Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:11:02 (3869430): wrapper (7.7.26015): starting
10:11:02 (3869430): wrapper: running run_atlas (--nthreads 3)
[2025-10-09 10:11:02] Arguments: --nthreads 3
[2025-10-09 10:11:02] Threads: 3
[2025-10-09 10:11:02] Checking for CVMFS
[2025-10-09 10:11:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-09 10:11:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-09 10:11:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-09 10:11:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-09 10:11:41] 2.11.5.0 3869648 0 30932 151490 3 1 12782361 15728640 0 130560 0 0 100.000 2 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-09 10:11:41] CVMFS is ok
[2025-10-09 10:11:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-09 10:11:41] Checking for apptainer binary...
[2025-10-09 10:11:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-09 10:11:41] Running /usr/bin/apptainer --version
[2025-10-09 10:11:41] apptainer version 1.3.4-1.el9
[2025-10-09 10:11:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-09 10:11:41] testio003
[2025-10-09 10:11:41] apptainer works
[2025-10-09 10:11:41] Set ATHENA_PROC_NUMBER=3
[2025-10-09 10:11:41] Set ATHENA_CORE_NUMBER=3
[2025-10-09 10:11:41] Starting ATLAS job with PandaID=6833167357
[2025-10-09 10:11:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-09 11:58:29]  *** The last 200 lines of the pilot log: ***
[2025-10-09 11:58:29] 2025-10-09 02:57:27,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,055 | INFO     | time since job start (6257s) is within the limit (172800.0s)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,782 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-09 11:58:29] 2025-10-09 02:57:29,782 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3506.18825
[2025-10-09 11:58:29] 2025-10-09 02:57:29,783 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6833167357/memory_monitor_summary.json (trf name=prmon)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,783 | INFO     | extracted standard info from prmon json
[2025-10-09 11:58:29] 2025-10-09 02:57:29,783 | INFO     | extracted standard memory fields from prmon json
[2025-10-09 11:58:29] 2025-10-09 02:57:29,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-09 11:58:29] 2025-10-09 02:57:29,784 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-09 11:58:29] 2025-10-09 02:57:29,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | fitting pss+swap vs Time
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | sum of square deviations: 319447850.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | sum of deviations: 11499039911.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | mean x: 1759975468.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | mean y: 2356895.099009901
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | -- intersect: -63350794953.98341
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | intersect: -63350794953.98341
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | chi2: 2.2888441541531996
[2025-10-09 11:58:29] 2025-10-09 02:57:29,785 | INFO     | sum of square deviations: 274312120.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | sum of deviations: 11623142062.5
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | mean x: 1759975315.5
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | mean y: 2357314.65625
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | -- intersect: -74571245625.49004
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | intersect: -74571245625.49004
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | chi2: 2.29297297007377
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | current chi2=2.29297297007377 (change=-0.18038868714929532 %)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | right removable region: 95
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | sum of square deviations: 274312120.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | sum of deviations: -9656380672.5
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | mean x: 1759975620.5
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | mean y: 2427714.9895833335
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | -- intersect: 61957380948.07092
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | intersect: 61957380948.07092
[2025-10-09 11:58:29] 2025-10-09 02:57:29,786 | INFO     | chi2: 0.04108306278098779
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | current chi2=0.04108306278098779 (change=98.20507382704756 %)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | sum of square deviations: 233641590.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | sum of deviations: -9529312639.999998
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | mean x: 1759975773.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | mean y: 2427170.3516483516
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | -- intersect: 71784849896.29984
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | intersect: 71784849896.29984
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | chi2: 0.03113386343862416
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | current chi2=0.03113386343862416 (change=24.217277556452956 %)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | left removable region: 20
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | sum of square deviations: 130793150.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | sum of deviations: -6709709701.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | mean x: 1759975895.0
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | mean y: 2424875.48
[2025-10-09 11:58:29] 2025-10-09 02:57:29,787 | INFO     | -- intersect: 90289472295.07083
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | intersect: 90289472295.07083
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | chi2: 0.025437707010785446
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | -- intersect: 90289472295.07083
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | current memory leak: -51.30 B/s (using 75 data points, chi2=0.03)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | could have reported an average CPU frequency of 3545 MHz (7 samples)
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | ..............................
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . Timing measurements:
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . get job = 0 s
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . initial setup = 6 s
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . payload setup = 6 s
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . stage-in = 0 s
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . payload execution = 6149 s
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . stage-out = 0 s
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | . log creation = 0 s
[2025-10-09 11:58:29] 2025-10-09 02:57:29,788 | INFO     | ..............................
[2025-10-09 11:58:29] 2025-10-09 02:57:30,106 | INFO     | PID=3873693 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | 
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | job summary report
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | --------------------------------------------------
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | PanDA job id: 6833167357
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | task id: 46376905
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | errors: (none)
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | pilot state: finished 
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | transexitcode: 0
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | exeerrorcode: 0
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | exeerrordiag: 
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | exitcode: 0
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | exitmsg: OK
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | cpuconsumptiontime: 17346 s
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | nevents: 400
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | neventsw: 0
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | pid: 3880220
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | pgrp: 3880220
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | corecount: 3
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | event service: False
[2025-10-09 11:58:29] 2025-10-09 02:57:30,266 | INFO     | sizes: {0: 2348820, 5: 2349082, 11: 2349138, 6160: 2376014, 6162: 2385012, 6164: 2385068, 6242: 2385390}
[2025-10-09 11:58:29] 2025-10-09 02:57:30,267 | INFO     | --------------------------------------------------
[2025-10-09 11:58:29] 2025-10-09 02:57:30,267 | INFO     | 
[2025-10-09 11:58:29] 2025-10-09 02:57:30,267 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-09 11:58:29] 2025-10-09 02:57:30,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,277 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-09 11:58:29] 2025-10-09 02:57:30,278 | INFO     | job 6833167357 has completed (purged errors)
[2025-10-09 11:58:29] 2025-10-09 02:57:30,278 | INFO     | overall cleanup function is called
[2025-10-09 11:58:29] 2025-10-09 02:57:31,283 | INFO     | --- collectZombieJob: --- 10, [3880220]
[2025-10-09 11:58:29] 2025-10-09 02:57:31,283 | INFO     | zombie collector waiting for pid 3880220
[2025-10-09 11:58:29] 2025-10-09 02:57:31,283 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-09 11:58:29] 2025-10-09 02:57:31,284 | INFO     | collected zombie processes
[2025-10-09 11:58:29] 2025-10-09 02:57:31,284 | INFO     | will attempt to kill all subprocesses of pid=3880220
[2025-10-09 11:58:29] 2025-10-09 02:57:31,324 | INFO     | process IDs to be killed: [3880220] (in reverse order)
[2025-10-09 11:58:29] 2025-10-09 02:57:31,349 | WARNING  | found no corresponding commands to process id(s)
[2025-10-09 11:58:29] 2025-10-09 02:57:31,349 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-09 11:58:29] 2025-10-09 02:57:31,351 | INFO     | did not find any defunct processes belonging to 3880220
[2025-10-09 11:58:29] 2025-10-09 02:57:31,352 | INFO     | did not find any defunct processes belonging to 3880220
[2025-10-09 11:58:29] 2025-10-09 02:57:31,352 | INFO     | ready for new job
[2025-10-09 11:58:29] 2025-10-09 02:57:31,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-09 11:58:29] 2025-10-09 02:57:31,353 | INFO     | ***************************************
[2025-10-09 11:58:29] 2025-10-09 02:57:31,353 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-09 11:58:29] 2025-10-09 02:57:31,353 | INFO     | ***************************************
[2025-10-09 11:58:29] 2025-10-09 02:57:31,353 | INFO     | 
[2025-10-09 11:58:29] 2025-10-09 02:57:31,365 | INFO     | architecture information:
[2025-10-09 11:58:29] 2025-10-09 02:57:31,366 | INFO     | executing command: cat /etc/os-release
[2025-10-09 11:58:29] 2025-10-09 02:57:31,373 | INFO     | cat /etc/os-release:
[2025-10-09 11:58:29] NAME="CentOS Linux"
[2025-10-09 11:58:29] VERSION="7 (Core)"
[2025-10-09 11:58:29] ID="centos"
[2025-10-09 11:58:29] ID_LIKE="rhel fedora"
[2025-10-09 11:58:29] VERSION_ID="7"
[2025-10-09 11:58:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-09 11:58:29] ANSI_COLOR="0;31"
[2025-10-09 11:58:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-09 11:58:29] HOME_URL="https://www.centos.org/"
[2025-10-09 11:58:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-09 11:58:29] 
[2025-10-09 11:58:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-09 11:58:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-09 11:58:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-09 11:58:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-09 11:58:29] 
[2025-10-09 11:58:29] 2025-10-09 02:57:31,374 | INFO     | ***************************************
[2025-10-09 11:58:29] 2025-10-09 02:57:31,875 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-09 11:58:29] 2025-10-09 02:57:31,884 | INFO     | sufficient remaining disk space (41946185728 B)
[2025-10-09 11:58:29] 2025-10-09 02:57:31,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-09 11:58:29] 2025-10-09 02:57:31,884 | INFO     | current server update state: UPDATING_FINAL
[2025-10-09 11:58:29] 2025-10-09 02:57:31,884 | INFO     | update_server=False
[2025-10-09 11:58:29] 2025-10-09 02:57:31,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-09 11:58:29] 2025-10-09 02:57:31,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-09 11:58:29] 2025-10-09 02:57:31,885 | INFO     | aborting loop
[2025-10-09 11:58:29] 2025-10-09 02:57:32,038 | INFO     | all data control threads have been joined
[2025-10-09 11:58:29] 2025-10-09 02:57:32,226 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-09 11:58:29] 2025-10-09 02:57:32,887 | INFO     | [job] job monitor thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:32,889 | INFO     | [job] retrieve thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:33,011 | INFO     | [payload] validate_pre thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:33,035 | INFO     | all payload control threads have been joined
[2025-10-09 11:58:29] 2025-10-09 02:57:33,042 | INFO     | [data] control thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:33,401 | INFO     | all job control threads have been joined
[2025-10-09 11:58:29] 2025-10-09 02:57:33,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:33,607 | INFO     | [payload] validate_post thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,040 | INFO     | [payload] control thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-09 11:58:29] 2025-10-09 02:57:34,221 | INFO     | [data] copytool_in thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,231 | INFO     | [data] copytool_out thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,242 | INFO     | [payload] execute_payloads thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,330 | INFO     | [job] validate thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,342 | INFO     | [job] create_data_payload thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,406 | INFO     | [job] control thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,458 | INFO     | [payload] failed_post thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:34,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-09 11:58:29] 2025-10-09 02:57:35,839 | INFO     | [job] queue monitor thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:57:38,139 | INFO     | [data] queue_monitor thread has finished
[2025-10-09 11:58:29] 2025-10-09 02:58:02,209 | INFO     | PID=3873693 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-09 11:58:29] 2025-10-09 02:58:02,209 | INFO     | found 0 job(s) in 20 queues
[2025-10-09 11:58:29] 2025-10-09 02:58:02,209 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-09 11:58:29] 2025-10-09 02:58:02,209 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-09 11:58:29] 2025-10-09 02:58:05,996 [wrapper] supervise_pilot (15 min periods counter: 8)
[2025-10-09 11:58:29] 2025-10-09 02:58:22,530 | INFO     | [monitor] cgroup control has ended
[2025-10-09 11:58:29] 2025-10-09 02:58:24,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639928653632)>', '<ExcThread(monitor, started 140639299692288)>']
[2025-10-09 11:58:29] 2025-10-09 02:58:25,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-09 11:58:29] 2025-10-09 02:58:25,324 | INFO     | [monitor] control thread has ended
[2025-10-09 11:58:29] 2025-10-09 02:58:29,437 | INFO     | all workflow threads have been joined
[2025-10-09 11:58:29] 2025-10-09 02:58:29,437 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-09 11:58:29] 2025-10-09 02:58:29,438 | INFO     | traces error code: 0
[2025-10-09 11:58:29] 2025-10-09 02:58:29,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-09 11:58:29] 2025-10-09 02:58:29,495 [wrapper] ==== pilot stdout END ====
[2025-10-09 11:58:29] 2025-10-09 02:58:29,497 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-09 11:58:29] 2025-10-09 02:58:29,498 [wrapper] pilotpid: 3873693
[2025-10-09 11:58:29] 2025-10-09 02:58:29,500 [wrapper] Pilot exit status: 0
[2025-10-09 11:58:29] 2025-10-09 02:58:29,506 [wrapper] pandaids: 6833167357
[2025-10-09 11:58:29] 2025-10-09 02:58:29,519 [wrapper] cleanup supervisor_pilot 3896934 3873694
[2025-10-09 11:58:29] 2025-10-09 02:58:29,521 [wrapper] Test setup, not cleaning
[2025-10-09 11:58:29] 2025-10-09 02:58:29,523 [wrapper] apfmon messages muted
[2025-10-09 11:58:29] 2025-10-09 02:58:29,524 [wrapper] ==== wrapper stdout END ====
[2025-10-09 11:58:29] 2025-10-09 02:58:29,526 [wrapper] ==== wrapper stderr END ====
[2025-10-09 11:58:29]  *** Error codes and diagnostics ***
[2025-10-09 11:58:29]     "exeErrorCode": 0,
[2025-10-09 11:58:29]     "exeErrorDiag": "",
[2025-10-09 11:58:29]     "pilotErrorCode": 0,
[2025-10-09 11:58:29]     "pilotErrorDiag": "",
[2025-10-09 11:58:29]  *** Listing of results directory ***
[2025-10-09 11:58:29] total 390868
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc    552446 Oct  7 12:46 pilot3.tar.gz
[2025-10-09 11:58:29] -rwx------. 1 boinc boinc     36292 Oct  7 13:14 runpilot2-wrapper.sh
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc      5112 Oct  7 13:14 queuedata.json
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc       100 Oct  9 10:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-09 11:58:29] -rwxr-xr-x. 1 boinc boinc      7986 Oct  9 10:11 run_atlas
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc       105 Oct  9 10:11 job.xml
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc      9291 Oct  9 10:11 init_data.xml
[2025-10-09 11:58:29] -rw-r--r--. 2 boinc boinc 213114141 Oct  9 10:11 EVNT.46376901._004759.pool.root.1
[2025-10-09 11:58:29] -rw-r--r--. 2 boinc boinc     15120 Oct  9 10:11 start_atlas.sh
[2025-10-09 11:58:29] drwxrwx--x. 2 boinc boinc        68 Oct  9 10:11 shared
[2025-10-09 11:58:29] -rw-r--r--. 2 boinc boinc    565597 Oct  9 10:11 input.tar.gz
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc         0 Oct  9 10:11 boinc_lockfile
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc      2521 Oct  9 10:11 pandaJob.out
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc    979298 Oct  9 10:13 agis_schedconf.cvmfs.json
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc   1560401 Oct  9 10:13 agis_ddmendpoints.agis.ALL.json
[2025-10-09 11:58:29] drwx------. 4 boinc boinc      4096 Oct  9 10:13 pilot3
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc 180910934 Oct  9 11:55 HITS.46376905._127635.pool.root.1
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc       529 Oct  9 11:55 boinc_task_state.xml
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc      1009 Oct  9 11:56 memory_monitor_summary.json
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc    282085 Oct  9 11:56 log.46376905._127635.job.log.tgz.1
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc      7765 Oct  9 11:57 heartbeat.json
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc        95 Oct  9 11:58 pilot_heartbeat.json
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc      8192 Oct  9 11:58 boinc_mmap_file
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc        27 Oct  9 11:58 wrapper_checkpoint.txt
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc      4748 Oct  9 11:58 pilotlog.txt
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc    889121 Oct  9 11:58 log.46376905._127635.job.log.1
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc       357 Oct  9 11:58 output.list
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc       620 Oct  9 11:58 runtime_log
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc   1187840 Oct  9 11:58 result.tar.gz
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc      8661 Oct  9 11:58 runtime_log.err
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc       643 Oct  9 11:58 RQFODmeGEQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmT1VNDmi6bCRn.diag
[2025-10-09 11:58:29] -rw-r--r--. 1 boinc boinc     20852 Oct  9 11:58 stderr.txt
[2025-10-09 11:58:29] HITS file was successfully produced:
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc 180910934 Oct  9 11:55 shared/HITS.pool.root.1
[2025-10-09 11:58:29]  *** Contents of shared directory: ***
[2025-10-09 11:58:29] total 386524
[2025-10-09 11:58:29] -rw-r--r--. 2 boinc boinc 213114141 Oct  9 10:11 ATLAS.root_0
[2025-10-09 11:58:29] -rw-r--r--. 2 boinc boinc     15120 Oct  9 10:11 start_atlas.sh
[2025-10-09 11:58:29] -rw-r--r--. 2 boinc boinc    565597 Oct  9 10:11 input.tar.gz
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc 180910934 Oct  9 11:55 HITS.pool.root.1
[2025-10-09 11:58:29] -rw-------. 1 boinc boinc   1187840 Oct  9 11:58 result.tar.gz
11:58:31 (3869430): run_atlas exited; CPU time 17373.465745
11:58:31 (3869430): called boinc_finish(0)

</stderr_txt>
]]>

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