Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
16:11:14 (2167169): wrapper (7.7.26015): starting
16:11:14 (2167169): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 16:11:14] Arguments: --nthreads 12
[2025-10-07 16:11:14] Threads: 12
[2025-10-07 16:11:14] Checking for CVMFS
[2025-10-07 16:11:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 16:11:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 16:11:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 16:11:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 16:11:14] 2.13.2.0 193085 6859 54440 151446 0 188 16450427 16777217 916 130560 0 25993928 99.998 225206 1201 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-07 16:11:14] CVMFS is ok
[2025-10-07 16:11:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 16:11:14] Checking for apptainer binary...
[2025-10-07 16:11:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 16:11:14] Running /usr/bin/apptainer --version
[2025-10-07 16:11:14] apptainer version 1.3.0-bp160.1.36
[2025-10-07 16:11:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 16:11:14] boinc-runner
[2025-10-07 16:11:14] apptainer works
[2025-10-07 16:11:14] Set ATHENA_PROC_NUMBER=12
[2025-10-07 16:11:14] Set ATHENA_CORE_NUMBER=12
[2025-10-07 16:11:14] Starting ATLAS job with PandaID=6826080664
[2025-10-07 16:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 16:47:35]  *** The last 200 lines of the pilot log: ***
[2025-10-07 16:47:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/39/log.46373048._064382.job.log.tgz.1
[2025-10-07 16:47:35]  workdir=None
[2025-10-07 16:47:35] ]
[2025-10-07 16:47:35] 2025-10-07 21:47:01,301 | INFO     | transferring file log.46373048._064382.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6826080664/log.46373048._064382.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-07 16:47:35] 2025-10-07 21:47:01,301 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6826080664/log.46373048._064382.job.log.tgz.1 /var/lib/boinc/slots/1/log.46373048._064382.job
[2025-10-07 16:47:35] 2025-10-07 21:47:01,312 | INFO     | adding to output.list: log.46373048._064382.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/39/log.46373048._064382.job.log.tg
[2025-10-07 16:47:35] 2025-10-07 21:47:01,313 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 16:47:35] 2025-10-07 21:47:01,313 | INFO     | summary of transferred files:
[2025-10-07 16:47:35] 2025-10-07 21:47:01,313 | INFO     |  -- lfn=log.46373048._064382.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 16:47:35] 2025-10-07 21:47:01,313 | INFO     | stage-out finished correctly
[2025-10-07 16:47:35] 2025-10-07 21:47:01,369 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 16:47:35] 2025-10-07 21:47:01,431 | WARNING  | process 2177903 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 16:47:35] 2025-10-07 21:47:01,432 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6826080664/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,432 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6826080664/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,433 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4200285 B
[2025-10-07 16:47:35] 2025-10-07 21:47:01,433 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15783 B
[2025-10-07 16:47:35] 2025-10-07 21:47:01,433 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-07 16:47:35] 2025-10-07 21:47:01,443 | INFO     | sufficient remaining disk space (3850762190848 B)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,444 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,444 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6826080664: 4481561 B (within 2537553920 B limit)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,444 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6826080664/HITS.46373048._064382.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,444 | INFO     | total size of present files: 0 B (workdir size: 4481561 B)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,444 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6826080664/HITS.46373048._064382.pool.root.1 since it does not exist
[2025-10-07 16:47:35] 2025-10-07 21:47:01,503 | INFO     | number of running child processes to parent process 2177903: 1
[2025-10-07 16:47:35] 2025-10-07 21:47:01,503 | INFO     | maximum number of monitored processes: 6
[2025-10-07 16:47:35] 2025-10-07 21:47:01,612 | INFO     | job 6826080664 has state=finished
[2025-10-07 16:47:35] 2025-10-07 21:47:01,613 | INFO     | preparing for final server update for job 6826080664 in state='finished'
[2025-10-07 16:47:35] 2025-10-07 21:47:01,613 | INFO     | this job has now completed (state=finished)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,613 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,613 | INFO     | log transfer has been attempted: DONE
[2025-10-07 16:47:35] 2025-10-07 21:47:01,613 | INFO     | job 6826080664 has finished - writing final server update
[2025-10-07 16:47:35] 2025-10-07 21:47:01,613 | INFO     | total number of processed events: 400 (read)
[2025-10-07 16:47:35] 2025-10-07 21:47:01,613 | INFO     | executing command: lscpu
[2025-10-07 16:47:35] 2025-10-07 21:47:01,629 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 16:47:35] 2025-10-07 21:47:01,776 | INFO     | time since job start (2141s) is within the limit (172800.0s)
[2025-10-07 16:47:35] 2025-10-07 21:47:03,251 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 16:47:35] 2025-10-07 21:47:03,253 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4277.45290625
[2025-10-07 16:47:35] 2025-10-07 21:47:03,255 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6826080664/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 16:47:35] 2025-10-07 21:47:03,256 | INFO     | extracted standard info from prmon json
[2025-10-07 16:47:35] 2025-10-07 21:47:03,256 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 16:47:35] 2025-10-07 21:47:03,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 16:47:35] 2025-10-07 21:47:03,256 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 16:47:35] 2025-10-07 21:47:03,256 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | fitting pss+swap vs Time
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | sum of square deviations: 6798267.0
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | sum of deviations: 220296406.5
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | mean x: 1759872626.5
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | mean y: 2722879.3928571427
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | -- intersect: -57025577938.39889
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | intersect: -57025577938.39889
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | chi2: 0.0011253107169231851
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | -- intersect: -57025577938.39889
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | current memory leak: 32.40 B/s (using 28 data points, chi2=0.00)
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | could have reported an average CPU frequency of 4201 MHz (5 samples)
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | ..............................
[2025-10-07 16:47:35] 2025-10-07 21:47:03,257 | INFO     | . Timing measurements:
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | . get job = 0 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | . initial setup = 2 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | . payload setup = 2 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | . stage-in = 0 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | . payload execution = 2120 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | . stage-out = 0 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | . log creation = 0 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,258 | INFO     | ..............................
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | 
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | job summary report
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | --------------------------------------------------
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | PanDA job id: 6826080664
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | task id: 46373048
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | errors: (none)
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | pilot state: finished 
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | transexitcode: 0
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | exeerrorcode: 0
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | exeerrordiag: 
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | exitcode: 0
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | exitmsg: OK
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | cpuconsumptiontime: 22838 s
[2025-10-07 16:47:35] 2025-10-07 21:47:03,296 | INFO     | nevents: 400
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | neventsw: 0
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | pid: 2177903
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | pgrp: 2177903
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | corecount: 12
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | event service: False
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | sizes: {0: 2347962, 1: 2348818, 2: 2349080, 11: 2349108, 2126: 2374205, 2128: 2383387, 2130: 2383585}
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | --------------------------------------------------
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | 
[2025-10-07 16:47:35] 2025-10-07 21:47:03,297 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-07 16:47:35] 2025-10-07 21:47:03,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | job 6826080664 has completed (purged errors)
[2025-10-07 16:47:35] 2025-10-07 21:47:03,309 | INFO     | overall cleanup function is called
[2025-10-07 16:47:35] 2025-10-07 21:47:04,316 | INFO     | --- collectZombieJob: --- 10, [2177903]
[2025-10-07 16:47:35] 2025-10-07 21:47:04,316 | INFO     | zombie collector waiting for pid 2177903
[2025-10-07 16:47:35] 2025-10-07 21:47:04,317 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 16:47:35] 2025-10-07 21:47:04,317 | INFO     | collected zombie processes
[2025-10-07 16:47:35] 2025-10-07 21:47:04,317 | INFO     | will attempt to kill all subprocesses of pid=2177903
[2025-10-07 16:47:35] 2025-10-07 21:47:04,370 | INFO     | process IDs to be killed: [2177903] (in reverse order)
[2025-10-07 16:47:35] 2025-10-07 21:47:04,400 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 16:47:35] 2025-10-07 21:47:04,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 16:47:35] 2025-10-07 21:47:04,403 | INFO     | did not find any defunct processes belonging to 2177903
[2025-10-07 16:47:35] 2025-10-07 21:47:04,405 | INFO     | did not find any defunct processes belonging to 2177903
[2025-10-07 16:47:35] 2025-10-07 21:47:04,406 | INFO     | ready for new job
[2025-10-07 16:47:35] 2025-10-07 21:47:04,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 16:47:35] 2025-10-07 21:47:04,407 | INFO     | ***************************************
[2025-10-07 16:47:35] 2025-10-07 21:47:04,407 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 16:47:35] 2025-10-07 21:47:04,407 | INFO     | ***************************************
[2025-10-07 16:47:35] 2025-10-07 21:47:04,407 | INFO     | 
[2025-10-07 16:47:35] 2025-10-07 21:47:04,408 | INFO     | architecture information:
[2025-10-07 16:47:35] 2025-10-07 21:47:04,408 | INFO     | executing command: cat /etc/os-release
[2025-10-07 16:47:35] 2025-10-07 21:47:04,414 | INFO     | cat /etc/os-release:
[2025-10-07 16:47:35] NAME="CentOS Linux"
[2025-10-07 16:47:35] VERSION="7 (Core)"
[2025-10-07 16:47:35] ID="centos"
[2025-10-07 16:47:35] ID_LIKE="rhel fedora"
[2025-10-07 16:47:35] VERSION_ID="7"
[2025-10-07 16:47:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 16:47:35] ANSI_COLOR="0;31"
[2025-10-07 16:47:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 16:47:35] HOME_URL="https://www.centos.org/"
[2025-10-07 16:47:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 16:47:35] 
[2025-10-07 16:47:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 16:47:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 16:47:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 16:47:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 16:47:35] 
[2025-10-07 16:47:35] 2025-10-07 21:47:04,414 | INFO     | ***************************************
[2025-10-07 16:47:35] 2025-10-07 21:47:04,917 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-07 16:47:35] 2025-10-07 21:47:04,924 | INFO     | sufficient remaining disk space (3850756947968 B)
[2025-10-07 16:47:35] 2025-10-07 21:47:04,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 16:47:35] 2025-10-07 21:47:04,924 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 16:47:35] 2025-10-07 21:47:04,924 | INFO     | update_server=False
[2025-10-07 16:47:35] 2025-10-07 21:47:04,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 16:47:35] 2025-10-07 21:47:04,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 16:47:35] 2025-10-07 21:47:04,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 16:47:35] 2025-10-07 21:47:04,976 | INFO     | all payload control threads have been joined
[2025-10-07 16:47:35] 2025-10-07 21:47:05,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 16:47:35] 2025-10-07 21:47:05,010 | INFO     | aborting loop
[2025-10-07 16:47:35] 2025-10-07 21:47:05,301 | INFO     | all data control threads have been joined
[2025-10-07 16:47:35] 2025-10-07 21:47:05,928 | INFO     | [job] retrieve thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:05,928 | INFO     | [job] queue monitor thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:05,981 | INFO     | [payload] control thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,015 | INFO     | [job] job monitor thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,136 | INFO     | job.realtimelogging is not enabled
[2025-10-07 16:47:35] 2025-10-07 21:47:06,306 | INFO     | [data] control thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,515 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,534 | INFO     | all job control threads have been joined
[2025-10-07 16:47:35] 2025-10-07 21:47:06,792 | INFO     | [job] validate thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,902 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,929 | INFO     | [data] copytool_out thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,953 | INFO     | [payload] validate_post thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:06,968 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:07,141 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:07,223 | INFO     | [data] copytool_in thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:07,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 16:47:35] 2025-10-07 21:47:07,506 | INFO     | [payload] failed_post thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:07,540 | INFO     | [job] control thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:11,414 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 16:47:35] 2025-10-07 21:47:23,606 | INFO     | [monitor] cgroup control has ended
[2025-10-07 16:47:35] 2025-10-07 21:47:25,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065558202176)>', '<ExcThread(monitor, started 140064856209152)>']
[2025-10-07 16:47:35] 2025-10-07 21:47:30,211 | INFO     | all workflow threads have been joined
[2025-10-07 16:47:35] 2025-10-07 21:47:30,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 16:47:35] 2025-10-07 21:47:30,212 | INFO     | traces error code: 0
[2025-10-07 16:47:35] 2025-10-07 21:47:30,212 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 16:47:35] 2025-10-07 21:47:34,912 | INFO     | PID=2171041 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 16:47:35] 2025-10-07 21:47:34,912 | INFO     | .. there are 2 such processes running
[2025-10-07 16:47:35] 2025-10-07 21:47:34,913 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 16:47:35] 2025-10-07 21:47:34,913 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 16:47:35] 2025-10-07 21:47:34,913 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 16:47:35] 2025-10-07 21:47:34,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 16:47:35] 2025-10-07 21:47:34,913 | INFO     | [monitor] control thread has ended
[2025-10-07 16:47:35] 2025-10-07 21:47:34,979 [wrapper] ==== pilot stdout END ====
[2025-10-07 16:47:35] 2025-10-07 21:47:34,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 16:47:35] 2025-10-07 21:47:34,981 [wrapper] pilotpid: 2171041
[2025-10-07 16:47:35] 2025-10-07 21:47:34,983 [wrapper] Pilot exit status: 0
[2025-10-07 16:47:35] 2025-10-07 21:47:34,986 [wrapper] pandaids: 6826080664
[2025-10-07 16:47:35] 2025-10-07 21:47:35,003 [wrapper] cleanup supervisor_pilot 2229105 2171042
[2025-10-07 16:47:35] 2025-10-07 21:47:35,006 [wrapper] Test setup, not cleaning
[2025-10-07 16:47:35] 2025-10-07 21:47:35,008 [wrapper] apfmon messages muted
[2025-10-07 16:47:35] 2025-10-07 21:47:35,009 [wrapper] ==== wrapper stdout END ====
[2025-10-07 16:47:35] 2025-10-07 21:47:35,010 [wrapper] ==== wrapper stderr END ====
[2025-10-07 16:47:35]  *** Error codes and diagnostics ***
[2025-10-07 16:47:35]     "exeErrorCode": 0,
[2025-10-07 16:47:35]     "exeErrorDiag": "",
[2025-10-07 16:47:35]     "pilotErrorCode": 0,
[2025-10-07 16:47:35]     "pilotErrorDiag": "",
[2025-10-07 16:47:35]  *** Listing of results directory ***
[2025-10-07 16:47:35] total 408884
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc    552446 Sep 30 10:16 pilot3.tar.gz
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc      5112 Sep 30 10:35 queuedata.json
[2025-10-07 16:47:35] -rwx------. 1 boinc boinc     36292 Sep 30 10:35 runpilot2-wrapper.sh
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc       100 Oct  7 16:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 16:47:35] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 16:11 run_atlas
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc       105 Oct  7 16:11 job.xml
[2025-10-07 16:47:35] -rw-r--r--. 2 boinc boinc     15120 Oct  7 16:11 start_atlas.sh
[2025-10-07 16:47:35] drwxrwx--x. 1 boinc boinc        76 Oct  7 16:11 shared
[2025-10-07 16:47:35] -rw-r--r--. 2 boinc boinc    565601 Oct  7 16:11 input.tar.gz
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc     10054 Oct  7 16:11 init_data.xml
[2025-10-07 16:47:35] -rw-r--r--. 2 boinc boinc 219490546 Oct  7 16:11 EVNT.46373045._002065.pool.root.1
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc         0 Oct  7 16:11 boinc_setup_complete
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc         0 Oct  7 16:11 boinc_lockfile
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc      2537 Oct  7 16:11 pandaJob.out
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc    979856 Oct  7 16:11 agis_schedconf.cvmfs.json
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc   1560401 Oct  7 16:11 agis_ddmendpoints.agis.ALL.json
[2025-10-07 16:47:35] drwx------. 1 boinc boinc       368 Oct  7 16:11 pilot3
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc       529 Oct  7 16:46 boinc_task_state.xml
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc 193936360 Oct  7 16:46 HITS.46373048._064382.pool.root.1
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc      1027 Oct  7 16:46 memory_monitor_summary.json
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc    350758 Oct  7 16:47 log.46373048._064382.job.log.tgz.1
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc      7786 Oct  7 16:47 heartbeat.json
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc        27 Oct  7 16:47 wrapper_checkpoint.txt
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc      8192 Oct  7 16:47 boinc_mmap_file
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc       822 Oct  7 16:47 pilotlog.txt
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc        95 Oct  7 16:47 pilot_heartbeat.json
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc    351350 Oct  7 16:47 log.46373048._064382.job.log.1
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc       357 Oct  7 16:47 output.list
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc       620 Oct  7 16:47 runtime_log
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc    716800 Oct  7 16:47 result.tar.gz
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc      8727 Oct  7 16:47 runtime_log.err
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc       651 Oct  7 16:47 DHQODmOZrN8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuO6LDmYg5Z2m.diag
[2025-10-07 16:47:35] -rw-r--r--. 1 boinc boinc     22217 Oct  7 16:47 stderr.txt
[2025-10-07 16:47:35] HITS file was successfully produced:
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc 193936360 Oct  7 16:46 shared/HITS.pool.root.1
[2025-10-07 16:47:35]  *** Contents of shared directory: ***
[2025-10-07 16:47:35] total 405012
[2025-10-07 16:47:35] -rw-r--r--. 2 boinc boinc     15120 Oct  7 16:11 start_atlas.sh
[2025-10-07 16:47:35] -rw-r--r--. 2 boinc boinc    565601 Oct  7 16:11 input.tar.gz
[2025-10-07 16:47:35] -rw-r--r--. 2 boinc boinc 219490546 Oct  7 16:11 ATLAS.root_0
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc 193936360 Oct  7 16:46 HITS.pool.root.1
[2025-10-07 16:47:35] -rw-------. 1 boinc boinc    716800 Oct  7 16:47 result.tar.gz
16:47:36 (2167169): run_atlas exited; CPU time 22841.093636
16:47:36 (2167169): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN