Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:57:48 (3702900): wrapper (7.7.26015): starting
15:57:48 (3702900): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 15:57:48] Arguments: --nthreads 8
[2025-10-07 15:57:48] Threads: 8
[2025-10-07 15:57:48] Checking for CVMFS
[2025-10-07 15:57:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 15:57:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 15:57:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 15:57:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 15:57:50] 2.13.2.0 7534 70586 149848 151445 0 434 39901797 40960000 26577 16776704 0 424201751 99.769 248352741 44796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-07 15:57:50] CVMFS is ok
[2025-10-07 15:57:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 15:57:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 15:57:50] Further information can be found at the LHC@home message board.
[2025-10-07 15:57:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 15:57:50] Checking for apptainer binary...
[2025-10-07 15:57:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 15:57:50] Running /usr/bin/apptainer --version
[2025-10-07 15:57:50] apptainer version 1.4.2-1.el9
[2025-10-07 15:57:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 15:57:50] c-208-39.aglt2.org
[2025-10-07 15:57:50] apptainer works
[2025-10-07 15:57:50] Set ATHENA_PROC_NUMBER=8
[2025-10-07 15:57:50] Set ATHENA_CORE_NUMBER=8
[2025-10-07 15:57:50] Starting ATLAS job with PandaID=6834738393
[2025-10-07 15:57:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 17:30:10]  *** The last 200 lines of the pilot log: ***
[2025-10-07 17:30:10] ]
[2025-10-07 17:30:10] 2025-10-07 21:29:28,939 | INFO     | transferring file log.46376905._134759.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6834738393/log.46376905._134759.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-07 17:30:10] 2025-10-07 21:29:28,940 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6834738393/log.46376905._134759.job.log.tgz.1 /tmp/boinchome/slots/4/log.46376905._134759.job
[2025-10-07 17:30:10] 2025-10-07 21:29:28,958 | INFO     | adding to output.list: log.46376905._134759.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dc/56/log.46376905._134759.job.log.tg
[2025-10-07 17:30:10] 2025-10-07 21:29:28,959 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 17:30:10] 2025-10-07 21:29:28,959 | INFO     | summary of transferred files:
[2025-10-07 17:30:10] 2025-10-07 21:29:28,959 | INFO     |  -- lfn=log.46376905._134759.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 17:30:10] 2025-10-07 21:29:28,959 | INFO     | stage-out finished correctly
[2025-10-07 17:30:10] 2025-10-07 21:29:30,293 | INFO     | time since job start (5439s) is within the limit (172800.0s)
[2025-10-07 17:30:10] 2025-10-07 21:29:30,760 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 17:30:10] 2025-10-07 21:29:31,594 | WARNING  | process 3739078 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 17:30:10] 2025-10-07 21:29:31,595 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6834738393/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 17:30:10] 2025-10-07 21:29:31,898 | INFO     | number of running child processes to parent process 3739078: 1
[2025-10-07 17:30:10] 2025-10-07 21:29:31,898 | INFO     | maximum number of monitored processes: 6
[2025-10-07 17:30:10] 2025-10-07 21:29:32,298 | INFO     | time since job start (5441s) is within the limit (172800.0s)
[2025-10-07 17:30:10] 2025-10-07 21:29:32,951 | INFO     | job 6834738393 has state=finished
[2025-10-07 17:30:10] 2025-10-07 21:29:32,951 | INFO     | preparing for final server update for job 6834738393 in state='finished'
[2025-10-07 17:30:10] 2025-10-07 21:29:32,951 | INFO     | this job has now completed (state=finished)
[2025-10-07 17:30:10] 2025-10-07 21:29:32,952 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 17:30:10] 2025-10-07 21:29:32,952 | INFO     | log transfer has been attempted: DONE
[2025-10-07 17:30:10] 2025-10-07 21:29:32,952 | INFO     | job 6834738393 has finished - writing final server update
[2025-10-07 17:30:10] 2025-10-07 21:29:32,952 | INFO     | total number of processed events: 400 (read)
[2025-10-07 17:30:10] 2025-10-07 21:29:32,952 | INFO     | executing command: lscpu
[2025-10-07 17:30:10] 2025-10-07 21:29:33,005 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 17:30:10] 2025-10-07 21:29:34,304 | INFO     | time since job start (5443s) is within the limit (172800.0s)
[2025-10-07 17:30:10] 2025-10-07 21:29:34,401 | INFO     | monitor loop #364: job 0:6834738393 is in state 'finished'
[2025-10-07 17:30:10] 2025-10-07 21:29:34,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 17:30:10] 2025-10-07 21:29:36,310 | INFO     | time since job start (5445s) is within the limit (172800.0s)
[2025-10-07 17:30:10] 2025-10-07 21:29:36,907 | INFO     | monitor loop #365: job 0:6834738393 is in state 'finished'
[2025-10-07 17:30:10] 2025-10-07 21:29:36,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 17:30:10] 2025-10-07 21:29:36,909 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 17:30:10] 2025-10-07 21:29:36,914 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3788.374757812501
[2025-10-07 17:30:10] 2025-10-07 21:29:36,926 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6834738393/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 17:30:10] 2025-10-07 21:29:36,927 | INFO     | extracted standard info from prmon json
[2025-10-07 17:30:10] 2025-10-07 21:29:36,927 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 17:30:10] 2025-10-07 21:29:36,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 17:30:10] 2025-10-07 21:29:36,927 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 17:30:10] 2025-10-07 21:29:36,927 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 17:30:10] 2025-10-07 21:29:36,928 | INFO     | fitting pss+swap vs Time
[2025-10-07 17:30:10] 2025-10-07 21:29:36,928 | INFO     | sum of square deviations: 158739755.6875
[2025-10-07 17:30:10] 2025-10-07 21:29:36,928 | INFO     | sum of deviations: 2519262128.0625
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | mean x: 1759869979.5625
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | mean y: 2475178.6875
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | -- intersect: -27927351036.706223
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | intersect: -27927351036.706223
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | chi2: 0.023533868352562576
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | -- intersect: -27927351036.706223
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | current memory leak: 15.87 B/s (using 80 data points, chi2=0.02)
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | could have reported an average CPU frequency of 3777 MHz (6 samples)
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | ..............................
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . Timing measurements:
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . get job = 0 s
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . initial setup = 3 s
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . payload setup = 32 s
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . stage-in = 0 s
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . payload execution = 5337 s
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . stage-out = 0 s
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | . log creation = 0 s
[2025-10-07 17:30:10] 2025-10-07 21:29:36,929 | INFO     | ..............................
[2025-10-07 17:30:10] 2025-10-07 21:29:37,006 | INFO     | 
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | job summary report
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | --------------------------------------------------
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | PanDA job id: 6834738393
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | task id: 46376905
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | errors: (none)
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | pilot state: finished 
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | transexitcode: 0
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | exeerrorcode: 0
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | exeerrordiag: 
[2025-10-07 17:30:10] 2025-10-07 21:29:37,007 | INFO     | exitcode: 0
[2025-10-07 17:30:10] 2025-10-07 21:29:37,008 | INFO     | exitmsg: OK
[2025-10-07 17:30:10] 2025-10-07 21:29:37,008 | INFO     | cpuconsumptiontime: 19564 s
[2025-10-07 17:30:10] 2025-10-07 21:29:37,008 | INFO     | nevents: 400
[2025-10-07 17:30:10] 2025-10-07 21:29:37,008 | INFO     | neventsw: 0
[2025-10-07 17:30:10] 2025-10-07 21:29:37,008 | INFO     | pid: 3739078
[2025-10-07 17:30:10] 2025-10-07 21:29:37,008 | INFO     | pgrp: 3739078
[2025-10-07 17:30:10] 2025-10-07 21:29:37,008 | INFO     | corecount: 8
[2025-10-07 17:30:10] 2025-10-07 21:29:37,009 | INFO     | event service: False
[2025-10-07 17:30:10] 2025-10-07 21:29:37,009 | INFO     | sizes: {0: 2348589, 1: 2348844, 12: 2348844, 23: 2348872, 30: 2349162, 34: 2349190, 5373: 2375880, 5374: 2384878, 5376: 2384934, 5382: 2385128}
[2025-10-07 17:30:10] 2025-10-07 21:29:37,009 | INFO     | --------------------------------------------------
[2025-10-07 17:30:10] 2025-10-07 21:29:37,009 | INFO     | 
[2025-10-07 17:30:10] 2025-10-07 21:29:37,009 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-07 17:30:10] 2025-10-07 21:29:37,031 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,033 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,033 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 17:30:10] 2025-10-07 21:29:37,033 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,033 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 17:30:10] 2025-10-07 21:29:37,033 | INFO     | job 6834738393 has completed (purged errors)
[2025-10-07 17:30:10] 2025-10-07 21:29:37,033 | INFO     | overall cleanup function is called
[2025-10-07 17:30:10] 2025-10-07 21:29:37,687 | INFO     | PID=3715370 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-07 17:30:10] 2025-10-07 21:29:37,687 | INFO     | .. there are 22 such processes running
[2025-10-07 17:30:10] 2025-10-07 21:29:38,041 | INFO     | --- collectZombieJob: --- 10, [3739078]
[2025-10-07 17:30:10] 2025-10-07 21:29:38,041 | INFO     | zombie collector waiting for pid 3739078
[2025-10-07 17:30:10] 2025-10-07 21:29:38,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 17:30:10] 2025-10-07 21:29:38,041 | INFO     | collected zombie processes
[2025-10-07 17:30:10] 2025-10-07 21:29:38,041 | INFO     | will attempt to kill all subprocesses of pid=3739078
[2025-10-07 17:30:10] 2025-10-07 21:29:38,355 | INFO     | process IDs to be killed: [3739078] (in reverse order)
[2025-10-07 17:30:10] 2025-10-07 21:29:38,477 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 17:30:10] 2025-10-07 21:29:38,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 17:30:10] 2025-10-07 21:29:38,496 | INFO     | did not find any defunct processes belonging to 3739078
[2025-10-07 17:30:10] 2025-10-07 21:29:38,514 | INFO     | did not find any defunct processes belonging to 3739078
[2025-10-07 17:30:10] 2025-10-07 21:29:38,514 | INFO     | ready for new job
[2025-10-07 17:30:10] 2025-10-07 21:29:38,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 17:30:10] 2025-10-07 21:29:38,515 | INFO     | ***************************************
[2025-10-07 17:30:10] 2025-10-07 21:29:38,515 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 17:30:10] 2025-10-07 21:29:38,515 | INFO     | ***************************************
[2025-10-07 17:30:10] 2025-10-07 21:29:38,515 | INFO     | 
[2025-10-07 17:30:10] 2025-10-07 21:29:38,520 | INFO     | architecture information:
[2025-10-07 17:30:10] 2025-10-07 21:29:38,520 | INFO     | executing command: cat /etc/os-release
[2025-10-07 17:30:10] 2025-10-07 21:29:38,539 | INFO     | cat /etc/os-release:
[2025-10-07 17:30:10] NAME="CentOS Linux"
[2025-10-07 17:30:10] VERSION="7 (Core)"
[2025-10-07 17:30:10] ID="centos"
[2025-10-07 17:30:10] ID_LIKE="rhel fedora"
[2025-10-07 17:30:10] VERSION_ID="7"
[2025-10-07 17:30:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 17:30:10] ANSI_COLOR="0;31"
[2025-10-07 17:30:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 17:30:10] HOME_URL="https://www.centos.org/"
[2025-10-07 17:30:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 17:30:10] 
[2025-10-07 17:30:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 17:30:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 17:30:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 17:30:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 17:30:10] 
[2025-10-07 17:30:10] 2025-10-07 21:29:38,539 | INFO     | ***************************************
[2025-10-07 17:30:10] 2025-10-07 21:29:39,043 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-07 17:30:10] 2025-10-07 21:29:39,065 | INFO     | sufficient remaining disk space (171708514304 B)
[2025-10-07 17:30:10] 2025-10-07 21:29:39,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 17:30:10] 2025-10-07 21:29:39,065 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 17:30:10] 2025-10-07 21:29:39,065 | INFO     | update_server=False
[2025-10-07 17:30:10] 2025-10-07 21:29:39,065 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 17:30:10] 2025-10-07 21:29:39,118 | INFO     | all data control threads have been joined
[2025-10-07 17:30:10] 2025-10-07 21:29:39,410 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-07 17:30:10] 2025-10-07 21:29:39,410 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-07 17:30:10] 2025-10-07 21:29:39,411 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 17:30:10] 2025-10-07 21:29:39,411 | INFO     | will abort loop
[2025-10-07 17:30:10] 2025-10-07 21:29:39,530 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 17:30:10] 2025-10-07 21:29:40,070 | INFO     | [job] retrieve thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,094 | INFO     | [job] validate thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,124 | INFO     | [data] control thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,131 | INFO     | all job control threads have been joined
[2025-10-07 17:30:10] 2025-10-07 21:29:40,381 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,417 | INFO     | [job] job monitor thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,418 | INFO     | [payload] failed_post thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,508 | INFO     | all payload control threads have been joined
[2025-10-07 17:30:10] 2025-10-07 21:29:40,656 | INFO     | [payload] validate_post thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,817 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:40,835 | INFO     | [data] copytool_in thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:41,136 | INFO     | [job] control thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:41,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 17:30:10] 2025-10-07 21:29:41,384 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:41,514 | INFO     | [payload] control thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:41,536 | INFO     | [data] copytool_out thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:41,990 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 17:30:10] 2025-10-07 21:29:42,995 | INFO     | [job] queue monitor thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:45,328 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:50,085 | INFO     | job.realtimelogging is not enabled
[2025-10-07 17:30:10] 2025-10-07 21:29:51,091 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 17:30:10] 2025-10-07 21:29:59,411 | INFO     | [monitor] cgroup control has ended
[2025-10-07 17:30:10] 2025-10-07 21:30:00,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140062901249856)>', '<ExcThread(monitor, started 140061886633728)>']
[2025-10-07 17:30:10] 2025-10-07 21:30:05,637 | INFO     | all workflow threads have been joined
[2025-10-07 17:30:10] 2025-10-07 21:30:05,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 17:30:10] 2025-10-07 21:30:05,639 | INFO     | traces error code: 0
[2025-10-07 17:30:10] 2025-10-07 21:30:05,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 17:30:10] 2025-10-07 21:30:10,172 | INFO     | PID=3715370 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 17:30:10] 2025-10-07 21:30:10,174 | INFO     | .. there are 22 such processes running
[2025-10-07 17:30:10] 2025-10-07 21:30:10,174 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 17:30:10] 2025-10-07 21:30:10,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 17:30:10] 2025-10-07 21:30:10,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 17:30:10] 2025-10-07 21:30:10,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 17:30:10] 2025-10-07 21:30:10,174 | CRITICAL | thread 'MainThread' is not alive
[2025-10-07 17:30:10] 2025-10-07 21:30:10,174 | INFO     | [monitor] control thread has ended
[2025-10-07 17:30:10] 2025-10-07 21:30:10,263 [wrapper] ==== pilot stdout END ====
[2025-10-07 17:30:10] 2025-10-07 21:30:10,265 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 17:30:10] 2025-10-07 21:30:10,268 [wrapper] pilotpid: 3715370
[2025-10-07 17:30:10] 2025-10-07 21:30:10,270 [wrapper] Pilot exit status: 0
[2025-10-07 17:30:10] 2025-10-07 21:30:10,279 [wrapper] pandaids: 6834738393
[2025-10-07 17:30:10] 2025-10-07 21:30:10,365 [wrapper] cleanup supervisor_pilot 3941037 3715371
[2025-10-07 17:30:10] 2025-10-07 21:30:10,368 [wrapper] Test setup, not cleaning
[2025-10-07 17:30:10] 2025-10-07 21:30:10,371 [wrapper] apfmon messages muted
[2025-10-07 17:30:10] 2025-10-07 21:30:10,374 [wrapper] ==== wrapper stdout END ====
[2025-10-07 17:30:10] 2025-10-07 21:30:10,376 [wrapper] ==== wrapper stderr END ====
[2025-10-07 17:30:10]  *** Error codes and diagnostics ***
[2025-10-07 17:30:10]     "exeErrorCode": 0,
[2025-10-07 17:30:10]     "exeErrorDiag": "",
[2025-10-07 17:30:10]     "pilotErrorCode": 0,
[2025-10-07 17:30:10]     "pilotErrorDiag": "",
[2025-10-07 17:30:10]  *** Listing of results directory ***
[2025-10-07 17:30:10] total 382160
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas      5112 Oct  7 08:50 queuedata.json
[2025-10-07 17:30:10] -rwx------. 1 boincer umatlas     36292 Oct  7 08:52 runpilot2-wrapper.sh
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas    552446 Oct  7 08:52 pilot3.tar.gz
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas       100 Oct  7 15:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 17:30:10] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 15:57 run_atlas
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas       105 Oct  7 15:57 job.xml
[2025-10-07 17:30:10] -rw-r--r--. 2 boincer umatlas 213478251 Oct  7 15:57 EVNT.46376901._002646.pool.root.1
[2025-10-07 17:30:10] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 15:57 start_atlas.sh
[2025-10-07 17:30:10] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 15:57 shared
[2025-10-07 17:30:10] -rw-r--r--. 2 boincer umatlas    565595 Oct  7 15:57 input.tar.gz
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas         0 Oct  7 15:57 boinc_lockfile
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas      2519 Oct  7 15:57 pandaJob.out
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas    979864 Oct  7 15:58 agis_schedconf.cvmfs.json
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas   1560401 Oct  7 15:58 agis_ddmendpoints.agis.ALL.json
[2025-10-07 17:30:10] drwx------. 4 boincer umatlas      4096 Oct  7 15:58 pilot3
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas 171818146 Oct  7 17:29 HITS.46376905._134759.pool.root.1
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas       530 Oct  7 17:29 boinc_task_state.xml
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas        95 Oct  7 17:29 pilot_heartbeat.json
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas      1030 Oct  7 17:29 memory_monitor_summary.json
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas    337327 Oct  7 17:29 log.46376905._134759.job.log.tgz.1
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas      7777 Oct  7 17:29 heartbeat.json
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas      7172 Oct  7 17:29 init_data.xml
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 17:30 boinc_mmap_file
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas        27 Oct  7 17:30 wrapper_checkpoint.txt
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas       893 Oct  7 17:30 pilotlog.txt
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas    736716 Oct  7 17:30 log.46376905._134759.job.log.1
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas       357 Oct  7 17:30 output.list
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas       620 Oct  7 17:30 runtime_log
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas   1095680 Oct  7 17:30 result.tar.gz
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas      8703 Oct  7 17:30 runtime_log.err
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas       652 Oct  7 17:30 6fbNDmZMMQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmO8WNDmmjCFUn.diag
[2025-10-07 17:30:10] -rw-r--r--. 1 boincer umatlas     22427 Oct  7 17:30 stderr.txt
[2025-10-07 17:30:10] HITS file was successfully produced:
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas 171818146 Oct  7 17:29 shared/HITS.pool.root.1
[2025-10-07 17:30:10]  *** Contents of shared directory: ***
[2025-10-07 17:30:10] total 377916
[2025-10-07 17:30:10] -rw-r--r--. 2 boincer umatlas 213478251 Oct  7 15:57 ATLAS.root_0
[2025-10-07 17:30:10] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 15:57 start_atlas.sh
[2025-10-07 17:30:10] -rw-r--r--. 2 boincer umatlas    565595 Oct  7 15:57 input.tar.gz
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas 171818146 Oct  7 17:29 HITS.pool.root.1
[2025-10-07 17:30:10] -rw-------. 1 boincer umatlas   1095680 Oct  7 17:30 result.tar.gz
17:30:12 (3702900): run_atlas exited; CPU time 19682.629822
17:30:12 (3702900): called boinc_finish(0)

</stderr_txt>
]]>

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