos"
[2025-10-08 11:48:40] ID_LIKE="rhel fedora"
[2025-10-08 11:48:40] VERSION_ID="7"
[2025-10-08 11:48:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 11:48:40] ANSI_COLOR="0;31"
[2025-10-08 11:48:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 11:48:40] HOME_URL="https://www.centos.org/"
[2025-10-08 11:48:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 11:48:40] 
[2025-10-08 11:48:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 11:48:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 11:48:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 11:48:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 11:48:40] 
[2025-10-08 11:48:40] 2025-10-08 09:48:00,996 | INFO     | ***************************************
[2025-10-08 11:48:40] 2025-10-08 09:48:01,499 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-08 11:48:40] 2025-10-08 09:48:01,661 | INFO     | sufficient remaining disk space (495382953984 B)
[2025-10-08 11:48:40] 2025-10-08 09:48:01,661 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 11:48:40] 2025-10-08 09:48:01,661 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 11:48:40] 2025-10-08 09:48:01,661 | INFO     | update_server=False
[2025-10-08 11:48:40] 2025-10-08 09:48:01,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 11:48:40] 2025-10-08 09:48:01,943 | INFO     | all data control threads have been joined
[2025-10-08 11:48:40] 2025-10-08 09:48:01,948 | INFO     | all payload control threads have been joined
[2025-10-08 11:48:40] 2025-10-08 09:48:02,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 11:48:40] 2025-10-08 09:48:02,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:48:40] 2025-10-08 09:48:02,457 | INFO     | aborting loop
[2025-10-08 11:48:40] 2025-10-08 09:48:02,646 | INFO     | all job control threads have been joined
[2025-10-08 11:48:40] 2025-10-08 09:48:02,667 | INFO     | [job] retrieve thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:02,949 | INFO     | [data] control thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:02,957 | INFO     | [payload] control thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,117 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,287 | INFO     | [job] validate thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,387 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,463 | INFO     | [job] job monitor thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,499 | INFO     | [data] copytool_in thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,653 | INFO     | [job] control thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,742 | INFO     | [payload] failed_post thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:03,873 | INFO     | [payload] validate_post thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:04,109 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:04,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:48:40] 2025-10-08 09:48:04,451 | INFO     | [data] copytool_out thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:05,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 11:48:40] 2025-10-08 09:48:05,142 | INFO     | [job] queue monitor thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:09,065 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:11,873 | INFO     | job.realtimelogging is not enabled
[2025-10-08 11:48:40] 2025-10-08 09:48:12,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 11:48:40] 2025-10-08 09:48:29,967 | INFO     | [monitor] cgroup control has ended
[2025-10-08 11:48:40] 2025-10-08 09:48:30,783 | INFO     | PID=29160 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 11:48:40] 2025-10-08 09:48:30,783 | INFO     | .. there are 9 such processes running
[2025-10-08 11:48:40] 2025-10-08 09:48:30,783 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 11:48:40] 2025-10-08 09:48:30,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 11:48:40] 2025-10-08 09:48:30,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 11:48:40] 2025-10-08 09:48:30,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998692550464)>', '<ExcThread(monitor, started 139998242252544)>']
[2025-10-08 11:48:40] 2025-10-08 09:48:31,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 11:48:40] 2025-10-08 09:48:31,789 | INFO     | [monitor] control thread has ended
[2025-10-08 11:48:40] 2025-10-08 09:48:35,893 | INFO     | all workflow threads have been joined
[2025-10-08 11:48:40] 2025-10-08 09:48:35,893 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 11:48:40] 2025-10-08 09:48:35,894 | INFO     | traces error code: 0
[2025-10-08 11:48:40] 2025-10-08 09:48:35,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 11:48:40] 2025-10-08 09:48:36,094 [wrapper] ==== pilot stdout END ====
[2025-10-08 11:48:40] 2025-10-08 09:48:36,109 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 11:48:40] 2025-10-08 09:48:36,118 [wrapper] pilotpid: 29160
[2025-10-08 11:48:40] 2025-10-08 09:48:36,126 [wrapper] Pilot exit status: 0
[2025-10-08 11:48:40] 2025-10-08 09:48:36,354 [wrapper] pandaids: 6831734358
[2025-10-08 11:48:40] 2025-10-08 09:48:37,539 [wrapper] cleanup supervisor_pilot 25237 29161
[2025-10-08 11:48:40] 2025-10-08 09:48:37,585 [wrapper] Test setup, not cleaning
[2025-10-08 11:48:40] 2025-10-08 09:48:37,684 [wrapper] apfmon messages muted
[2025-10-08 11:48:40] 2025-10-08 09:48:37,792 [wrapper] ==== wrapper stdout END ====
[2025-10-08 11:48:40] 2025-10-08 09:48:37,872 [wrapper] ==== wrapper stderr END ====
[2025-10-08 11:48:40]  *** Error codes and diagnostics ***
[2025-10-08 11:48:40]     "exeErrorCode": 0,
[2025-10-08 11:48:40]     "exeErrorDiag": "",
[2025-10-08 11:48:40]     "pilotErrorCode": 0,
[2025-10-08 11:48:40]     "pilotErrorDiag": "",
[2025-10-08 11:48:40]  *** Listing of results directory ***
[2025-10-08 11:48:41] total 392164
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc    552446 Oct  5 16:29 pilot3.tar.gz
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc      5112 Oct  5 16:40 queuedata.json
[2025-10-08 11:48:41] -rwx------. 1 boinc boinc     36292 Oct  5 16:40 runpilot2-wrapper.sh
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc       100 Oct  8 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 11:48:41] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 08:17 run_atlas
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc       105 Oct  8 08:17 job.xml
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc      6391 Oct  8 08:17 init_data.xml
[2025-10-08 11:48:41] -rw-r--r--. 2 boinc boinc 213925619 Oct  8 08:17 EVNT.46376901._003205.pool.root.1
[2025-10-08 11:48:41] -rw-r--r--. 2 boinc boinc     15120 Oct  8 08:17 start_atlas.sh
[2025-10-08 11:48:41] drwxrwx--x. 2 boinc boinc        68 Oct  8 08:17 shared
[2025-10-08 11:48:41] -rw-r--r--. 2 boinc boinc    565603 Oct  8 08:17 input.tar.gz
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc         0 Oct  8 08:17 boinc_lockfile
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc      2519 Oct  8 08:17 pandaJob.out
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc    979841 Oct  8 08:21 agis_schedconf.cvmfs.json
[2025-10-08 11:48:41] drwx------. 4 boinc boinc      4096 Oct  8 08:21 pilot3
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc 179596974 Oct  8 11:45 HITS.46376905._087247.pool.root.1
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc       530 Oct  8 11:45 boinc_task_state.xml
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc      1016 Oct  8 11:46 memory_monitor_summary.json
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc   1560401 Oct  8 11:46 agis_ddmendpoints.agis.ALL.json
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc    435669 Oct  8 11:46 log.46376905._087247.job.log.tgz.1
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc        95 Oct  8 11:47 pilot_heartbeat.json
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc      7783 Oct  8 11:47 heartbeat.json
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc      4956 Oct  8 11:48 pilotlog.txt
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc   1654615 Oct  8 11:48 log.46376905._087247.job.log.1
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc      8192 Oct  8 11:48 boinc_mmap_file
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc        28 Oct  8 11:48 wrapper_checkpoint.txt
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc       357 Oct  8 11:48 output.list
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc       620 Oct  8 11:48 runtime_log
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc   2109440 Oct  8 11:48 result.tar.gz
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc      8703 Oct  8 11:48 runtime_log.err
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc       656 Oct  8 11:48 hugMDmc5eP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4iPNDmdf5ySn.diag
[2025-10-08 11:48:41] -rw-r--r--. 1 boinc boinc     20585 Oct  8 11:48 stderr.txt
[2025-10-08 11:48:41] HITS file was successfully produced:
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc 179596974 Oct  8 11:45 shared/HITS.pool.root.1
[2025-10-08 11:48:41]  *** Contents of shared directory: ***
[2025-10-08 11:48:41] total 386932
[2025-10-08 11:48:41] -rw-r--r--. 2 boinc boinc 213925619 Oct  8 08:17 ATLAS.root_0
[2025-10-08 11:48:41] -rw-r--r--. 2 boinc boinc     15120 Oct  8 08:17 start_atlas.sh
[2025-10-08 11:48:41] -rw-r--r--. 2 boinc boinc    565603 Oct  8 08:17 input.tar.gz
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc 179596974 Oct  8 11:45 HITS.pool.root.1
[2025-10-08 11:48:41] -rw-------. 1 boinc boinc   2109440 Oct  8 11:48 result.tar.gz
11:48:42 (25383): run_atlas exited; CPU time 44583.234904
11:48:42 (25383): called boinc_finish(0)

</stderr_txt>
]]>

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