Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:20:20 (85330): wrapper (7.7.26015): starting
17:20:20 (85330): wrapper: running run_atlas (--nthreads 11)
[2025-10-07 17:20:20] Arguments: --nthreads 11
[2025-10-07 17:20:20] Threads: 11
[2025-10-07 17:20:20] Checking for CVMFS
[2025-10-07 17:20:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 17:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 17:20:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 17:20:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 17:20:21] 2.13.2.0 2935877 117281 608352 151448 3 180 38422183 40960000 41164 16776704 0 514712176 99.767 320871530 17615 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-07 17:20:21] CVMFS is ok
[2025-10-07 17:20:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 17:20:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 17:20:21] Further information can be found at the LHC@home message board.
[2025-10-07 17:20:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 17:20:21] Checking for apptainer binary...
[2025-10-07 17:20:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 17:20:21] Running /usr/bin/apptainer --version
[2025-10-07 17:20:21] apptainer version 1.4.2-1.el9
[2025-10-07 17:20:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 17:20:21] c7-2-17.aglt2.org
[2025-10-07 17:20:21] apptainer works
[2025-10-07 17:20:21] Set ATHENA_PROC_NUMBER=11
[2025-10-07 17:20:21] Set ATHENA_CORE_NUMBER=11
[2025-10-07 17:20:21] Starting ATLAS job with PandaID=6833429098
[2025-10-07 17:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 18:10:45]  *** The last 200 lines of the pilot log: ***
[2025-10-07 18:10:45]  status=None
[2025-10-07 18:10:45]  status_code=0
[2025-10-07 18:10:45]  storage_token=
[2025-10-07 18:10:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6833429098/log.46376905._132774.job.log.tgz.1
[2025-10-07 18:10:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/b7/log.46376905._132774.job.log.tgz.1
[2025-10-07 18:10:45]  workdir=None
[2025-10-07 18:10:45] ]
[2025-10-07 18:10:45] 2025-10-07 22:09:54,968 | INFO     | transferring file log.46376905._132774.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6833429098/log.46376905._132774.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-07 18:10:45] 2025-10-07 22:09:54,968 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6833429098/log.46376905._132774.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._132774.job
[2025-10-07 18:10:45] 2025-10-07 22:09:54,985 | INFO     | adding to output.list: log.46376905._132774.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/b7/log.46376905._132774.job.log.tg
[2025-10-07 18:10:45] 2025-10-07 22:09:54,986 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 18:10:45] 2025-10-07 22:09:54,986 | INFO     | summary of transferred files:
[2025-10-07 18:10:45] 2025-10-07 22:09:54,986 | INFO     |  -- lfn=log.46376905._132774.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 18:10:45] 2025-10-07 22:09:54,986 | INFO     | stage-out finished correctly
[2025-10-07 18:10:45] 2025-10-07 22:09:55,038 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 18:10:45] 2025-10-07 22:09:55,228 | INFO     | monitor loop #212: job 0:6833429098 is in state 'finished'
[2025-10-07 18:10:45] 2025-10-07 22:09:55,228 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 18:10:45] 2025-10-07 22:09:56,850 | INFO     | time since job start (2962s) is within the limit (172800.0s)
[2025-10-07 18:10:45] 2025-10-07 22:09:57,044 | INFO     | job 6833429098 has state=finished
[2025-10-07 18:10:45] 2025-10-07 22:09:57,044 | INFO     | preparing for final server update for job 6833429098 in state='finished'
[2025-10-07 18:10:45] 2025-10-07 22:09:57,044 | INFO     | this job has now completed (state=finished)
[2025-10-07 18:10:45] 2025-10-07 22:09:57,044 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 18:10:45] 2025-10-07 22:09:57,044 | INFO     | log transfer has been attempted: DONE
[2025-10-07 18:10:45] 2025-10-07 22:09:57,045 | INFO     | job 6833429098 has finished - writing final server update
[2025-10-07 18:10:45] 2025-10-07 22:09:57,045 | INFO     | total number of processed events: 400 (read)
[2025-10-07 18:10:45] 2025-10-07 22:09:57,046 | INFO     | executing command: lscpu
[2025-10-07 18:10:45] 2025-10-07 22:09:57,120 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 18:10:45] 2025-10-07 22:09:57,731 | INFO     | monitor loop #213: job 0:6833429098 is in state 'finished'
[2025-10-07 18:10:45] 2025-10-07 22:09:57,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 18:10:45] 2025-10-07 22:09:58,482 | INFO     | PID=91701 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-07 18:10:45] 2025-10-07 22:09:58,483 | INFO     | .. there are 52 such processes running
[2025-10-07 18:10:45] 2025-10-07 22:09:59,483 | INFO     | time since job start (2965s) is within the limit (172800.0s)
[2025-10-07 18:10:45] 2025-10-07 22:10:00,234 | INFO     | monitor loop #214: job 0:6833429098 is in state 'finished'
[2025-10-07 18:10:45] 2025-10-07 22:10:00,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,428 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 18:10:45] 2025-10-07 22:10:01,451 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3357.352124999998
[2025-10-07 18:10:45] 2025-10-07 22:10:01,464 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833429098/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,464 | INFO     | extracted standard info from prmon json
[2025-10-07 18:10:45] 2025-10-07 22:10:01,464 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 18:10:45] 2025-10-07 22:10:01,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 18:10:45] 2025-10-07 22:10:01,465 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 18:10:45] 2025-10-07 22:10:01,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 18:10:45] 2025-10-07 22:10:01,466 | INFO     | fitting pss+swap vs Time
[2025-10-07 18:10:45] 2025-10-07 22:10:01,466 | INFO     | sum of square deviations: 21358540.0
[2025-10-07 18:10:45] 2025-10-07 22:10:01,466 | INFO     | sum of deviations: 364434069.00000006
[2025-10-07 18:10:45] 2025-10-07 22:10:01,466 | INFO     | mean x: 1759873588.0
[2025-10-07 18:10:45] 2025-10-07 22:10:01,466 | INFO     | mean y: 2909555.951219512
[2025-10-07 18:10:45] 2025-10-07 22:10:01,466 | INFO     | -- intersect: -30025261498.833878
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | intersect: -30025261498.833878
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | chi2: 0.0012353107815356488
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | -- intersect: -30025261498.833878
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | current memory leak: 17.06 B/s (using 41 data points, chi2=0.00)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | could have reported an average CPU frequency of 3399 MHz (5 samples)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | ..............................
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | . Timing measurements:
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | . get job = 0 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | . initial setup = 2 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | . payload setup = 6 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | . stage-in = 0 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | . payload execution = 2933 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,467 | INFO     | . stage-out = 0 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,468 | INFO     | . log creation = 0 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,468 | INFO     | ..............................
[2025-10-07 18:10:45] 2025-10-07 22:10:01,493 | INFO     | time since job start (2967s) is within the limit (172800.0s)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | 
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | job summary report
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | --------------------------------------------------
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | PanDA job id: 6833429098
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | task id: 46376905
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | errors: (none)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | pilot state: finished 
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | transexitcode: 0
[2025-10-07 18:10:45] 2025-10-07 22:10:01,536 | INFO     | exeerrorcode: 0
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | exeerrordiag: 
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | exitcode: 0
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | exitmsg: OK
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | cpuconsumptiontime: 27339 s
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | nevents: 400
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | neventsw: 0
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | pid: 99337
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | pgrp: 99337
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | corecount: 11
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | event service: False
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | sizes: {0: 2348814, 5: 2349076, 11: 2349132, 2943: 2374453, 2944: 2383507, 2950: 2383677}
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | --------------------------------------------------
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | 
[2025-10-07 18:10:45] 2025-10-07 22:10:01,537 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-07 18:10:45] 2025-10-07 22:10:01,558 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,558 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,558 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,558 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,558 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,558 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,558 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | job 6833429098 has completed (purged errors)
[2025-10-07 18:10:45] 2025-10-07 22:10:01,559 | INFO     | overall cleanup function is called
[2025-10-07 18:10:45] 2025-10-07 22:10:02,566 | INFO     | --- collectZombieJob: --- 10, [99337]
[2025-10-07 18:10:45] 2025-10-07 22:10:02,566 | INFO     | zombie collector waiting for pid 99337
[2025-10-07 18:10:45] 2025-10-07 22:10:02,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 18:10:45] 2025-10-07 22:10:02,566 | INFO     | collected zombie processes
[2025-10-07 18:10:45] 2025-10-07 22:10:02,566 | INFO     | will attempt to kill all subprocesses of pid=99337
[2025-10-07 18:10:45] 2025-10-07 22:10:03,077 | INFO     | process IDs to be killed: [99337] (in reverse order)
[2025-10-07 18:10:45] 2025-10-07 22:10:03,259 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 18:10:45] 2025-10-07 22:10:03,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 18:10:45] 2025-10-07 22:10:03,281 | INFO     | did not find any defunct processes belonging to 99337
[2025-10-07 18:10:45] 2025-10-07 22:10:03,300 | INFO     | did not find any defunct processes belonging to 99337
[2025-10-07 18:10:45] 2025-10-07 22:10:03,300 | INFO     | ready for new job
[2025-10-07 18:10:45] 2025-10-07 22:10:03,301 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 18:10:45] 2025-10-07 22:10:03,301 | INFO     | ***************************************
[2025-10-07 18:10:45] 2025-10-07 22:10:03,302 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 18:10:45] 2025-10-07 22:10:03,302 | INFO     | ***************************************
[2025-10-07 18:10:45] 2025-10-07 22:10:03,302 | INFO     | 
[2025-10-07 18:10:45] 2025-10-07 22:10:03,318 | INFO     | architecture information:
[2025-10-07 18:10:45] 2025-10-07 22:10:03,318 | INFO     | executing command: cat /etc/os-release
[2025-10-07 18:10:45] 2025-10-07 22:10:03,335 | INFO     | cat /etc/os-release:
[2025-10-07 18:10:45] NAME="CentOS Linux"
[2025-10-07 18:10:45] VERSION="7 (Core)"
[2025-10-07 18:10:45] ID="centos"
[2025-10-07 18:10:45] ID_LIKE="rhel fedora"
[2025-10-07 18:10:45] VERSION_ID="7"
[2025-10-07 18:10:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 18:10:45] ANSI_COLOR="0;31"
[2025-10-07 18:10:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 18:10:45] HOME_URL="https://www.centos.org/"
[2025-10-07 18:10:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 18:10:45] 
[2025-10-07 18:10:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 18:10:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 18:10:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 18:10:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 18:10:45] 
[2025-10-07 18:10:45] 2025-10-07 22:10:03,335 | INFO     | ***************************************
[2025-10-07 18:10:45] 2025-10-07 22:10:03,838 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-07 18:10:45] 2025-10-07 22:10:03,857 | INFO     | sufficient remaining disk space (129851457536 B)
[2025-10-07 18:10:45] 2025-10-07 22:10:03,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 18:10:45] 2025-10-07 22:10:03,858 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 18:10:45] 2025-10-07 22:10:03,858 | INFO     | update_server=False
[2025-10-07 18:10:45] 2025-10-07 22:10:03,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 18:10:45] 2025-10-07 22:10:03,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 18:10:45] 2025-10-07 22:10:03,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:10:45] 2025-10-07 22:10:03,859 | INFO     | aborting loop
[2025-10-07 18:10:45] 2025-10-07 22:10:04,648 | INFO     | all data control threads have been joined
[2025-10-07 18:10:45] 2025-10-07 22:10:04,798 | INFO     | all job control threads have been joined
[2025-10-07 18:10:45] 2025-10-07 22:10:04,863 | INFO     | [job] retrieve thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:04,863 | INFO     | [job] job monitor thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,077 | INFO     | [payload] validate_post thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,210 | INFO     | all payload control threads have been joined
[2025-10-07 18:10:45] 2025-10-07 22:10:05,259 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,460 | INFO     | [job] validate thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,584 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 18:10:45] 2025-10-07 22:10:05,653 | INFO     | [data] control thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,653 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,803 | INFO     | [job] control thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,863 | INFO     | [data] copytool_out thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:05,998 | INFO     | [data] copytool_in thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:06,215 | INFO     | [payload] control thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:06,354 | INFO     | [payload] failed_post thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:06,545 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:10:45] 2025-10-07 22:10:07,550 | INFO     | [job] queue monitor thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:09,619 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:14,341 | INFO     | job.realtimelogging is not enabled
[2025-10-07 18:10:45] 2025-10-07 22:10:15,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 18:10:45] 2025-10-07 22:10:35,316 | INFO     | PID=91701 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 18:10:45] 2025-10-07 22:10:35,316 | INFO     | .. there are 52 such processes running
[2025-10-07 18:10:45] 2025-10-07 22:10:35,317 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 18:10:45] 2025-10-07 22:10:35,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 18:10:45] 2025-10-07 22:10:35,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 18:10:45] 2025-10-07 22:10:39,134 | INFO     | [monitor] cgroup control has ended
[2025-10-07 18:10:45] 2025-10-07 22:10:40,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140144968681280)>', '<ExcThread(monitor, started 140144036275968)>']
[2025-10-07 18:10:45] 2025-10-07 22:10:40,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 18:10:45] 2025-10-07 22:10:40,341 | INFO     | [monitor] control thread has ended
[2025-10-07 18:10:45] 2025-10-07 22:10:45,090 | INFO     | all workflow threads have been joined
[2025-10-07 18:10:45] 2025-10-07 22:10:45,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 18:10:45] 2025-10-07 22:10:45,090 | INFO     | traces error code: 0
[2025-10-07 18:10:45] 2025-10-07 22:10:45,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 18:10:45] 2025-10-07 22:10:45,242 [wrapper] ==== pilot stdout END ====
[2025-10-07 18:10:45] 2025-10-07 22:10:45,244 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 18:10:45] 2025-10-07 22:10:45,246 [wrapper] pilotpid: 91701
[2025-10-07 18:10:45] 2025-10-07 22:10:45,249 [wrapper] Pilot exit status: 0
[2025-10-07 18:10:45] 2025-10-07 22:10:45,262 [wrapper] pandaids: 6833429098
[2025-10-07 18:10:45] 2025-10-07 22:10:45,382 [wrapper] cleanup supervisor_pilot  400905 91702
[2025-10-07 18:10:45] 2025-10-07 22:10:45,384 [wrapper] Test setup, not cleaning
[2025-10-07 18:10:45] 2025-10-07 22:10:45,386 [wrapper] apfmon messages muted
[2025-10-07 18:10:45] 2025-10-07 22:10:45,389 [wrapper] ==== wrapper stdout END ====
[2025-10-07 18:10:45] 2025-10-07 22:10:45,391 [wrapper] ==== wrapper stderr END ====
[2025-10-07 18:10:45]  *** Error codes and diagnostics ***
[2025-10-07 18:10:45]     "exeErrorCode": 0,
[2025-10-07 18:10:45]     "exeErrorDiag": "",
[2025-10-07 18:10:45]     "pilotErrorCode": 0,
[2025-10-07 18:10:45]     "pilotErrorDiag": "",
[2025-10-07 18:10:45]  *** Listing of results directory ***
[2025-10-07 18:10:45] total 393688
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas    552446 Oct  7 06:05 pilot3.tar.gz
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas      5112 Oct  7 06:25 queuedata.json
[2025-10-07 18:10:45] -rwx------. 1 boincer umatlas     36292 Oct  7 06:27 runpilot2-wrapper.sh
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas       100 Oct  7 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 18:10:45] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 17:20 run_atlas
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas       105 Oct  7 17:20 job.xml
[2025-10-07 18:10:45] -rw-r--r--. 2 boincer umatlas 213719294 Oct  7 17:20 EVNT.46376901._004945.pool.root.1
[2025-10-07 18:10:45] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 17:20 start_atlas.sh
[2025-10-07 18:10:45] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 17:20 shared
[2025-10-07 18:10:45] -rw-r--r--. 2 boincer umatlas    565602 Oct  7 17:20 input.tar.gz
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas         0 Oct  7 17:20 boinc_lockfile
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas      2518 Oct  7 17:20 pandaJob.out
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas    979849 Oct  7 17:20 agis_schedconf.cvmfs.json
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas   1560401 Oct  7 17:20 agis_ddmendpoints.agis.ALL.json
[2025-10-07 18:10:45] drwx------. 4 boincer umatlas      4096 Oct  7 17:20 pilot3
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas      6936 Oct  7 18:02 init_data.xml
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas 183948664 Oct  7 18:09 HITS.46376905._132774.pool.root.1
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas       529 Oct  7 18:09 boinc_task_state.xml
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas      1048 Oct  7 18:09 memory_monitor_summary.json
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas    335068 Oct  7 18:09 log.46376905._132774.job.log.tgz.1
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas      7799 Oct  7 18:10 heartbeat.json
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas        95 Oct  7 18:10 pilot_heartbeat.json
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 18:10 boinc_mmap_file
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas        27 Oct  7 18:10 wrapper_checkpoint.txt
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas      4895 Oct  7 18:10 pilotlog.txt
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas    450735 Oct  7 18:10 log.46376905._132774.job.log.1
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas       357 Oct  7 18:10 output.list
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas       620 Oct  7 18:10 runtime_log
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas    808960 Oct  7 18:10 result.tar.gz
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas      8700 Oct  7 18:10 runtime_log.err
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas       656 Oct  7 18:10 hSXKDmL6JQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmykWNDmcixDpn.diag
[2025-10-07 18:10:45] -rw-r--r--. 1 boincer umatlas     22046 Oct  7 18:10 stderr.txt
[2025-10-07 18:10:45] HITS file was successfully produced:
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas 183948664 Oct  7 18:09 shared/HITS.pool.root.1
[2025-10-07 18:10:45]  *** Contents of shared directory: ***
[2025-10-07 18:10:45] total 389720
[2025-10-07 18:10:45] -rw-r--r--. 2 boincer umatlas 213719294 Oct  7 17:20 ATLAS.root_0
[2025-10-07 18:10:45] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 17:20 start_atlas.sh
[2025-10-07 18:10:45] -rw-r--r--. 2 boincer umatlas    565602 Oct  7 17:20 input.tar.gz
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas 183948664 Oct  7 18:09 HITS.pool.root.1
[2025-10-07 18:10:45] -rw-------. 1 boincer umatlas    808960 Oct  7 18:10 result.tar.gz
18:10:46 (85330): run_atlas exited; CPU time 27377.769309
18:10:46 (85330): called boinc_finish(0)

</stderr_txt>
]]>

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