Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
14:26:38 (3873703): wrapper (7.7.26015): starting
14:26:38 (3873703): wrapper: running run_atlas (--nthreads 4)
[2025-10-07 14:26:38] Arguments: --nthreads 4
[2025-10-07 14:26:38] Threads: 4
[2025-10-07 14:26:38] Checking for CVMFS
[2025-10-07 14:26:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 14:26:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 14:26:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 14:26:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 14:26:38] 2.11.3.0 1973660 6746 73252 151446 0 57 3800533 4096001 4585 130560 0 27733878 99.998 223650 567 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-07 14:26:38] CVMFS is ok
[2025-10-07 14:26:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 14:26:38] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-07 14:26:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-07 14:26:38] Further information can be found at the LHC@home message board.
[2025-10-07 14:26:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 14:26:38] Checking for apptainer binary...
[2025-10-07 14:26:38] apptainer is not installed, using version from CVMFS
[2025-10-07 14:26:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 14:26:39] officedc-System-Product-Name
[2025-10-07 14:26:39] apptainer works
[2025-10-07 14:26:39] Set ATHENA_PROC_NUMBER=4
[2025-10-07 14:26:39] Set ATHENA_CORE_NUMBER=4
[2025-10-07 14:26:39] Starting ATLAS job with PandaID=6834529237
[2025-10-07 14:26:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc3/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 16:03:04]  *** The last 200 lines of the pilot log: ***
[2025-10-07 16:03:04]  mtime=0
[2025-10-07 16:03:04]  protocol_id=None
[2025-10-07 16:03:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 16:03:04]  replicas=None
[2025-10-07 16:03:04]  scope=mc23_13p6TeV
[2025-10-07 16:03:04]  status=None
[2025-10-07 16:03:04]  status_code=0
[2025-10-07 16:03:04]  storage_token=
[2025-10-07 16:03:04]  surl=/var/lib/boinc3/slots/0/PanDA_Pilot-6834529237/log.46376905._134481.job.log.tgz.1
[2025-10-07 16:03:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/a2/log.46376905._134481.job.log.tgz.1
[2025-10-07 16:03:04]  workdir=None
[2025-10-07 16:03:04] ]
[2025-10-07 16:03:04] 2025-10-07 22:02:19,671 | INFO     | transferring file log.46376905._134481.job.log.tgz.1 from /var/lib/boinc3/slots/0/PanDA_Pilot-6834529237/log.46376905._134481.job.log.tgz.1 to /var/lib/boinc3/slot
[2025-10-07 16:03:04] 2025-10-07 22:02:19,671 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc3/slots/0/PanDA_Pilot-6834529237/log.46376905._134481.job.log.tgz.1 /var/lib/boinc3/slots/0/log.46376905._134481.j
[2025-10-07 16:03:04] 2025-10-07 22:02:19,689 | INFO     | adding to output.list: log.46376905._134481.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/a2/log.46376905._134481.job.log.tg
[2025-10-07 16:03:04] 2025-10-07 22:02:19,690 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 16:03:04] 2025-10-07 22:02:19,690 | INFO     | summary of transferred files:
[2025-10-07 16:03:04] 2025-10-07 22:02:19,690 | INFO     |  -- lfn=log.46376905._134481.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 16:03:04] 2025-10-07 22:02:19,690 | INFO     | stage-out finished correctly
[2025-10-07 16:03:04] 2025-10-07 22:02:19,961 | INFO     | time since job start (5730s) is within the limit (172800.0s)
[2025-10-07 16:03:04] 2025-10-07 22:02:20,232 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 16:03:04] 2025-10-07 22:02:20,407 | INFO     | job 6834529237 has state=finished
[2025-10-07 16:03:04] 2025-10-07 22:02:20,408 | INFO     | preparing for final server update for job 6834529237 in state='finished'
[2025-10-07 16:03:04] 2025-10-07 22:02:20,408 | INFO     | this job has now completed (state=finished)
[2025-10-07 16:03:04] 2025-10-07 22:02:20,408 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 16:03:04] 2025-10-07 22:02:20,408 | INFO     | log transfer has been attempted: DONE
[2025-10-07 16:03:04] 2025-10-07 22:02:20,408 | INFO     | job 6834529237 has finished - writing final server update
[2025-10-07 16:03:04] 2025-10-07 22:02:20,409 | INFO     | total number of processed events: 400 (read)
[2025-10-07 16:03:04] 2025-10-07 22:02:20,409 | INFO     | executing command: lscpu
[2025-10-07 16:03:04] 2025-10-07 22:02:20,438 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 16:03:04] 2025-10-07 22:02:21,204 | INFO     | monitor loop #429: job 0:6834529237 is in state 'finished'
[2025-10-07 16:03:04] 2025-10-07 22:02:21,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 16:03:04] 2025-10-07 22:02:21,967 | INFO     | time since job start (5732s) is within the limit (172800.0s)
[2025-10-07 16:03:04] 2025-10-07 22:02:23,710 | INFO     | monitor loop #430: job 0:6834529237 is in state 'finished'
[2025-10-07 16:03:04] 2025-10-07 22:02:23,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 16:03:04] 2025-10-07 22:02:23,973 | INFO     | time since job start (5734s) is within the limit (172800.0s)
[2025-10-07 16:03:04] 2025-10-07 22:02:24,370 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 16:03:04] 2025-10-07 22:02:24,374 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.967687499999
[2025-10-07 16:03:04] 2025-10-07 22:02:24,378 | INFO     | using path: /var/lib/boinc3/slots/0/PanDA_Pilot-6834529237/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 16:03:04] 2025-10-07 22:02:24,379 | INFO     | extracted standard info from prmon json
[2025-10-07 16:03:04] 2025-10-07 22:02:24,379 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 16:03:04] 2025-10-07 22:02:24,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 16:03:04] 2025-10-07 22:02:24,379 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 16:03:04] 2025-10-07 22:02:24,379 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 16:03:04] 2025-10-07 22:02:24,381 | INFO     | fitting pss+swap vs Time
[2025-10-07 16:03:04] 2025-10-07 22:02:24,381 | INFO     | sum of square deviations: 204163828.0
[2025-10-07 16:03:04] 2025-10-07 22:02:24,381 | INFO     | sum of deviations: -16298480383.000002
[2025-10-07 16:03:04] 2025-10-07 22:02:24,381 | INFO     | mean x: 1759871759.0
[2025-10-07 16:03:04] 2025-10-07 22:02:24,381 | INFO     | mean y: 2420393.528735632
[2025-10-07 16:03:04] 2025-10-07 22:02:24,381 | INFO     | -- intersect: 140493689692.50174
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | intersect: 140493689692.50174
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | chi2: 0.10020150523221487
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | -- intersect: 140493689692.50174
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | current memory leak: -79.83 B/s (using 87 data points, chi2=0.10)
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | could have reported an average CPU frequency of 3959 MHz (7 samples)
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | ..............................
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | . Timing measurements:
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | . get job = 0 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | . initial setup = 3 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | . payload setup = 4 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,382 | INFO     | . stage-in = 0 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,383 | INFO     | . payload execution = 5707 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,383 | INFO     | . stage-out = 0 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,383 | INFO     | . log creation = 0 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,383 | INFO     | ..............................
[2025-10-07 16:03:04] 2025-10-07 22:02:24,691 | INFO     | 
[2025-10-07 16:03:04] 2025-10-07 22:02:24,691 | INFO     | job summary report
[2025-10-07 16:03:04] 2025-10-07 22:02:24,691 | INFO     | --------------------------------------------------
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | PanDA job id: 6834529237
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | task id: 46376905
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | errors: (none)
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | pilot state: finished 
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | transexitcode: 0
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | exeerrorcode: 0
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | exeerrordiag: 
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | exitcode: 0
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | exitmsg: OK
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | cpuconsumptiontime: 21589 s
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | nevents: 400
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | neventsw: 0
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | pid: 3884241
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | pgrp: 3884241
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | corecount: 4
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | event service: False
[2025-10-07 16:03:04] 2025-10-07 22:02:24,692 | INFO     | sizes: {0: 2348770, 1: 2348770, 4: 2349060, 11: 2349088, 5716: 2384883, 5717: 2384883, 5721: 2385205}
[2025-10-07 16:03:04] 2025-10-07 22:02:24,693 | INFO     | --------------------------------------------------
[2025-10-07 16:03:04] 2025-10-07 22:02:24,693 | INFO     | 
[2025-10-07 16:03:04] 2025-10-07 22:02:24,693 | INFO     | executing command: ls -lF /var/lib/boinc3/slots/0
[2025-10-07 16:03:04] 2025-10-07 22:02:24,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | job 6834529237 has completed (purged errors)
[2025-10-07 16:03:04] 2025-10-07 22:02:24,718 | INFO     | overall cleanup function is called
[2025-10-07 16:03:04] 2025-10-07 22:02:25,726 | INFO     | --- collectZombieJob: --- 10, [3884241]
[2025-10-07 16:03:04] 2025-10-07 22:02:25,727 | INFO     | zombie collector waiting for pid 3884241
[2025-10-07 16:03:04] 2025-10-07 22:02:25,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 16:03:04] 2025-10-07 22:02:25,727 | INFO     | collected zombie processes
[2025-10-07 16:03:04] 2025-10-07 22:02:25,727 | INFO     | will attempt to kill all subprocesses of pid=3884241
[2025-10-07 16:03:04] 2025-10-07 22:02:25,871 | INFO     | process IDs to be killed: [3884241] (in reverse order)
[2025-10-07 16:03:04] 2025-10-07 22:02:25,943 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 16:03:04] 2025-10-07 22:02:25,943 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 16:03:04] 2025-10-07 22:02:25,948 | INFO     | did not find any defunct processes belonging to 3884241
[2025-10-07 16:03:04] 2025-10-07 22:02:25,952 | INFO     | did not find any defunct processes belonging to 3884241
[2025-10-07 16:03:04] 2025-10-07 22:02:25,952 | INFO     | ready for new job
[2025-10-07 16:03:04] 2025-10-07 22:02:25,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 16:03:04] 2025-10-07 22:02:25,953 | INFO     | ***************************************
[2025-10-07 16:03:04] 2025-10-07 22:02:25,954 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 16:03:04] 2025-10-07 22:02:25,954 | INFO     | ***************************************
[2025-10-07 16:03:04] 2025-10-07 22:02:25,954 | INFO     | 
[2025-10-07 16:03:04] 2025-10-07 22:02:25,955 | INFO     | architecture information:
[2025-10-07 16:03:04] 2025-10-07 22:02:25,955 | INFO     | executing command: cat /etc/os-release
[2025-10-07 16:03:04] 2025-10-07 22:02:25,969 | INFO     | cat /etc/os-release:
[2025-10-07 16:03:04] NAME="CentOS Linux"
[2025-10-07 16:03:04] VERSION="7 (Core)"
[2025-10-07 16:03:04] ID="centos"
[2025-10-07 16:03:04] ID_LIKE="rhel fedora"
[2025-10-07 16:03:04] VERSION_ID="7"
[2025-10-07 16:03:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 16:03:04] ANSI_COLOR="0;31"
[2025-10-07 16:03:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 16:03:04] HOME_URL="https://www.centos.org/"
[2025-10-07 16:03:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 16:03:04] 
[2025-10-07 16:03:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 16:03:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 16:03:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 16:03:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 16:03:04] 
[2025-10-07 16:03:04] 2025-10-07 22:02:25,969 | INFO     | ***************************************
[2025-10-07 16:03:04] 2025-10-07 22:02:26,472 | INFO     | executing command: df -mP /var/lib/boinc3/slots/0
[2025-10-07 16:03:04] 2025-10-07 22:02:26,483 | INFO     | sufficient remaining disk space (372827488256 B)
[2025-10-07 16:03:04] 2025-10-07 22:02:26,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 16:03:04] 2025-10-07 22:02:26,483 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 16:03:04] 2025-10-07 22:02:26,483 | INFO     | update_server=False
[2025-10-07 16:03:04] 2025-10-07 22:02:26,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 16:03:04] 2025-10-07 22:02:26,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 16:03:04] 2025-10-07 22:02:26,925 | INFO     | all data control threads have been joined
[2025-10-07 16:03:04] 2025-10-07 22:02:27,122 | INFO     | all job control threads have been joined
[2025-10-07 16:03:04] 2025-10-07 22:02:27,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 16:03:04] 2025-10-07 22:02:27,218 | INFO     | aborting loop
[2025-10-07 16:03:04] 2025-10-07 22:02:27,488 | INFO     | [job] retrieve thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:27,708 | INFO     | all payload control threads have been joined
[2025-10-07 16:03:04] 2025-10-07 22:02:27,773 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 16:03:04] 2025-10-07 22:02:27,836 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:27,920 | INFO     | [data] copytool_in thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:27,930 | INFO     | [data] control thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,051 | INFO     | [payload] validate_post thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,127 | INFO     | [job] control thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,223 | INFO     | [job] job monitor thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,492 | INFO     | [payload] failed_post thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,710 | INFO     | [payload] control thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,738 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,836 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,925 | INFO     | [job] validate thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:28,985 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:29,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 16:03:04] 2025-10-07 22:02:29,779 | INFO     | [data] copytool_out thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:30,471 | INFO     | [job] queue monitor thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:30,489 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 16:03:04] 2025-10-07 22:02:57,217 | INFO     | PID=3877546 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 16:03:04] 2025-10-07 22:02:57,217 | INFO     | .. there are 7 such processes running
[2025-10-07 16:03:04] 2025-10-07 22:02:57,218 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 16:03:04] 2025-10-07 22:02:57,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 16:03:04] 2025-10-07 22:02:57,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 16:03:04] 2025-10-07 22:02:58,071 | INFO     | [monitor] cgroup control has ended
[2025-10-07 16:03:04] 2025-10-07 22:02:59,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128598472742720)>', '<ExcThread(monitor, started 128597897508608)>']
[2025-10-07 16:03:04] 2025-10-07 22:03:00,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 16:03:04] 2025-10-07 22:03:00,232 | INFO     | [monitor] control thread has ended
[2025-10-07 16:03:04] 2025-10-07 22:03:04,637 | INFO     | all workflow threads have been joined
[2025-10-07 16:03:04] 2025-10-07 22:03:04,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 16:03:04] 2025-10-07 22:03:04,637 | INFO     | traces error code: 0
[2025-10-07 16:03:04] 2025-10-07 22:03:04,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 16:03:04] 2025-10-07 22:03:04,786 [wrapper] ==== pilot stdout END ====
[2025-10-07 16:03:04] 2025-10-07 22:03:04,790 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 16:03:04] 2025-10-07 22:03:04,793 [wrapper] pilotpid: 3877546
[2025-10-07 16:03:04] 2025-10-07 22:03:04,796 [wrapper] Pilot exit status: 0
[2025-10-07 16:03:04] 2025-10-07 22:03:04,809 [wrapper] pandaids: 6834529237
[2025-10-07 16:03:04] 2025-10-07 22:03:04,860 [wrapper] cleanup supervisor_pilot 4022466 3877547
[2025-10-07 16:03:04] 2025-10-07 22:03:04,865 [wrapper] Test setup, not cleaning
[2025-10-07 16:03:04] 2025-10-07 22:03:04,867 [wrapper] apfmon messages muted
[2025-10-07 16:03:04] 2025-10-07 22:03:04,869 [wrapper] ==== wrapper stdout END ====
[2025-10-07 16:03:04] 2025-10-07 22:03:04,872 [wrapper] ==== wrapper stderr END ====
[2025-10-07 16:03:04]  *** Error codes and diagnostics ***
[2025-10-07 16:03:04]     "exeErrorCode": 0,
[2025-10-07 16:03:04]     "exeErrorDiag": "",
[2025-10-07 16:03:04]     "pilotErrorCode": 0,
[2025-10-07 16:03:04]     "pilotErrorDiag": "",
[2025-10-07 16:03:04]  *** Listing of results directory ***
[2025-10-07 16:03:04] total 396264
[2025-10-07 16:03:04] -rw-r--r-- 1 boinc boinc    552446 Oct  7 05:55 pilot3.tar.gz
[2025-10-07 16:03:04] -rw-r--r-- 1 boinc boinc      5112 Oct  7 06:31 queuedata.json
[2025-10-07 16:03:04] -rwx------ 1 boinc boinc     36292 Oct  7 06:32 runpilot2-wrapper.sh
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc       100 Oct  7 14:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 16:03:04] -rwxr-xr-x 1 boinc boinc      7986 Oct  7 14:26 run_atlas
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc       105 Oct  7 14:26 job.xml
[2025-10-07 16:03:04] -rw-r--r-- 2 boinc boinc 216093453 Oct  7 14:26 EVNT.46376901._004205.pool.root.1
[2025-10-07 16:03:04] -rw-r--r-- 2 boinc boinc     15120 Oct  7 14:26 start_atlas.sh
[2025-10-07 16:03:04] drwxrwx--x 2 boinc boinc      4096 Oct  7 14:26 shared
[2025-10-07 16:03:04] -rw-r--r-- 2 boinc boinc    565609 Oct  7 14:26 input.tar.gz
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc         0 Oct  7 14:26 boinc_lockfile
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc      2520 Oct  7 14:26 pandaJob.out
[2025-10-07 16:03:04] -rw------- 1 boinc boinc    979856 Oct  7 14:26 agis_schedconf.cvmfs.json
[2025-10-07 16:03:04] -rw------- 1 boinc boinc   1560401 Oct  7 14:26 agis_ddmendpoints.agis.ALL.json
[2025-10-07 16:03:04] drwx------ 4 boinc boinc      4096 Oct  7 14:26 pilot3
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc      9759 Oct  7 14:54 init_data.xml
[2025-10-07 16:03:04] -rw------- 1 boinc boinc 183527380 Oct  7 16:01 HITS.46376905._134481.pool.root.1
[2025-10-07 16:03:04] -rw------- 1 boinc boinc        95 Oct  7 16:02 pilot_heartbeat.json
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc       529 Oct  7 16:02 boinc_task_state.xml
[2025-10-07 16:03:04] -rw------- 1 boinc boinc      1025 Oct  7 16:02 memory_monitor_summary.json
[2025-10-07 16:03:04] -rw------- 1 boinc boinc    286330 Oct  7 16:02 log.46376905._134481.job.log.tgz.1
[2025-10-07 16:03:04] -rw------- 1 boinc boinc      7784 Oct  7 16:02 heartbeat.json
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc      8192 Oct  7 16:03 boinc_mmap_file
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc        27 Oct  7 16:03 wrapper_checkpoint.txt
[2025-10-07 16:03:04] -rw------- 1 boinc boinc      4825 Oct  7 16:03 pilotlog.txt
[2025-10-07 16:03:04] -rw------- 1 boinc boinc    839781 Oct  7 16:03 log.46376905._134481.job.log.1
[2025-10-07 16:03:04] -rw------- 1 boinc boinc       357 Oct  7 16:03 output.list
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc       620 Oct  7 16:03 runtime_log
[2025-10-07 16:03:04] -rw------- 1 boinc boinc   1146880 Oct  7 16:03 result.tar.gz
[2025-10-07 16:03:04] -rw------- 1 boinc boinc       658 Oct  7 16:03 tgJODmg2LQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmR5WNDmW7RpTo.diag
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc      8755 Oct  7 16:03 runtime_log.err
[2025-10-07 16:03:04] -rw-rw-r-- 1 boinc boinc     21794 Oct  7 16:03 stderr.txt
[2025-10-07 16:03:04] HITS file was successfully produced:
[2025-10-07 16:03:04] -rw------- 1 boinc boinc 183527380 Oct  7 16:01 shared/HITS.pool.root.1
[2025-10-07 16:03:04]  *** Contents of shared directory: ***
[2025-10-07 16:03:04] total 391960
[2025-10-07 16:03:04] -rw-r--r-- 2 boinc boinc 216093453 Oct  7 14:26 ATLAS.root_0
[2025-10-07 16:03:04] -rw-r--r-- 2 boinc boinc     15120 Oct  7 14:26 start_atlas.sh
[2025-10-07 16:03:04] -rw-r--r-- 2 boinc boinc    565609 Oct  7 14:26 input.tar.gz
[2025-10-07 16:03:04] -rw------- 1 boinc boinc 183527380 Oct  7 16:01 HITS.pool.root.1
[2025-10-07 16:03:04] -rw------- 1 boinc boinc   1146880 Oct  7 16:03 result.tar.gz
16:03:06 (3873703): run_atlas exited; CPU time 21633.725011
16:03:06 (3873703): called boinc_finish(0)

</stderr_txt>
]]>

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