Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:53:46 (420538): wrapper (7.7.26015): starting
14:53:46 (420538): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 14:53:46] Arguments: --nthreads 8
[2025-10-07 14:53:46] Threads: 8
[2025-10-07 14:53:46] Checking for CVMFS
[2025-10-07 14:53:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 14:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 14:53:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 14:53:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 14:53:49] 2.13.2.0 3405823 1262 173592 151444 3 658 17569213 32503471 32044 16776704 0 15443554 99.768 10163800 32341 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-07 14:53:49] CVMFS is ok
[2025-10-07 14:53:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 14:53:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 14:53:49] Further information can be found at the LHC@home message board.
[2025-10-07 14:53:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 14:53:49] Checking for apptainer binary...
[2025-10-07 14:53:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 14:53:49] Running /usr/bin/apptainer --version
[2025-10-07 14:53:49] apptainer version 1.4.2-1.el9
[2025-10-07 14:53:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 14:53:50] c8-7-2.aglt2.org
[2025-10-07 14:53:50] apptainer works
[2025-10-07 14:53:50] Set ATHENA_PROC_NUMBER=8
[2025-10-07 14:53:50] Set ATHENA_CORE_NUMBER=8
[2025-10-07 14:53:51] Starting ATLAS job with PandaID=6834014972
[2025-10-07 14:53:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 16:00:05]  *** The last 200 lines of the pilot log: ***
[2025-10-07 16:00:05] ]
[2025-10-07 16:00:05] 2025-10-07 19:59:02,904 | INFO     | transferring file log.46376905._133779.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6834014972/log.46376905._133779.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-07 16:00:05] 2025-10-07 19:59:02,904 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6834014972/log.46376905._133779.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._133779.job
[2025-10-07 16:00:05] 2025-10-07 19:59:02,904 | INFO     | time since job start (3849s) is within the limit (172800.0s)
[2025-10-07 16:00:05] 2025-10-07 19:59:03,091 | INFO     | adding to output.list: log.46376905._133779.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/a0/log.46376905._133779.job.log.tg
[2025-10-07 16:00:05] 2025-10-07 19:59:03,092 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 16:00:05] 2025-10-07 19:59:03,092 | INFO     | summary of transferred files:
[2025-10-07 16:00:05] 2025-10-07 19:59:03,092 | INFO     |  -- lfn=log.46376905._133779.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 16:00:05] 2025-10-07 19:59:03,092 | INFO     | stage-out finished correctly
[2025-10-07 16:00:05] 2025-10-07 19:59:03,263 | INFO     | number of running child processes to parent process 488422: 1
[2025-10-07 16:00:05] 2025-10-07 19:59:03,264 | INFO     | maximum number of monitored processes: 6
[2025-10-07 16:00:05] 2025-10-07 19:59:04,146 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 16:00:05] 2025-10-07 19:59:04,209 | INFO     | job 6834014972 has state=finished
[2025-10-07 16:00:05] 2025-10-07 19:59:04,209 | INFO     | preparing for final server update for job 6834014972 in state='finished'
[2025-10-07 16:00:05] 2025-10-07 19:59:04,209 | INFO     | this job has now completed (state=finished)
[2025-10-07 16:00:05] 2025-10-07 19:59:04,209 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 16:00:05] 2025-10-07 19:59:04,209 | INFO     | log transfer has been attempted: DONE
[2025-10-07 16:00:05] 2025-10-07 19:59:04,209 | INFO     | job 6834014972 has finished - writing final server update
[2025-10-07 16:00:05] 2025-10-07 19:59:04,209 | INFO     | total number of processed events: 400 (read)
[2025-10-07 16:00:05] 2025-10-07 19:59:04,225 | INFO     | executing command: lscpu
[2025-10-07 16:00:05] 2025-10-07 19:59:04,321 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 16:00:05] 2025-10-07 19:59:04,912 | INFO     | time since job start (3851s) is within the limit (172800.0s)
[2025-10-07 16:00:05] 2025-10-07 19:59:05,767 | INFO     | monitor loop #266: job 0:6834014972 is in state 'finished'
[2025-10-07 16:00:05] 2025-10-07 19:59:05,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 16:00:05] 2025-10-07 19:59:06,920 | INFO     | time since job start (3853s) is within the limit (172800.0s)
[2025-10-07 16:00:05] 2025-10-07 19:59:08,272 | INFO     | monitor loop #267: job 0:6834014972 is in state 'finished'
[2025-10-07 16:00:05] 2025-10-07 19:59:08,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 16:00:05] 2025-10-07 19:59:08,927 | INFO     | time since job start (3855s) is within the limit (172800.0s)
[2025-10-07 16:00:05] 2025-10-07 19:59:10,776 | INFO     | monitor loop #268: job 0:6834014972 is in state 'finished'
[2025-10-07 16:00:05] 2025-10-07 19:59:10,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 16:00:05] 2025-10-07 19:59:10,932 | INFO     | time since job start (3857s) is within the limit (172800.0s)
[2025-10-07 16:00:05] 2025-10-07 19:59:12,938 | INFO     | time since job start (3859s) is within the limit (172800.0s)
[2025-10-07 16:00:05] 2025-10-07 19:59:13,281 | INFO     | monitor loop #269: job 0:6834014972 is in state 'finished'
[2025-10-07 16:00:05] 2025-10-07 19:59:13,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 16:00:05] 2025-10-07 19:59:14,604 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 16:00:05] 2025-10-07 19:59:14,627 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.2626562500004
[2025-10-07 16:00:05] 2025-10-07 19:59:14,646 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6834014972/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 16:00:05] 2025-10-07 19:59:14,647 | INFO     | extracted standard info from prmon json
[2025-10-07 16:00:05] 2025-10-07 19:59:14,647 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 16:00:05] 2025-10-07 19:59:14,647 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 16:00:05] 2025-10-07 19:59:14,647 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 16:00:05] 2025-10-07 19:59:14,647 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | fitting pss+swap vs Time
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | sum of square deviations: 51571840.98181818
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | sum of deviations: -1330940854.6545453
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | mean x: 1759865357.0181818
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | mean y: 2206708.654545455
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | -- intersect: 45419951310.25764
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | intersect: 45419951310.25764
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | chi2: 0.06294921070152952
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | -- intersect: 45419951310.25764
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | current memory leak: -25.81 B/s (using 55 data points, chi2=0.06)
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | could have reported an average CPU frequency of 3794 MHz (6 samples)
[2025-10-07 16:00:05] 2025-10-07 19:59:14,648 | INFO     | ..............................
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . Timing measurements:
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . get job = 0 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . initial setup = 6 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . payload setup = 33 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . stage-in = 0 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . payload execution = 3757 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . stage-out = 1 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | . log creation = 0 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,649 | INFO     | ..............................
[2025-10-07 16:00:05] 2025-10-07 19:59:14,778 | INFO     | PID=456602 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-07 16:00:05] 2025-10-07 19:59:14,778 | INFO     | .. there are 33 such processes running
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | 
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | job summary report
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | --------------------------------------------------
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | PanDA job id: 6834014972
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | task id: 46376905
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | errors: (none)
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | pilot state: finished 
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | transexitcode: 0
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | exeerrorcode: 0
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | exeerrordiag: 
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | exitcode: 0
[2025-10-07 16:00:05] 2025-10-07 19:59:14,856 | INFO     | exitmsg: OK
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | cpuconsumptiontime: 17727 s
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | nevents: 400
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | neventsw: 0
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | pid: 488422
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | pgrp: 488422
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | corecount: 8
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | event service: False
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | sizes: {0: 2348766, 11: 2348766, 22: 2349084, 32: 2349084, 3794: 2374919, 3797: 2383917, 3798: 2384101, 3809: 2384295}
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | --------------------------------------------------
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | 
[2025-10-07 16:00:05] 2025-10-07 19:59:14,857 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,874 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | job 6834014972 has completed (purged errors)
[2025-10-07 16:00:05] 2025-10-07 19:59:14,875 | INFO     | overall cleanup function is called
[2025-10-07 16:00:05] 2025-10-07 19:59:15,884 | INFO     | --- collectZombieJob: --- 10, [488422]
[2025-10-07 16:00:05] 2025-10-07 19:59:15,885 | INFO     | zombie collector waiting for pid 488422
[2025-10-07 16:00:05] 2025-10-07 19:59:15,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 16:00:05] 2025-10-07 19:59:15,885 | INFO     | collected zombie processes
[2025-10-07 16:00:05] 2025-10-07 19:59:15,885 | INFO     | will attempt to kill all subprocesses of pid=488422
[2025-10-07 16:00:05] 2025-10-07 19:59:16,302 | INFO     | process IDs to be killed: [488422] (in reverse order)
[2025-10-07 16:00:05] 2025-10-07 19:59:16,453 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 16:00:05] 2025-10-07 19:59:16,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 16:00:05] 2025-10-07 19:59:16,476 | INFO     | did not find any defunct processes belonging to 488422
[2025-10-07 16:00:05] 2025-10-07 19:59:16,499 | INFO     | did not find any defunct processes belonging to 488422
[2025-10-07 16:00:05] 2025-10-07 19:59:16,499 | INFO     | ready for new job
[2025-10-07 16:00:05] 2025-10-07 19:59:16,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 16:00:05] 2025-10-07 19:59:16,501 | INFO     | ***************************************
[2025-10-07 16:00:05] 2025-10-07 19:59:16,501 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 16:00:05] 2025-10-07 19:59:16,501 | INFO     | ***************************************
[2025-10-07 16:00:05] 2025-10-07 19:59:16,501 | INFO     | 
[2025-10-07 16:00:05] 2025-10-07 19:59:16,517 | INFO     | architecture information:
[2025-10-07 16:00:05] 2025-10-07 19:59:16,518 | INFO     | executing command: cat /etc/os-release
[2025-10-07 16:00:05] 2025-10-07 19:59:16,592 | INFO     | cat /etc/os-release:
[2025-10-07 16:00:05] NAME="CentOS Linux"
[2025-10-07 16:00:05] VERSION="7 (Core)"
[2025-10-07 16:00:05] ID="centos"
[2025-10-07 16:00:05] ID_LIKE="rhel fedora"
[2025-10-07 16:00:05] VERSION_ID="7"
[2025-10-07 16:00:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 16:00:05] ANSI_COLOR="0;31"
[2025-10-07 16:00:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 16:00:05] HOME_URL="https://www.centos.org/"
[2025-10-07 16:00:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 16:00:05] 
[2025-10-07 16:00:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 16:00:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 16:00:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 16:00:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 16:00:05] 
[2025-10-07 16:00:05] 2025-10-07 19:59:16,592 | INFO     | ***************************************
[2025-10-07 16:00:05] 2025-10-07 19:59:17,095 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-07 16:00:05] 2025-10-07 19:59:17,106 | INFO     | sufficient remaining disk space (96694435840 B)
[2025-10-07 16:00:05] 2025-10-07 19:59:17,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 16:00:05] 2025-10-07 19:59:17,106 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 16:00:05] 2025-10-07 19:59:17,106 | INFO     | update_server=False
[2025-10-07 16:00:05] 2025-10-07 19:59:17,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 16:00:05] 2025-10-07 19:59:17,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 16:00:05] 2025-10-07 19:59:17,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 16:00:05] 2025-10-07 19:59:17,107 | INFO     | aborting loop
[2025-10-07 16:00:05] 2025-10-07 19:59:17,633 | INFO     | all payload control threads have been joined
[2025-10-07 16:00:05] 2025-10-07 19:59:17,718 | INFO     | all data control threads have been joined
[2025-10-07 16:00:05] 2025-10-07 19:59:17,814 | INFO     | all job control threads have been joined
[2025-10-07 16:00:05] 2025-10-07 19:59:18,113 | INFO     | [job] retrieve thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,117 | INFO     | [job] job monitor thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,229 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,249 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,290 | INFO     | [payload] failed_post thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,349 | INFO     | [job] validate thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,639 | INFO     | [payload] control thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,722 | INFO     | [data] control thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:18,820 | INFO     | [job] control thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:19,076 | INFO     | [payload] validate_post thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:19,113 | INFO     | [data] copytool_out thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:19,245 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 16:00:05] 2025-10-07 19:59:19,373 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:19,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:19,573 | INFO     | [data] copytool_in thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:19,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 16:00:05] 2025-10-07 19:59:20,725 | INFO     | [job] queue monitor thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:23,254 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 16:00:05] 2025-10-07 19:59:47,423 | INFO     | PID=456602 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-07 16:00:05] 2025-10-07 19:59:47,423 | INFO     | .. there are 33 such processes running
[2025-10-07 16:00:05] 2025-10-07 19:59:47,423 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 16:00:05] 2025-10-07 19:59:47,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 16:00:05] 2025-10-07 19:59:47,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 16:00:05] 2025-10-07 19:59:59,318 | INFO     | [monitor] cgroup control has ended
[2025-10-07 16:00:05] 2025-10-07 19:59:59,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139815313594176)>', '<ExcThread(monitor, started 139814582077184)>']
[2025-10-07 16:00:05] 2025-10-07 20:00:00,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 16:00:05] 2025-10-07 20:00:00,497 | INFO     | [monitor] control thread has ended
[2025-10-07 16:00:05] 2025-10-07 20:00:04,896 | INFO     | all workflow threads have been joined
[2025-10-07 16:00:05] 2025-10-07 20:00:04,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 16:00:05] 2025-10-07 20:00:04,897 | INFO     | traces error code: 0
[2025-10-07 16:00:05] 2025-10-07 20:00:04,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 16:00:05] 2025-10-07 20:00:05,150 [wrapper] ==== pilot stdout END ====
[2025-10-07 16:00:05] 2025-10-07 20:00:05,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 16:00:05] 2025-10-07 20:00:05,183 [wrapper] pilotpid: 456602
[2025-10-07 16:00:05] 2025-10-07 20:00:05,199 [wrapper] Pilot exit status: 0
[2025-10-07 16:00:05] 2025-10-07 20:00:05,209 [wrapper] pandaids: 6834014972
[2025-10-07 16:00:05] 2025-10-07 20:00:05,376 [wrapper] cleanup supervisor_pilot 1526805 456603
[2025-10-07 16:00:05] 2025-10-07 20:00:05,386 [wrapper] Test setup, not cleaning
[2025-10-07 16:00:05] 2025-10-07 20:00:05,388 [wrapper] apfmon messages muted
[2025-10-07 16:00:05] 2025-10-07 20:00:05,390 [wrapper] ==== wrapper stdout END ====
[2025-10-07 16:00:05] 2025-10-07 20:00:05,404 [wrapper] ==== wrapper stderr END ====
[2025-10-07 16:00:05]  *** Error codes and diagnostics ***
[2025-10-07 16:00:05]     "exeErrorCode": 0,
[2025-10-07 16:00:05]     "exeErrorDiag": "",
[2025-10-07 16:00:05]     "pilotErrorCode": 0,
[2025-10-07 16:00:05]     "pilotErrorDiag": "",
[2025-10-07 16:00:05]  *** Listing of results directory ***
[2025-10-07 16:00:05] total 381720
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas    552446 Oct  7 06:56 pilot3.tar.gz
[2025-10-07 16:00:05] -rwx------. 1 boincer umatlas     36292 Oct  7 07:33 runpilot2-wrapper.sh
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas      5112 Oct  7 07:33 queuedata.json
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas       100 Oct  7 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 16:00:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 14:53 run_atlas
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas       105 Oct  7 14:53 job.xml
[2025-10-07 16:00:05] -rw-r--r--. 2 boincer umatlas 213280468 Oct  7 14:53 EVNT.46376901._003782.pool.root.1
[2025-10-07 16:00:05] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 14:53 start_atlas.sh
[2025-10-07 16:00:05] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 14:53 shared
[2025-10-07 16:00:05] -rw-r--r--. 2 boincer umatlas    565605 Oct  7 14:53 input.tar.gz
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas         0 Oct  7 14:53 boinc_lockfile
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas      2519 Oct  7 14:53 pandaJob.out
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas    977512 Oct  7 14:54 agis_schedconf.cvmfs.json
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas   1560401 Oct  7 14:54 agis_ddmendpoints.agis.ALL.json
[2025-10-07 16:00:05] drwx------. 4 boincer umatlas      4096 Oct  7 14:54 pilot3
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas      7158 Oct  7 15:56 init_data.xml
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas 171970243 Oct  7 15:58 HITS.46376905._133779.pool.root.1
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas       529 Oct  7 15:58 boinc_task_state.xml
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas        95 Oct  7 15:58 pilot_heartbeat.json
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas      1030 Oct  7 15:58 memory_monitor_summary.json
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas    319986 Oct  7 15:59 log.46376905._133779.job.log.tgz.1
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas      7770 Oct  7 15:59 heartbeat.json
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 15:59 boinc_mmap_file
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas        27 Oct  7 15:59 wrapper_checkpoint.txt
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas      4823 Oct  7 16:00 pilotlog.txt
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas    548733 Oct  7 16:00 log.46376905._133779.job.log.1
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas       357 Oct  7 16:00 output.list
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas       620 Oct  7 16:00 runtime_log
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas    890880 Oct  7 16:00 result.tar.gz
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas      8693 Oct  7 16:00 runtime_log.err
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas       650 Oct  7 16:00 0mPLDm17KQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNcLMDmcn14km.diag
[2025-10-07 16:00:05] -rw-r--r--. 1 boincer umatlas     22436 Oct  7 16:00 stderr.txt
[2025-10-07 16:00:05] HITS file was successfully produced:
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas 171970243 Oct  7 15:58 shared/HITS.pool.root.1
[2025-10-07 16:00:05]  *** Contents of shared directory: ***
[2025-10-07 16:00:05] total 377676
[2025-10-07 16:00:05] -rw-r--r--. 2 boincer umatlas 213280468 Oct  7 14:53 ATLAS.root_0
[2025-10-07 16:00:05] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 14:53 start_atlas.sh
[2025-10-07 16:00:05] -rw-r--r--. 2 boincer umatlas    565605 Oct  7 14:53 input.tar.gz
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas 171970243 Oct  7 15:58 HITS.pool.root.1
[2025-10-07 16:00:05] -rw-------. 1 boincer umatlas    890880 Oct  7 16:00 result.tar.gz
16:00:28 (420538): run_atlas exited; CPU time 17816.258000
16:00:28 (420538): called boinc_finish(0)

</stderr_txt>
]]>

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