Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:24:14 (2865295): wrapper (7.7.26015): starting
10:24:14 (2865295): wrapper: running run_atlas (--nthreads 6)
[2025-10-08 10:24:14] Arguments: --nthreads 6
[2025-10-08 10:24:14] Threads: 6
[2025-10-08 10:24:14] Checking for CVMFS
[2025-10-08 10:24:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 10:24:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 10:24:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 10:24:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 10:24:14] 2.11.5.0 4181615 10837 106596 151453 3 57 12601568 20971521 929 130560 0 21997434 99.996 355583 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-08 10:24:14] CVMFS is ok
[2025-10-08 10:24:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 10:24:14] Checking for apptainer binary...
[2025-10-08 10:24:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 10:24:14] Running /usr/bin/apptainer --version
[2025-10-08 10:24:14] apptainer version 1.3.6-1.el9
[2025-10-08 10:24:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 10:24:14] testio006
[2025-10-08 10:24:14] apptainer works
[2025-10-08 10:24:14] Set ATHENA_PROC_NUMBER=6
[2025-10-08 10:24:14] Set ATHENA_CORE_NUMBER=6
[2025-10-08 10:24:14] Starting ATLAS job with PandaID=6834882110
[2025-10-08 10:24:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 11:29:55]  *** The last 200 lines of the pilot log: ***
[2025-10-08 11:29:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-08 11:29:55]  replicas=None
[2025-10-08 11:29:55]  scope=mc23_13p6TeV
[2025-10-08 11:29:55]  status=None
[2025-10-08 11:29:55]  status_code=0
[2025-10-08 11:29:55]  storage_token=
[2025-10-08 11:29:55]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6834882110/log.46376905._134954.job.log.tgz.1
[2025-10-08 11:29:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/f2/log.46376905._134954.job.log.tgz.1
[2025-10-08 11:29:55]  workdir=None
[2025-10-08 11:29:55] ]
[2025-10-08 11:29:55] 2025-10-08 02:29:16,314 | INFO     | transferring file log.46376905._134954.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6834882110/log.46376905._134954.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-08 11:29:55] 2025-10-08 02:29:16,314 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6834882110/log.46376905._134954.job.log.tgz.1 /var/lib/boinc/slots/0/log.46376905._134954.job
[2025-10-08 11:29:55] 2025-10-08 02:29:16,325 | INFO     | adding to output.list: log.46376905._134954.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/f2/log.46376905._134954.job.log.tg
[2025-10-08 11:29:55] 2025-10-08 02:29:16,325 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 11:29:55] 2025-10-08 02:29:16,325 | INFO     | summary of transferred files:
[2025-10-08 11:29:55] 2025-10-08 02:29:16,325 | INFO     |  -- lfn=log.46376905._134954.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 11:29:55] 2025-10-08 02:29:16,326 | INFO     | stage-out finished correctly
[2025-10-08 11:29:55] 2025-10-08 02:29:17,783 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 11:29:55] 2025-10-08 02:29:18,103 | INFO     | time since job start (3893s) is within the limit (172800.0s)
[2025-10-08 11:29:55] 2025-10-08 02:29:18,661 | INFO     | monitor loop #288: job 0:6834882110 is in state 'finished'
[2025-10-08 11:29:55] 2025-10-08 02:29:18,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 11:29:55] 2025-10-08 02:29:20,108 | INFO     | time since job start (3895s) is within the limit (172800.0s)
[2025-10-08 11:29:55] 2025-10-08 02:29:20,453 | INFO     | job 6834882110 has state=finished
[2025-10-08 11:29:55] 2025-10-08 02:29:20,453 | INFO     | preparing for final server update for job 6834882110 in state='finished'
[2025-10-08 11:29:55] 2025-10-08 02:29:20,453 | INFO     | this job has now completed (state=finished)
[2025-10-08 11:29:55] 2025-10-08 02:29:20,454 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 11:29:55] 2025-10-08 02:29:20,454 | INFO     | log transfer has been attempted: DONE
[2025-10-08 11:29:55] 2025-10-08 02:29:20,454 | INFO     | job 6834882110 has finished - writing final server update
[2025-10-08 11:29:55] 2025-10-08 02:29:20,454 | INFO     | total number of processed events: 400 (read)
[2025-10-08 11:29:55] 2025-10-08 02:29:20,454 | INFO     | executing command: lscpu
[2025-10-08 11:29:55] 2025-10-08 02:29:20,469 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 11:29:55] 2025-10-08 02:29:21,164 | INFO     | monitor loop #289: job 0:6834882110 is in state 'finished'
[2025-10-08 11:29:55] 2025-10-08 02:29:21,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 11:29:55] 2025-10-08 02:29:22,114 | INFO     | time since job start (3897s) is within the limit (172800.0s)
[2025-10-08 11:29:55] 2025-10-08 02:29:23,329 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 11:29:55] 2025-10-08 02:29:23,332 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4034.7074374999997
[2025-10-08 11:29:55] 2025-10-08 02:29:23,335 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6834882110/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 11:29:55] 2025-10-08 02:29:23,335 | INFO     | extracted standard info from prmon json
[2025-10-08 11:29:55] 2025-10-08 02:29:23,335 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 11:29:55] 2025-10-08 02:29:23,335 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 11:29:55] 2025-10-08 02:29:23,336 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 11:29:55] 2025-10-08 02:29:23,336 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 11:29:55] 2025-10-08 02:29:23,337 | INFO     | fitting pss+swap vs Time
[2025-10-08 11:29:55] 2025-10-08 02:29:23,337 | INFO     | sum of square deviations: 57407588.0
[2025-10-08 11:29:55] 2025-10-08 02:29:23,337 | INFO     | sum of deviations: -7646579908.999999
[2025-10-08 11:29:55] 2025-10-08 02:29:23,337 | INFO     | mean x: 1759888699.0
[2025-10-08 11:29:55] 2025-10-08 02:29:23,337 | INFO     | mean y: 2718506.3859649124
[2025-10-08 11:29:55] 2025-10-08 02:29:23,337 | INFO     | -- intersect: 234416496138.875
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | intersect: 234416496138.875
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | chi2: 0.13011784976929594
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | -- intersect: 234416496138.875
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | current memory leak: -133.20 B/s (using 57 data points, chi2=0.13)
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | could have reported an average CPU frequency of 4004 MHz (6 samples)
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | ..............................
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | . Timing measurements:
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | . get job = 0 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,338 | INFO     | . initial setup = 5 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,339 | INFO     | . payload setup = 3 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,339 | INFO     | . stage-in = 0 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,339 | INFO     | . payload execution = 3869 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,339 | INFO     | . stage-out = 0 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,339 | INFO     | . log creation = 0 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,339 | INFO     | ..............................
[2025-10-08 11:29:55] 2025-10-08 02:29:23,395 | INFO     | 
[2025-10-08 11:29:55] 2025-10-08 02:29:23,395 | INFO     | job summary report
[2025-10-08 11:29:55] 2025-10-08 02:29:23,395 | INFO     | --------------------------------------------------
[2025-10-08 11:29:55] 2025-10-08 02:29:23,395 | INFO     | PanDA job id: 6834882110
[2025-10-08 11:29:55] 2025-10-08 02:29:23,395 | INFO     | task id: 46376905
[2025-10-08 11:29:55] 2025-10-08 02:29:23,395 | INFO     | errors: (none)
[2025-10-08 11:29:55] 2025-10-08 02:29:23,395 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | pilot state: finished 
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | transexitcode: 0
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | exeerrorcode: 0
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | exeerrordiag: 
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | exitcode: 0
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | exitmsg: OK
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | cpuconsumptiontime: 21036 s
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | nevents: 400
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | neventsw: 0
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | pid: 2875885
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | pgrp: 2875885
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | corecount: 6
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | event service: False
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | sizes: {0: 2348544, 1: 2348743, 4: 2349005, 11: 2349033, 3876: 2374878, 3877: 2384059, 3879: 2384059, 3884: 2384253}
[2025-10-08 11:29:55] 2025-10-08 02:29:23,396 | INFO     | --------------------------------------------------
[2025-10-08 11:29:55] 2025-10-08 02:29:23,397 | INFO     | 
[2025-10-08 11:29:55] 2025-10-08 02:29:23,397 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-08 11:29:55] 2025-10-08 02:29:23,409 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 11:29:55] 2025-10-08 02:29:23,410 | INFO     | job 6834882110 has completed (purged errors)
[2025-10-08 11:29:55] 2025-10-08 02:29:23,411 | INFO     | overall cleanup function is called
[2025-10-08 11:29:55] 2025-10-08 02:29:24,417 | INFO     | --- collectZombieJob: --- 10, [2875885]
[2025-10-08 11:29:55] 2025-10-08 02:29:24,417 | INFO     | zombie collector waiting for pid 2875885
[2025-10-08 11:29:55] 2025-10-08 02:29:24,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 11:29:55] 2025-10-08 02:29:24,417 | INFO     | collected zombie processes
[2025-10-08 11:29:55] 2025-10-08 02:29:24,417 | INFO     | will attempt to kill all subprocesses of pid=2875885
[2025-10-08 11:29:55] 2025-10-08 02:29:24,482 | INFO     | process IDs to be killed: [2875885] (in reverse order)
[2025-10-08 11:29:55] 2025-10-08 02:29:24,521 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 11:29:55] 2025-10-08 02:29:24,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 11:29:55] 2025-10-08 02:29:24,523 | INFO     | did not find any defunct processes belonging to 2875885
[2025-10-08 11:29:55] 2025-10-08 02:29:24,525 | INFO     | did not find any defunct processes belonging to 2875885
[2025-10-08 11:29:55] 2025-10-08 02:29:24,525 | INFO     | ready for new job
[2025-10-08 11:29:55] 2025-10-08 02:29:24,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 11:29:55] 2025-10-08 02:29:24,526 | INFO     | ***************************************
[2025-10-08 11:29:55] 2025-10-08 02:29:24,526 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 11:29:55] 2025-10-08 02:29:24,526 | INFO     | ***************************************
[2025-10-08 11:29:55] 2025-10-08 02:29:24,526 | INFO     | 
[2025-10-08 11:29:55] 2025-10-08 02:29:24,527 | INFO     | architecture information:
[2025-10-08 11:29:55] 2025-10-08 02:29:24,527 | INFO     | executing command: cat /etc/os-release
[2025-10-08 11:29:55] 2025-10-08 02:29:24,537 | INFO     | cat /etc/os-release:
[2025-10-08 11:29:55] NAME="CentOS Linux"
[2025-10-08 11:29:55] VERSION="7 (Core)"
[2025-10-08 11:29:55] ID="centos"
[2025-10-08 11:29:55] ID_LIKE="rhel fedora"
[2025-10-08 11:29:55] VERSION_ID="7"
[2025-10-08 11:29:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 11:29:55] ANSI_COLOR="0;31"
[2025-10-08 11:29:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 11:29:55] HOME_URL="https://www.centos.org/"
[2025-10-08 11:29:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 11:29:55] 
[2025-10-08 11:29:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 11:29:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 11:29:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 11:29:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 11:29:55] 
[2025-10-08 11:29:55] 2025-10-08 02:29:24,537 | INFO     | ***************************************
[2025-10-08 11:29:55] 2025-10-08 02:29:25,040 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-08 11:29:55] 2025-10-08 02:29:25,049 | INFO     | sufficient remaining disk space (86703603712 B)
[2025-10-08 11:29:55] 2025-10-08 02:29:25,049 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 11:29:55] 2025-10-08 02:29:25,049 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 11:29:55] 2025-10-08 02:29:25,049 | INFO     | update_server=False
[2025-10-08 11:29:55] 2025-10-08 02:29:25,049 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 11:29:55] 2025-10-08 02:29:25,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:29:55] 2025-10-08 02:29:25,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 11:29:55] 2025-10-08 02:29:25,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 11:29:55] 2025-10-08 02:29:25,050 | INFO     | aborting loop
[2025-10-08 11:29:55] 2025-10-08 02:29:25,379 | INFO     | all payload control threads have been joined
[2025-10-08 11:29:55] 2025-10-08 02:29:25,882 | INFO     | all job control threads have been joined
[2025-10-08 11:29:55] 2025-10-08 02:29:26,042 | INFO     | all data control threads have been joined
[2025-10-08 11:29:55] 2025-10-08 02:29:26,054 | INFO     | [job] retrieve thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,055 | INFO     | [job] queue monitor thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,055 | INFO     | [job] job monitor thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,384 | INFO     | [payload] control thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,418 | INFO     | [payload] validate_post thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,793 | INFO     | [job] validate thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,842 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,887 | INFO     | [job] control thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,959 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:26,994 | INFO     | [data] copytool_in thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:27,033 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:27,047 | INFO     | [data] control thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:27,055 | INFO     | [data] copytool_out thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:27,371 | INFO     | [payload] failed_post thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:28,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 11:29:55] 2025-10-08 02:29:30,862 | INFO     | [monitor] cgroup control has ended
[2025-10-08 11:29:55] 2025-10-08 02:29:32,359 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:35,623 | INFO     | job.realtimelogging is not enabled
[2025-10-08 11:29:55] 2025-10-08 02:29:36,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 11:29:55] 2025-10-08 02:29:36,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940864440128)>', '<ExcThread(monitor, started 139940067260160)>']
[2025-10-08 11:29:55] 2025-10-08 02:29:41,935 | INFO     | all workflow threads have been joined
[2025-10-08 11:29:55] 2025-10-08 02:29:41,935 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 11:29:55] 2025-10-08 02:29:41,935 | INFO     | traces error code: 0
[2025-10-08 11:29:55] 2025-10-08 02:29:41,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 11:29:55] 2025-10-08 02:29:55,273 | INFO     | PID=2869098 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 11:29:55] 2025-10-08 02:29:55,273 | INFO     | .. there are 2 such processes running
[2025-10-08 11:29:55] 2025-10-08 02:29:55,274 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 11:29:55] 2025-10-08 02:29:55,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 11:29:55] 2025-10-08 02:29:55,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 11:29:55] 2025-10-08 02:29:55,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 11:29:55] 2025-10-08 02:29:55,274 | CRITICAL | thread 'MainThread' is not alive
[2025-10-08 11:29:55] 2025-10-08 02:29:55,274 | INFO     | [monitor] control thread has ended
[2025-10-08 11:29:55] 2025-10-08 02:29:55,347 [wrapper] ==== pilot stdout END ====
[2025-10-08 11:29:55] 2025-10-08 02:29:55,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 11:29:55] 2025-10-08 02:29:55,350 [wrapper] pilotpid: 2869098
[2025-10-08 11:29:55] 2025-10-08 02:29:55,351 [wrapper] Pilot exit status: 0
[2025-10-08 11:29:55] 2025-10-08 02:29:55,358 [wrapper] pandaids: 6834882110
[2025-10-08 11:29:55] 2025-10-08 02:29:55,377 [wrapper] cleanup supervisor_pilot 2909968 2869099
[2025-10-08 11:29:55] 2025-10-08 02:29:55,379 [wrapper] Test setup, not cleaning
[2025-10-08 11:29:55] 2025-10-08 02:29:55,381 [wrapper] apfmon messages muted
[2025-10-08 11:29:55] 2025-10-08 02:29:55,383 [wrapper] ==== wrapper stdout END ====
[2025-10-08 11:29:55] 2025-10-08 02:29:55,384 [wrapper] ==== wrapper stderr END ====
[2025-10-08 11:29:55]  *** Error codes and diagnostics ***
[2025-10-08 11:29:55]     "exeErrorCode": 0,
[2025-10-08 11:29:55]     "exeErrorDiag": "",
[2025-10-08 11:29:55]     "pilotErrorCode": 0,
[2025-10-08 11:29:55]     "pilotErrorDiag": "",
[2025-10-08 11:29:55]  *** Listing of results directory ***
[2025-10-08 11:29:55] total 389676
[2025-10-08 11:29:55] -rwx------. 1 boinc boinc     36292 Oct  7 22:09 runpilot2-wrapper.sh
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc      5112 Oct  7 22:09 queuedata.json
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc    552446 Oct  7 22:09 pilot3.tar.gz
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc       100 Oct  8 10:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 11:29:55] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 10:24 run_atlas
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc       105 Oct  8 10:24 job.xml
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc      9465 Oct  8 10:24 init_data.xml
[2025-10-08 11:29:55] -rw-r--r--. 2 boinc boinc 213628888 Oct  8 10:24 EVNT.46376901._002674.pool.root.1
[2025-10-08 11:29:55] -rw-r--r--. 2 boinc boinc     15120 Oct  8 10:24 start_atlas.sh
[2025-10-08 11:29:55] drwxrwx--x. 2 boinc boinc        68 Oct  8 10:24 shared
[2025-10-08 11:29:55] -rw-r--r--. 2 boinc boinc    565601 Oct  8 10:24 input.tar.gz
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc         0 Oct  8 10:24 boinc_lockfile
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc      2518 Oct  8 10:24 pandaJob.out
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc    979833 Oct  8 10:24 agis_schedconf.cvmfs.json
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc   1560401 Oct  8 10:24 agis_ddmendpoints.agis.ALL.json
[2025-10-08 11:29:55] drwx------. 4 boinc boinc      4096 Oct  8 10:24 pilot3
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc 179777849 Oct  8 11:28 HITS.46376905._134954.pool.root.1
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc       529 Oct  8 11:29 boinc_task_state.xml
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc      1016 Oct  8 11:29 memory_monitor_summary.json
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc    290345 Oct  8 11:29 log.46376905._134954.job.log.tgz.1
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc      7755 Oct  8 11:29 heartbeat.json
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc        27 Oct  8 11:29 wrapper_checkpoint.txt
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc      8192 Oct  8 11:29 boinc_mmap_file
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc       892 Oct  8 11:29 pilotlog.txt
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc        95 Oct  8 11:29 pilot_heartbeat.json
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc    580703 Oct  8 11:29 log.46376905._134954.job.log.1
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc       357 Oct  8 11:29 output.list
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc       620 Oct  8 11:29 runtime_log
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc    890880 Oct  8 11:29 result.tar.gz
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc      8661 Oct  8 11:29 runtime_log.err
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc       641 Oct  8 11:29 JfvMDmhcMQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzAXNDmTwnINn.diag
[2025-10-08 11:29:55] -rw-r--r--. 1 boinc boinc     21501 Oct  8 11:29 stderr.txt
[2025-10-08 11:29:55] HITS file was successfully produced:
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc 179777849 Oct  8 11:28 shared/HITS.pool.root.1
[2025-10-08 11:29:55]  *** Contents of shared directory: ***
[2025-10-08 11:29:55] total 385636
[2025-10-08 11:29:55] -rw-r--r--. 2 boinc boinc 213628888 Oct  8 10:24 ATLAS.root_0
[2025-10-08 11:29:55] -rw-r--r--. 2 boinc boinc     15120 Oct  8 10:24 start_atlas.sh
[2025-10-08 11:29:55] -rw-r--r--. 2 boinc boinc    565601 Oct  8 10:24 input.tar.gz
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc 179777849 Oct  8 11:28 HITS.pool.root.1
[2025-10-08 11:29:55] -rw-------. 1 boinc boinc    890880 Oct  8 11:29 result.tar.gz
11:29:57 (2865295): run_atlas exited; CPU time 21065.848920
11:29:57 (2865295): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN