Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:44:01 (1735): wrapper (7.7.26015): starting
17:44:01 (1735): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 17:44:01] Arguments: --nthreads 12
[2025-10-07 17:44:01] Threads: 12
[2025-10-07 17:44:01] Checking for CVMFS
[2025-10-07 17:44:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 17:44:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 17:44:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 17:44:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 17:44:01] 2.11.2.0 25590 116918 90528 151448 1 1 18578859 20275200 1 130560 2 71913334 99.991 3727955 21353 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-07 17:44:01] CVMFS is ok
[2025-10-07 17:44:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 17:44:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 17:44:01] Further information can be found at the LHC@home message board.
[2025-10-07 17:44:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 17:44:01] Checking for apptainer binary...
[2025-10-07 17:44:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 17:44:01] Running /usr/bin/apptainer --version
[2025-10-07 17:44:01] apptainer version 1.3.2-1.el7
[2025-10-07 17:44:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 17:44:03] c-205-24.aglt2.org
[2025-10-07 17:44:03] apptainer works
[2025-10-07 17:44:03] Set ATHENA_PROC_NUMBER=12
[2025-10-07 17:44:03] Set ATHENA_CORE_NUMBER=12
[2025-10-07 17:44:03] Starting ATLAS job with PandaID=6833163972
[2025-10-07 17:44:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 18:49:30]  *** The last 200 lines of the pilot log: ***
[2025-10-07 18:49:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 18:49:30]  replicas=None
[2025-10-07 18:49:30]  scope=mc23_13p6TeV
[2025-10-07 18:49:30]  status=None
[2025-10-07 18:49:30]  status_code=0
[2025-10-07 18:49:30]  storage_token=
[2025-10-07 18:49:30]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6833163972/log.46376905._126426.job.log.tgz.1
[2025-10-07 18:49:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/e9/log.46376905._126426.job.log.tgz.1
[2025-10-07 18:49:30]  workdir=None
[2025-10-07 18:49:30] ]
[2025-10-07 18:49:30] 2025-10-07 22:48:18,776 | INFO     | transferring file log.46376905._126426.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6833163972/log.46376905._126426.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-07 18:49:30] 2025-10-07 22:48:18,776 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6833163972/log.46376905._126426.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._126426.job
[2025-10-07 18:49:30] 2025-10-07 22:48:18,798 | INFO     | adding to output.list: log.46376905._126426.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/e9/log.46376905._126426.job.log.tg
[2025-10-07 18:49:30] 2025-10-07 22:48:18,799 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 18:49:30] 2025-10-07 22:48:18,799 | INFO     | summary of transferred files:
[2025-10-07 18:49:30] 2025-10-07 22:48:18,799 | INFO     |  -- lfn=log.46376905._126426.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 18:49:30] 2025-10-07 22:48:18,799 | INFO     | stage-out finished correctly
[2025-10-07 18:49:30] 2025-10-07 22:48:18,883 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 18:49:30] 2025-10-07 22:48:19,672 | INFO     | job 6833163972 has state=finished
[2025-10-07 18:49:30] 2025-10-07 22:48:19,673 | INFO     | preparing for final server update for job 6833163972 in state='finished'
[2025-10-07 18:49:30] 2025-10-07 22:48:19,673 | INFO     | this job has now completed (state=finished)
[2025-10-07 18:49:30] 2025-10-07 22:48:19,673 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 18:49:30] 2025-10-07 22:48:19,673 | INFO     | log transfer has been attempted: DONE
[2025-10-07 18:49:30] 2025-10-07 22:48:19,674 | INFO     | job 6833163972 has finished - writing final server update
[2025-10-07 18:49:30] 2025-10-07 22:48:19,674 | INFO     | total number of processed events: 400 (read)
[2025-10-07 18:49:30] 2025-10-07 22:48:19,675 | INFO     | executing command: lscpu
[2025-10-07 18:49:30] 2025-10-07 22:48:19,701 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 18:49:30] 2025-10-07 22:48:19,902 | INFO     | time since job start (3840s) is within the limit (172800.0s)
[2025-10-07 18:49:30] 2025-10-07 22:48:20,945 | WARNING  | process 12972 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 18:49:30] 2025-10-07 22:48:20,946 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833163972/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 18:49:30] 2025-10-07 22:48:21,038 | INFO     | number of running child processes to parent process 12972: 1
[2025-10-07 18:49:30] 2025-10-07 22:48:21,038 | INFO     | maximum number of monitored processes: 6
[2025-10-07 18:49:30] 2025-10-07 22:48:21,908 | INFO     | time since job start (3842s) is within the limit (172800.0s)
[2025-10-07 18:49:30] 2025-10-07 22:48:23,541 | INFO     | monitor loop #286: job 0:6833163972 is in state 'finished'
[2025-10-07 18:49:30] 2025-10-07 22:48:23,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 18:49:30] 2025-10-07 22:48:23,914 | INFO     | time since job start (3844s) is within the limit (172800.0s)
[2025-10-07 18:49:30] 2025-10-07 22:48:24,369 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-07 18:49:30] 2025-10-07 22:48:24,373 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1806.5833333333333
[2025-10-07 18:49:30] 2025-10-07 22:48:24,375 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833163972/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 18:49:30] 2025-10-07 22:48:24,376 | INFO     | extracted standard info from prmon json
[2025-10-07 18:49:30] 2025-10-07 22:48:24,377 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 18:49:30] 2025-10-07 22:48:24,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 18:49:30] 2025-10-07 22:48:24,377 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 18:49:30] 2025-10-07 22:48:24,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 18:49:30] 2025-10-07 22:48:24,379 | INFO     | fitting pss+swap vs Time
[2025-10-07 18:49:30] 2025-10-07 22:48:24,379 | INFO     | sum of square deviations: 54438230.0
[2025-10-07 18:49:30] 2025-10-07 22:48:24,380 | INFO     | sum of deviations: -4459322650.0
[2025-10-07 18:49:30] 2025-10-07 22:48:24,380 | INFO     | mean x: 1759875469.5
[2025-10-07 18:49:30] 2025-10-07 22:48:24,380 | INFO     | mean y: 2736674.5
[2025-10-07 18:49:30] 2025-10-07 22:48:24,380 | INFO     | -- intersect: 144163421956.16208
[2025-10-07 18:49:30] 2025-10-07 22:48:24,380 | INFO     | intersect: 144163421956.16208
[2025-10-07 18:49:30] 2025-10-07 22:48:24,380 | INFO     | chi2: 0.05104980422319186
[2025-10-07 18:49:30] 2025-10-07 22:48:24,380 | INFO     | -- intersect: 144163421956.16208
[2025-10-07 18:49:30] 2025-10-07 22:48:24,381 | INFO     | current memory leak: -81.92 B/s (using 56 data points, chi2=0.05)
[2025-10-07 18:49:30] 2025-10-07 22:48:24,381 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-07 18:49:30] 2025-10-07 22:48:24,381 | INFO     | ..............................
[2025-10-07 18:49:30] 2025-10-07 22:48:24,381 | INFO     | . Timing measurements:
[2025-10-07 18:49:30] 2025-10-07 22:48:24,381 | INFO     | . get job = 0 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,381 | INFO     | . initial setup = 2 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,381 | INFO     | . payload setup = 7 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,382 | INFO     | . stage-in = 0 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,382 | INFO     | . payload execution = 3812 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,382 | INFO     | . stage-out = 0 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,382 | INFO     | . log creation = 0 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,382 | INFO     | ..............................
[2025-10-07 18:49:30] 2025-10-07 22:48:24,552 | INFO     | 
[2025-10-07 18:49:30] 2025-10-07 22:48:24,553 | INFO     | job summary report
[2025-10-07 18:49:30] 2025-10-07 22:48:24,553 | INFO     | --------------------------------------------------
[2025-10-07 18:49:30] 2025-10-07 22:48:24,553 | INFO     | PanDA job id: 6833163972
[2025-10-07 18:49:30] 2025-10-07 22:48:24,553 | INFO     | task id: 46376905
[2025-10-07 18:49:30] 2025-10-07 22:48:24,553 | INFO     | errors: (none)
[2025-10-07 18:49:30] 2025-10-07 22:48:24,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 18:49:30] 2025-10-07 22:48:24,554 | INFO     | pilot state: finished 
[2025-10-07 18:49:30] 2025-10-07 22:48:24,554 | INFO     | transexitcode: 0
[2025-10-07 18:49:30] 2025-10-07 22:48:24,554 | INFO     | exeerrorcode: 0
[2025-10-07 18:49:30] 2025-10-07 22:48:24,554 | INFO     | exeerrordiag: 
[2025-10-07 18:49:30] 2025-10-07 22:48:24,554 | INFO     | exitcode: 0
[2025-10-07 18:49:30] 2025-10-07 22:48:24,554 | INFO     | exitmsg: OK
[2025-10-07 18:49:30] 2025-10-07 22:48:24,555 | INFO     | cpuconsumptiontime: 40880 s
[2025-10-07 18:49:30] 2025-10-07 22:48:24,555 | INFO     | nevents: 400
[2025-10-07 18:49:30] 2025-10-07 22:48:24,555 | INFO     | neventsw: 0
[2025-10-07 18:49:30] 2025-10-07 22:48:24,555 | INFO     | pid: 12972
[2025-10-07 18:49:30] 2025-10-07 22:48:24,555 | INFO     | pgrp: 12972
[2025-10-07 18:49:30] 2025-10-07 22:48:24,556 | INFO     | corecount: 12
[2025-10-07 18:49:30] 2025-10-07 22:48:24,556 | INFO     | event service: False
[2025-10-07 18:49:30] 2025-10-07 22:48:24,556 | INFO     | sizes: {0: 2348649, 1: 2348848, 6: 2349110, 11: 2349138, 3823: 2374892, 3824: 2384074, 3830: 2384212}
[2025-10-07 18:49:30] 2025-10-07 22:48:24,556 | INFO     | --------------------------------------------------
[2025-10-07 18:49:30] 2025-10-07 22:48:24,556 | INFO     | 
[2025-10-07 18:49:30] 2025-10-07 22:48:24,556 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-07 18:49:30] 2025-10-07 22:48:24,581 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,582 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,582 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,582 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,582 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,583 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,583 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,583 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,583 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,584 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,584 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,584 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,584 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,584 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,585 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 18:49:30] 2025-10-07 22:48:24,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,585 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 18:49:30] 2025-10-07 22:48:24,585 | INFO     | job 6833163972 has completed (purged errors)
[2025-10-07 18:49:30] 2025-10-07 22:48:24,585 | INFO     | overall cleanup function is called
[2025-10-07 18:49:30] 2025-10-07 22:48:25,592 | INFO     | --- collectZombieJob: --- 10, [12972]
[2025-10-07 18:49:30] 2025-10-07 22:48:25,592 | INFO     | zombie collector waiting for pid 12972
[2025-10-07 18:49:30] 2025-10-07 22:48:25,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 18:49:30] 2025-10-07 22:48:25,592 | INFO     | collected zombie processes
[2025-10-07 18:49:30] 2025-10-07 22:48:25,592 | INFO     | will attempt to kill all subprocesses of pid=12972
[2025-10-07 18:49:30] 2025-10-07 22:48:25,683 | INFO     | process IDs to be killed: [12972] (in reverse order)
[2025-10-07 18:49:30] 2025-10-07 22:48:25,734 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 18:49:30] 2025-10-07 22:48:25,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 18:49:30] 2025-10-07 22:48:25,738 | INFO     | did not find any defunct processes belonging to 12972
[2025-10-07 18:49:30] 2025-10-07 22:48:25,741 | INFO     | did not find any defunct processes belonging to 12972
[2025-10-07 18:49:30] 2025-10-07 22:48:25,741 | INFO     | ready for new job
[2025-10-07 18:49:30] 2025-10-07 22:48:25,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 18:49:30] 2025-10-07 22:48:25,742 | INFO     | ***************************************
[2025-10-07 18:49:30] 2025-10-07 22:48:25,742 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 18:49:30] 2025-10-07 22:48:25,742 | INFO     | ***************************************
[2025-10-07 18:49:30] 2025-10-07 22:48:25,742 | INFO     | 
[2025-10-07 18:49:30] 2025-10-07 22:48:25,743 | INFO     | architecture information:
[2025-10-07 18:49:30] 2025-10-07 22:48:25,743 | INFO     | executing command: cat /etc/os-release
[2025-10-07 18:49:30] 2025-10-07 22:48:25,759 | INFO     | cat /etc/os-release:
[2025-10-07 18:49:30] NAME="CentOS Linux"
[2025-10-07 18:49:30] VERSION="7 (Core)"
[2025-10-07 18:49:30] ID="centos"
[2025-10-07 18:49:30] ID_LIKE="rhel fedora"
[2025-10-07 18:49:30] VERSION_ID="7"
[2025-10-07 18:49:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 18:49:30] ANSI_COLOR="0;31"
[2025-10-07 18:49:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 18:49:30] HOME_URL="https://www.centos.org/"
[2025-10-07 18:49:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 18:49:30] 
[2025-10-07 18:49:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 18:49:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 18:49:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 18:49:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 18:49:30] 
[2025-10-07 18:49:30] 2025-10-07 22:48:25,760 | INFO     | ***************************************
[2025-10-07 18:49:30] 2025-10-07 22:48:26,263 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-07 18:49:30] 2025-10-07 22:48:26,282 | INFO     | sufficient remaining disk space (29392633856 B)
[2025-10-07 18:49:30] 2025-10-07 22:48:26,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 18:49:30] 2025-10-07 22:48:26,282 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 18:49:30] 2025-10-07 22:48:26,282 | INFO     | update_server=False
[2025-10-07 18:49:30] 2025-10-07 22:48:26,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 18:49:30] 2025-10-07 22:48:26,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:49:30] 2025-10-07 22:48:26,406 | INFO     | all job control threads have been joined
[2025-10-07 18:49:30] 2025-10-07 22:48:26,765 | INFO     | all payload control threads have been joined
[2025-10-07 18:49:30] 2025-10-07 22:48:26,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 18:49:30] 2025-10-07 22:48:27,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:49:30] 2025-10-07 22:48:27,049 | INFO     | aborting loop
[2025-10-07 18:49:30] 2025-10-07 22:48:27,288 | INFO     | [job] retrieve thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:27,289 | INFO     | [job] queue monitor thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:27,293 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:27,329 | INFO     | all data control threads have been joined
[2025-10-07 18:49:30] 2025-10-07 22:48:27,412 | INFO     | [job] control thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:27,438 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:27,752 | INFO     | [payload] failed_post thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:27,770 | INFO     | [payload] control thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:27,999 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:28,055 | INFO     | [job] job monitor thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:28,082 | INFO     | [data] copytool_in thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:28,334 | INFO     | [data] control thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:28,688 | INFO     | [payload] validate_post thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:28,775 | INFO     | [job] validate thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:28,903 | INFO     | [data] copytool_out thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:29,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 18:49:30] 2025-10-07 22:48:33,477 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:37,001 | INFO     | job.realtimelogging is not enabled
[2025-10-07 18:49:30] 2025-10-07 22:48:38,007 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 18:49:30] 2025-10-07 22:48:57,119 | INFO     | PID=5673 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-07 18:49:30] 2025-10-07 22:48:57,119 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 18:49:30] 2025-10-07 22:48:57,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 18:49:30] 2025-10-07 22:48:57,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 18:49:30] 2025-10-07 22:49:24,457 | INFO     | [monitor] cgroup control has ended
[2025-10-07 18:49:30] 2025-10-07 22:49:25,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638878086976)>', '<ExcThread(monitor, started 140638158841600)>']
[2025-10-07 18:49:30] 2025-10-07 22:49:26,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 18:49:30] 2025-10-07 22:49:26,261 | INFO     | [monitor] control thread has ended
[2025-10-07 18:49:30] 2025-10-07 22:49:30,488 | INFO     | all workflow threads have been joined
[2025-10-07 18:49:30] 2025-10-07 22:49:30,488 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 18:49:30] 2025-10-07 22:49:30,498 | INFO     | traces error code: 0
[2025-10-07 18:49:30] 2025-10-07 22:49:30,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 18:49:30] 2025-10-07 22:49:30,609 [wrapper] ==== pilot stdout END ====
[2025-10-07 18:49:30] 2025-10-07 22:49:30,613 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 18:49:30] 2025-10-07 22:49:30,617 [wrapper] pilotpid: 5673
[2025-10-07 18:49:30] 2025-10-07 22:49:30,621 [wrapper] Pilot exit status: 0
[2025-10-07 18:49:30] 2025-10-07 22:49:30,638 [wrapper] pandaids: 6833163972
[2025-10-07 18:49:30] 2025-10-07 22:49:30,684 [wrapper] cleanup supervisor_pilot 16322 5674
[2025-10-07 18:49:30] 2025-10-07 22:49:30,688 [wrapper] Test setup, not cleaning
[2025-10-07 18:49:30] 2025-10-07 22:49:30,692 [wrapper] apfmon messages muted
[2025-10-07 18:49:30] 2025-10-07 22:49:30,696 [wrapper] ==== wrapper stdout END ====
[2025-10-07 18:49:30] 2025-10-07 22:49:30,700 [wrapper] ==== wrapper stderr END ====
[2025-10-07 18:49:30]  *** Error codes and diagnostics ***
[2025-10-07 18:49:30]     "exeErrorCode": 0,
[2025-10-07 18:49:30]     "exeErrorDiag": "",
[2025-10-07 18:49:30]     "pilotErrorCode": 0,
[2025-10-07 18:49:30]     "pilotErrorDiag": "",
[2025-10-07 18:49:30]  *** Listing of results directory ***
[2025-10-07 18:49:30] total 391744
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 22:44 pilot3.tar.gz
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 23:06 queuedata.json
[2025-10-07 18:49:30] -rwx------ 1 boincer umatlas     36292 Oct  6 23:07 runpilot2-wrapper.sh
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas       100 Oct  7 17:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 18:49:30] -rwxr-xr-x 1 boincer umatlas      7986 Oct  7 17:44 run_atlas
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas       105 Oct  7 17:44 job.xml
[2025-10-07 18:49:30] -rw-r--r-- 2 boincer umatlas 214538368 Oct  7 17:44 EVNT.46376901._004699.pool.root.1
[2025-10-07 18:49:30] -rw-r--r-- 2 boincer umatlas     15120 Oct  7 17:44 start_atlas.sh
[2025-10-07 18:49:30] drwxrwx--x 2 boincer umatlas      4096 Oct  7 17:44 shared
[2025-10-07 18:49:30] -rw-r--r-- 2 boincer umatlas    565604 Oct  7 17:44 input.tar.gz
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas         0 Oct  7 17:44 boinc_lockfile
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas      2521 Oct  7 17:44 pandaJob.out
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas    979849 Oct  7 17:44 agis_schedconf.cvmfs.json
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas   1560401 Oct  7 17:44 agis_ddmendpoints.agis.ALL.json
[2025-10-07 18:49:30] drwx------ 4 boincer umatlas      4096 Oct  7 17:44 pilot3
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas 180810952 Oct  7 18:47 HITS.46376905._126426.pool.root.1
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas       529 Oct  7 18:47 boinc_task_state.xml
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas        95 Oct  7 18:48 pilot_heartbeat.json
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas      1046 Oct  7 18:48 memory_monitor_summary.json
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas    385156 Oct  7 18:48 log.46376905._126426.job.log.tgz.1
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas      7855 Oct  7 18:48 heartbeat.json
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas      5953 Oct  7 18:49 init_data.xml
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas      8192 Oct  7 18:49 boinc_mmap_file
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas        27 Oct  7 18:49 wrapper_checkpoint.txt
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas      4817 Oct  7 18:49 pilotlog.txt
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas    563277 Oct  7 18:49 log.46376905._126426.job.log.1
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas       357 Oct  7 18:49 output.list
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas       620 Oct  7 18:49 runtime_log
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas    972800 Oct  7 18:49 result.tar.gz
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas      8705 Oct  7 18:49 runtime_log.err
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas       659 Oct  7 18:49 6NBNDmfDDQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRoVNDmfVFN3n.diag
[2025-10-07 18:49:30] -rw-r--r-- 1 boincer umatlas     21832 Oct  7 18:49 stderr.txt
[2025-10-07 18:49:30] HITS file was successfully produced:
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas 180810952 Oct  7 18:47 shared/HITS.pool.root.1
[2025-10-07 18:49:30]  *** Contents of shared directory: ***
[2025-10-07 18:49:30] total 387616
[2025-10-07 18:49:30] -rw-r--r-- 2 boincer umatlas 214538368 Oct  7 17:44 ATLAS.root_0
[2025-10-07 18:49:30] -rw-r--r-- 2 boincer umatlas     15120 Oct  7 17:44 start_atlas.sh
[2025-10-07 18:49:30] -rw-r--r-- 2 boincer umatlas    565604 Oct  7 17:44 input.tar.gz
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas 180810952 Oct  7 18:47 HITS.pool.root.1
[2025-10-07 18:49:30] -rw------- 1 boincer umatlas    972800 Oct  7 18:49 result.tar.gz
18:49:32 (1735): run_atlas exited; CPU time 40858.408190
18:49:32 (1735): called boinc_finish(0)

</stderr_txt>
]]>

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