Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
16:47:39 (2238026): wrapper (7.7.26015): starting
16:47:39 (2238026): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 16:47:39] Arguments: --nthreads 12
[2025-10-07 16:47:39] Threads: 12
[2025-10-07 16:47:39] Checking for CVMFS
[2025-10-07 16:47:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 16:47:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 16:47:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 16:47:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 16:47:39] 2.13.2.0 193085 6896 54524 151448 3 188 16459202 16777216 916 130560 0 26112819 99.998 227985 1202 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-07 16:47:39] CVMFS is ok
[2025-10-07 16:47:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 16:47:39] Checking for apptainer binary...
[2025-10-07 16:47:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 16:47:39] Running /usr/bin/apptainer --version
[2025-10-07 16:47:39] apptainer version 1.3.0-bp160.1.36
[2025-10-07 16:47:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 16:47:39] boinc-runner
[2025-10-07 16:47:39] apptainer works
[2025-10-07 16:47:39] Set ATHENA_PROC_NUMBER=12
[2025-10-07 16:47:39] Set ATHENA_CORE_NUMBER=12
[2025-10-07 16:47:39] Starting ATLAS job with PandaID=6835263737
[2025-10-07 16:47:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 17:14:53]  *** The last 200 lines of the pilot log: ***
[2025-10-07 17:14:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 17:14:53]  replicas=None
[2025-10-07 17:14:53]  scope=mc23_13p6TeV
[2025-10-07 17:14:53]  status=None
[2025-10-07 17:14:53]  status_code=0
[2025-10-07 17:14:53]  storage_token=
[2025-10-07 17:14:53]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6835263737/log.46376905._135385.job.log.tgz.1
[2025-10-07 17:14:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/8c/log.46376905._135385.job.log.tgz.1
[2025-10-07 17:14:53]  workdir=None
[2025-10-07 17:14:53] ]
[2025-10-07 17:14:53] 2025-10-07 22:13:58,383 | INFO     | transferring file log.46376905._135385.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6835263737/log.46376905._135385.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-07 17:14:53] 2025-10-07 22:13:58,383 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6835263737/log.46376905._135385.job.log.tgz.1 /var/lib/boinc/slots/1/log.46376905._135385.job
[2025-10-07 17:14:53] 2025-10-07 22:13:58,391 | INFO     | adding to output.list: log.46376905._135385.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/8c/log.46376905._135385.job.log.tg
[2025-10-07 17:14:53] 2025-10-07 22:13:58,391 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 17:14:53] 2025-10-07 22:13:58,391 | INFO     | summary of transferred files:
[2025-10-07 17:14:53] 2025-10-07 22:13:58,391 | INFO     |  -- lfn=log.46376905._135385.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 17:14:53] 2025-10-07 22:13:58,391 | INFO     | stage-out finished correctly
[2025-10-07 17:14:53] 2025-10-07 22:13:58,826 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 17:14:53] 2025-10-07 22:13:59,614 | INFO     | monitor loop #124: job 0:6835263737 is in state 'finished'
[2025-10-07 17:14:53] 2025-10-07 22:13:59,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 17:14:53] 2025-10-07 22:14:00,290 | INFO     | time since job start (1575s) is within the limit (172800.0s)
[2025-10-07 17:14:53] 2025-10-07 22:14:01,646 | INFO     | job 6835263737 has state=finished
[2025-10-07 17:14:53] 2025-10-07 22:14:01,646 | INFO     | preparing for final server update for job 6835263737 in state='finished'
[2025-10-07 17:14:53] 2025-10-07 22:14:01,646 | INFO     | this job has now completed (state=finished)
[2025-10-07 17:14:53] 2025-10-07 22:14:01,646 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 17:14:53] 2025-10-07 22:14:01,646 | INFO     | log transfer has been attempted: DONE
[2025-10-07 17:14:53] 2025-10-07 22:14:01,646 | INFO     | job 6835263737 has finished - writing final server update
[2025-10-07 17:14:53] 2025-10-07 22:14:01,646 | INFO     | total number of processed events: 400 (read)
[2025-10-07 17:14:53] 2025-10-07 22:14:01,647 | INFO     | executing command: lscpu
[2025-10-07 17:14:53] 2025-10-07 22:14:01,665 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 17:14:53] 2025-10-07 22:14:02,117 | INFO     | monitor loop #125: job 0:6835263737 is in state 'finished'
[2025-10-07 17:14:53] 2025-10-07 22:14:02,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 17:14:53] 2025-10-07 22:14:02,296 | INFO     | time since job start (1577s) is within the limit (172800.0s)
[2025-10-07 17:14:53] 2025-10-07 22:14:04,301 | INFO     | time since job start (1579s) is within the limit (172800.0s)
[2025-10-07 17:14:53] 2025-10-07 22:14:04,620 | INFO     | monitor loop #126: job 0:6835263737 is in state 'finished'
[2025-10-07 17:14:53] 2025-10-07 22:14:04,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 17:14:53] 2025-10-07 22:14:05,464 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 17:14:53] 2025-10-07 22:14:05,467 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4269.068343750001
[2025-10-07 17:14:53] 2025-10-07 22:14:05,470 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6835263737/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 17:14:53] 2025-10-07 22:14:05,471 | INFO     | extracted standard info from prmon json
[2025-10-07 17:14:53] 2025-10-07 22:14:05,471 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 17:14:53] 2025-10-07 22:14:05,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 17:14:53] 2025-10-07 22:14:05,471 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 17:14:53] 2025-10-07 22:14:05,471 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | fitting pss+swap vs Time
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | sum of square deviations: 2120970.0
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | sum of deviations: -426033211.00000006
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | mean x: 1759874537.0
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | mean y: 2926919.210526316
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | -- intersect: 353503919368.5372
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | intersect: 353503919368.5372
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | chi2: 0.03739101264620181
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | -- intersect: 353503919368.5372
[2025-10-07 17:14:53] 2025-10-07 22:14:05,472 | INFO     | current memory leak: -200.87 B/s (using 19 data points, chi2=0.04)
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | could have reported an average CPU frequency of 4209 MHz (4 samples)
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | ..............................
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . Timing measurements:
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . get job = 0 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . initial setup = 2 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . payload setup = 2 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . stage-in = 0 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . payload execution = 1554 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . stage-out = 0 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | . log creation = 0 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,473 | INFO     | ..............................
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | 
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | job summary report
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | --------------------------------------------------
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | PanDA job id: 6835263737
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | task id: 46376905
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | errors: (none)
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | pilot state: finished 
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | transexitcode: 0
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | exeerrorcode: 0
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | exeerrordiag: 
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | exitcode: 0
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | exitmsg: OK
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | cpuconsumptiontime: 16894 s
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | nevents: 400
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | neventsw: 0
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | pid: 2248786
[2025-10-07 17:14:53] 2025-10-07 22:14:05,748 | INFO     | pgrp: 2248786
[2025-10-07 17:14:53] 2025-10-07 22:14:05,749 | INFO     | corecount: 12
[2025-10-07 17:14:53] 2025-10-07 22:14:05,749 | INFO     | event service: False
[2025-10-07 17:14:53] 2025-10-07 22:14:05,749 | INFO     | sizes: {0: 2348652, 1: 2348766, 2: 2349056, 11: 2349084, 1559: 2373895, 1560: 2383076, 1561: 2383076, 1567: 2383270}
[2025-10-07 17:14:53] 2025-10-07 22:14:05,749 | INFO     | --------------------------------------------------
[2025-10-07 17:14:53] 2025-10-07 22:14:05,749 | INFO     | 
[2025-10-07 17:14:53] 2025-10-07 22:14:05,749 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-07 17:14:53] 2025-10-07 22:14:05,760 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | job 6835263737 has completed (purged errors)
[2025-10-07 17:14:53] 2025-10-07 22:14:05,761 | INFO     | overall cleanup function is called
[2025-10-07 17:14:53] 2025-10-07 22:14:06,768 | INFO     | --- collectZombieJob: --- 10, [2248786]
[2025-10-07 17:14:53] 2025-10-07 22:14:06,768 | INFO     | zombie collector waiting for pid 2248786
[2025-10-07 17:14:53] 2025-10-07 22:14:06,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 17:14:53] 2025-10-07 22:14:06,769 | INFO     | collected zombie processes
[2025-10-07 17:14:53] 2025-10-07 22:14:06,769 | INFO     | will attempt to kill all subprocesses of pid=2248786
[2025-10-07 17:14:53] 2025-10-07 22:14:06,846 | INFO     | process IDs to be killed: [2248786] (in reverse order)
[2025-10-07 17:14:53] 2025-10-07 22:14:06,880 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 17:14:53] 2025-10-07 22:14:06,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 17:14:53] 2025-10-07 22:14:06,883 | INFO     | did not find any defunct processes belonging to 2248786
[2025-10-07 17:14:53] 2025-10-07 22:14:06,886 | INFO     | did not find any defunct processes belonging to 2248786
[2025-10-07 17:14:53] 2025-10-07 22:14:06,886 | INFO     | ready for new job
[2025-10-07 17:14:53] 2025-10-07 22:14:06,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 17:14:53] 2025-10-07 22:14:06,888 | INFO     | ***************************************
[2025-10-07 17:14:53] 2025-10-07 22:14:06,888 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 17:14:53] 2025-10-07 22:14:06,888 | INFO     | ***************************************
[2025-10-07 17:14:53] 2025-10-07 22:14:06,888 | INFO     | 
[2025-10-07 17:14:53] 2025-10-07 22:14:06,889 | INFO     | architecture information:
[2025-10-07 17:14:53] 2025-10-07 22:14:06,889 | INFO     | executing command: cat /etc/os-release
[2025-10-07 17:14:53] 2025-10-07 22:14:06,898 | INFO     | cat /etc/os-release:
[2025-10-07 17:14:53] NAME="CentOS Linux"
[2025-10-07 17:14:53] VERSION="7 (Core)"
[2025-10-07 17:14:53] ID="centos"
[2025-10-07 17:14:53] ID_LIKE="rhel fedora"
[2025-10-07 17:14:53] VERSION_ID="7"
[2025-10-07 17:14:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 17:14:53] ANSI_COLOR="0;31"
[2025-10-07 17:14:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 17:14:53] HOME_URL="https://www.centos.org/"
[2025-10-07 17:14:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 17:14:53] 
[2025-10-07 17:14:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 17:14:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 17:14:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 17:14:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 17:14:53] 
[2025-10-07 17:14:53] 2025-10-07 22:14:06,899 | INFO     | ***************************************
[2025-10-07 17:14:53] 2025-10-07 22:14:07,401 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-07 17:14:53] 2025-10-07 22:14:07,411 | INFO     | sufficient remaining disk space (3851608391680 B)
[2025-10-07 17:14:53] 2025-10-07 22:14:07,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 17:14:53] 2025-10-07 22:14:07,412 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 17:14:53] 2025-10-07 22:14:07,412 | INFO     | update_server=False
[2025-10-07 17:14:53] 2025-10-07 22:14:07,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 17:14:53] 2025-10-07 22:14:07,412 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 17:14:53] 2025-10-07 22:14:07,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 17:14:53] 2025-10-07 22:14:08,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 17:14:53] 2025-10-07 22:14:08,129 | INFO     | aborting loop
[2025-10-07 17:14:53] 2025-10-07 22:14:08,175 | INFO     | all data control threads have been joined
[2025-10-07 17:14:53] 2025-10-07 22:14:08,375 | INFO     | all job control threads have been joined
[2025-10-07 17:14:53] 2025-10-07 22:14:08,417 | INFO     | [job] retrieve thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:08,417 | INFO     | [job] queue monitor thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:08,468 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:08,473 | INFO     | all payload control threads have been joined
[2025-10-07 17:14:53] 2025-10-07 22:14:08,644 | INFO     | [payload] validate_post thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:08,740 | INFO     | [data] copytool_in thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,082 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,134 | INFO     | [job] job monitor thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,180 | INFO     | [data] control thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,380 | INFO     | [job] control thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 17:14:53] 2025-10-07 22:14:09,417 | INFO     | [data] copytool_out thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,478 | INFO     | [payload] control thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,703 | INFO     | [payload] failed_post thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,780 | INFO     | [job] validate thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,850 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:09,897 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:13,392 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 17:14:53] 2025-10-07 22:14:37,453 | INFO     | PID=2241925 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 17:14:53] 2025-10-07 22:14:37,453 | INFO     | .. there are 2 such processes running
[2025-10-07 17:14:53] 2025-10-07 22:14:37,453 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 17:14:53] 2025-10-07 22:14:37,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 17:14:53] 2025-10-07 22:14:37,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 17:14:53] 2025-10-07 22:14:47,548 | INFO     | [monitor] cgroup control has ended
[2025-10-07 17:14:53] 2025-10-07 22:14:47,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140463640176448)>', '<ExcThread(monitor, started 140462971135744)>']
[2025-10-07 17:14:53] 2025-10-07 22:14:48,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 17:14:53] 2025-10-07 22:14:48,508 | INFO     | [monitor] control thread has ended
[2025-10-07 17:14:53] 2025-10-07 22:14:52,974 | INFO     | all workflow threads have been joined
[2025-10-07 17:14:53] 2025-10-07 22:14:52,974 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 17:14:53] 2025-10-07 22:14:52,974 | INFO     | traces error code: 0
[2025-10-07 17:14:53] 2025-10-07 22:14:52,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 17:14:53] 2025-10-07 22:14:53,061 [wrapper] ==== pilot stdout END ====
[2025-10-07 17:14:53] 2025-10-07 22:14:53,063 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 17:14:53] 2025-10-07 22:14:53,064 [wrapper] pilotpid: 2241925
[2025-10-07 17:14:53] 2025-10-07 22:14:53,066 [wrapper] Pilot exit status: 0
[2025-10-07 17:14:53] 2025-10-07 22:14:53,071 [wrapper] pandaids: 6835263737
[2025-10-07 17:14:53] 2025-10-07 22:14:53,094 [wrapper] cleanup supervisor_pilot 2266592 2241926
[2025-10-07 17:14:53] 2025-10-07 22:14:53,096 [wrapper] Test setup, not cleaning
[2025-10-07 17:14:53] 2025-10-07 22:14:53,098 [wrapper] apfmon messages muted
[2025-10-07 17:14:53] 2025-10-07 22:14:53,099 [wrapper] ==== wrapper stdout END ====
[2025-10-07 17:14:53] 2025-10-07 22:14:53,101 [wrapper] ==== wrapper stderr END ====
[2025-10-07 17:14:53]  *** Error codes and diagnostics ***
[2025-10-07 17:14:53]     "exeErrorCode": 0,
[2025-10-07 17:14:53]     "exeErrorDiag": "",
[2025-10-07 17:14:53]     "pilotErrorCode": 0,
[2025-10-07 17:14:53]     "pilotErrorDiag": "",
[2025-10-07 17:14:53]  *** Listing of results directory ***
[2025-10-07 17:14:53] total 394740
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc      5112 Oct  7 15:16 queuedata.json
[2025-10-07 17:14:53] -rwx------. 1 boinc boinc     36292 Oct  7 15:17 runpilot2-wrapper.sh
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc    552446 Oct  7 15:17 pilot3.tar.gz
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc       100 Oct  7 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 17:14:53] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 16:47 run_atlas
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc       105 Oct  7 16:47 job.xml
[2025-10-07 17:14:53] -rw-r--r--. 2 boinc boinc 214666651 Oct  7 16:47 EVNT.46376901._003766.pool.root.1
[2025-10-07 17:14:53] -rw-r--r--. 2 boinc boinc     15120 Oct  7 16:47 start_atlas.sh
[2025-10-07 17:14:53] drwxrwx--x. 1 boinc boinc        76 Oct  7 16:47 shared
[2025-10-07 17:14:53] -rw-r--r--. 2 boinc boinc    565600 Oct  7 16:47 input.tar.gz
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc     10054 Oct  7 16:47 init_data.xml
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc         0 Oct  7 16:47 boinc_setup_complete
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc         0 Oct  7 16:47 boinc_lockfile
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc      2519 Oct  7 16:47 pandaJob.out
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc    979849 Oct  7 16:47 agis_schedconf.cvmfs.json
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc   1560401 Oct  7 16:47 agis_ddmendpoints.agis.ALL.json
[2025-10-07 17:14:53] drwx------. 1 boinc boinc       368 Oct  7 16:47 pilot3
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc 184435871 Oct  7 17:13 HITS.46376905._135385.pool.root.1
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc       529 Oct  7 17:13 boinc_task_state.xml
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc        95 Oct  7 17:13 pilot_heartbeat.json
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc      1028 Oct  7 17:13 memory_monitor_summary.json
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc    346128 Oct  7 17:13 log.46376905._135385.job.log.tgz.1
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc      7793 Oct  7 17:14 heartbeat.json
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc      8192 Oct  7 17:14 boinc_mmap_file
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc        27 Oct  7 17:14 wrapper_checkpoint.txt
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc      4825 Oct  7 17:14 pilotlog.txt
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc    270840 Oct  7 17:14 log.46376905._135385.job.log.1
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc       357 Oct  7 17:14 output.list
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc       620 Oct  7 17:14 runtime_log
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc    634880 Oct  7 17:14 result.tar.gz
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc      8727 Oct  7 17:14 runtime_log.err
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc       652 Oct  7 17:14 36iLDmRITQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKFXNDmtYJYYo.diag
[2025-10-07 17:14:53] -rw-r--r--. 1 boinc boinc     21590 Oct  7 17:14 stderr.txt
[2025-10-07 17:14:53] HITS file was successfully produced:
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc 184435871 Oct  7 17:13 shared/HITS.pool.root.1
[2025-10-07 17:14:53]  *** Contents of shared directory: ***
[2025-10-07 17:14:53] total 390944
[2025-10-07 17:14:53] -rw-r--r--. 2 boinc boinc 214666651 Oct  7 16:47 ATLAS.root_0
[2025-10-07 17:14:53] -rw-r--r--. 2 boinc boinc     15120 Oct  7 16:47 start_atlas.sh
[2025-10-07 17:14:53] -rw-r--r--. 2 boinc boinc    565600 Oct  7 16:47 input.tar.gz
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc 184435871 Oct  7 17:13 HITS.pool.root.1
[2025-10-07 17:14:53] -rw-------. 1 boinc boinc    634880 Oct  7 17:14 result.tar.gz
17:14:55 (2238026): run_atlas exited; CPU time 16895.068113
17:14:55 (2238026): called boinc_finish(0)

</stderr_txt>
]]>

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