Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
14:57:32 (2026893): wrapper (7.7.26015): starting
14:57:32 (2026893): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 14:57:32] Arguments: --nthreads 12
[2025-10-07 14:57:32] Threads: 12
[2025-10-07 14:57:32] Checking for CVMFS
[2025-10-07 14:57:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 14:57:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 14:57:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 14:57:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 14:57:33] 2.13.2.0 193085 6786 54260 151445 1 188 16439178 16777217 873 130560 0 25760522 99.998 223835 1205 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-07 14:57:33] CVMFS is ok
[2025-10-07 14:57:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 14:57:33] Checking for apptainer binary...
[2025-10-07 14:57:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 14:57:33] Running /usr/bin/apptainer --version
[2025-10-07 14:57:33] apptainer version 1.3.0-bp160.1.36
[2025-10-07 14:57:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 14:57:33] boinc-runner
[2025-10-07 14:57:33] apptainer works
[2025-10-07 14:57:33] Set ATHENA_PROC_NUMBER=12
[2025-10-07 14:57:33] Set ATHENA_CORE_NUMBER=12
[2025-10-07 14:57:33] Starting ATLAS job with PandaID=6826080623
[2025-10-07 14:57:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 15:33:49]  *** The last 200 lines of the pilot log: ***
[2025-10-07 15:33:49]  protocol_id=None
[2025-10-07 15:33:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 15:33:49]  replicas=None
[2025-10-07 15:33:49]  scope=mc23_13p6TeV
[2025-10-07 15:33:49]  status=None
[2025-10-07 15:33:49]  status_code=0
[2025-10-07 15:33:49]  storage_token=
[2025-10-07 15:33:49]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6826080623/log.46373048._064341.job.log.tgz.1
[2025-10-07 15:33:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/08/log.46373048._064341.job.log.tgz.1
[2025-10-07 15:33:49]  workdir=None
[2025-10-07 15:33:49] ]
[2025-10-07 15:33:49] 2025-10-07 20:33:12,184 | INFO     | transferring file log.46373048._064341.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6826080623/log.46373048._064341.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-07 15:33:49] 2025-10-07 20:33:12,185 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6826080623/log.46373048._064341.job.log.tgz.1 /var/lib/boinc/slots/1/log.46373048._064341.job
[2025-10-07 15:33:49] 2025-10-07 20:33:12,195 | INFO     | adding to output.list: log.46373048._064341.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/08/log.46373048._064341.job.log.tg
[2025-10-07 15:33:49] 2025-10-07 20:33:12,195 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 15:33:49] 2025-10-07 20:33:12,195 | INFO     | summary of transferred files:
[2025-10-07 15:33:49] 2025-10-07 20:33:12,195 | INFO     |  -- lfn=log.46373048._064341.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 15:33:49] 2025-10-07 20:33:12,196 | INFO     | stage-out finished correctly
[2025-10-07 15:33:49] 2025-10-07 20:33:14,033 | INFO     | time since job start (2135s) is within the limit (172800.0s)
[2025-10-07 15:33:49] 2025-10-07 20:33:14,117 | INFO     | monitor loop #167: job 0:6826080623 is in state 'finished'
[2025-10-07 15:33:49] 2025-10-07 20:33:14,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:33:49] 2025-10-07 20:33:15,264 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 15:33:49] 2025-10-07 20:33:15,929 | INFO     | job 6826080623 has state=finished
[2025-10-07 15:33:49] 2025-10-07 20:33:15,930 | INFO     | preparing for final server update for job 6826080623 in state='finished'
[2025-10-07 15:33:49] 2025-10-07 20:33:15,930 | INFO     | this job has now completed (state=finished)
[2025-10-07 15:33:49] 2025-10-07 20:33:15,930 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 15:33:49] 2025-10-07 20:33:15,930 | INFO     | log transfer has been attempted: DONE
[2025-10-07 15:33:49] 2025-10-07 20:33:15,930 | INFO     | job 6826080623 has finished - writing final server update
[2025-10-07 15:33:49] 2025-10-07 20:33:15,930 | INFO     | total number of processed events: 400 (read)
[2025-10-07 15:33:49] 2025-10-07 20:33:15,931 | INFO     | executing command: lscpu
[2025-10-07 15:33:49] 2025-10-07 20:33:15,948 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 15:33:49] 2025-10-07 20:33:16,038 | INFO     | time since job start (2137s) is within the limit (172800.0s)
[2025-10-07 15:33:49] 2025-10-07 20:33:16,620 | INFO     | monitor loop #168: job 0:6826080623 is in state 'finished'
[2025-10-07 15:33:49] 2025-10-07 20:33:16,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:33:49] 2025-10-07 20:33:17,555 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 15:33:49] 2025-10-07 20:33:17,558 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4204.249812499999
[2025-10-07 15:33:49] 2025-10-07 20:33:17,561 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6826080623/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 15:33:49] 2025-10-07 20:33:17,561 | INFO     | extracted standard info from prmon json
[2025-10-07 15:33:49] 2025-10-07 20:33:17,561 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 15:33:49] 2025-10-07 20:33:17,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 15:33:49] 2025-10-07 20:33:17,561 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 15:33:49] 2025-10-07 20:33:17,561 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | fitting pss+swap vs Time
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | sum of square deviations: 6798267.0
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | sum of deviations: -1145404746.9999998
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | mean x: 1759868203.5
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | mean y: 2819250.0714285714
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | -- intersect: 296513885141.3142
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | intersect: 296513885141.3142
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | chi2: 0.011471313762642031
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | -- intersect: 296513885141.3142
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | current memory leak: -168.48 B/s (using 28 data points, chi2=0.01)
[2025-10-07 15:33:49] 2025-10-07 20:33:17,562 | INFO     | could have reported an average CPU frequency of 3994 MHz (5 samples)
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | ..............................
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . Timing measurements:
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . get job = 0 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . initial setup = 2 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . payload setup = 1 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . stage-in = 0 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . payload execution = 2115 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . stage-out = 0 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | . log creation = 0 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,563 | INFO     | ..............................
[2025-10-07 15:33:49] 2025-10-07 20:33:17,599 | INFO     | 
[2025-10-07 15:33:49] 2025-10-07 20:33:17,599 | INFO     | job summary report
[2025-10-07 15:33:49] 2025-10-07 20:33:17,599 | INFO     | --------------------------------------------------
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | PanDA job id: 6826080623
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | task id: 46373048
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | errors: (none)
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | pilot state: finished 
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | transexitcode: 0
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | exeerrorcode: 0
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | exeerrordiag: 
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | exitcode: 0
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | exitmsg: OK
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | cpuconsumptiontime: 23189 s
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | nevents: 400
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | neventsw: 0
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | pid: 2037641
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | pgrp: 2037641
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | corecount: 12
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | event service: False
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | sizes: {0: 2348841, 1: 2349103, 11: 2349131, 2120: 2374232, 2121: 2383230, 2124: 2383286, 2126: 2383640}
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | --------------------------------------------------
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | 
[2025-10-07 15:33:49] 2025-10-07 20:33:17,600 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | job 6826080623 has completed (purged errors)
[2025-10-07 15:33:49] 2025-10-07 20:33:17,614 | INFO     | overall cleanup function is called
[2025-10-07 15:33:49] 2025-10-07 20:33:18,621 | INFO     | --- collectZombieJob: --- 10, [2037641]
[2025-10-07 15:33:49] 2025-10-07 20:33:18,621 | INFO     | zombie collector waiting for pid 2037641
[2025-10-07 15:33:49] 2025-10-07 20:33:18,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 15:33:49] 2025-10-07 20:33:18,622 | INFO     | collected zombie processes
[2025-10-07 15:33:49] 2025-10-07 20:33:18,622 | INFO     | will attempt to kill all subprocesses of pid=2037641
[2025-10-07 15:33:49] 2025-10-07 20:33:18,679 | INFO     | process IDs to be killed: [2037641] (in reverse order)
[2025-10-07 15:33:49] 2025-10-07 20:33:18,712 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 15:33:49] 2025-10-07 20:33:18,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 15:33:49] 2025-10-07 20:33:18,714 | INFO     | did not find any defunct processes belonging to 2037641
[2025-10-07 15:33:49] 2025-10-07 20:33:18,716 | INFO     | did not find any defunct processes belonging to 2037641
[2025-10-07 15:33:49] 2025-10-07 20:33:18,717 | INFO     | ready for new job
[2025-10-07 15:33:49] 2025-10-07 20:33:18,717 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 15:33:49] 2025-10-07 20:33:18,718 | INFO     | ***************************************
[2025-10-07 15:33:49] 2025-10-07 20:33:18,718 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 15:33:49] 2025-10-07 20:33:18,718 | INFO     | ***************************************
[2025-10-07 15:33:49] 2025-10-07 20:33:18,718 | INFO     | 
[2025-10-07 15:33:49] 2025-10-07 20:33:18,719 | INFO     | architecture information:
[2025-10-07 15:33:49] 2025-10-07 20:33:18,720 | INFO     | executing command: cat /etc/os-release
[2025-10-07 15:33:49] 2025-10-07 20:33:18,726 | INFO     | cat /etc/os-release:
[2025-10-07 15:33:49] NAME="CentOS Linux"
[2025-10-07 15:33:49] VERSION="7 (Core)"
[2025-10-07 15:33:49] ID="centos"
[2025-10-07 15:33:49] ID_LIKE="rhel fedora"
[2025-10-07 15:33:49] VERSION_ID="7"
[2025-10-07 15:33:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 15:33:49] ANSI_COLOR="0;31"
[2025-10-07 15:33:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 15:33:49] HOME_URL="https://www.centos.org/"
[2025-10-07 15:33:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 15:33:49] 
[2025-10-07 15:33:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 15:33:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 15:33:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 15:33:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 15:33:49] 
[2025-10-07 15:33:49] 2025-10-07 20:33:18,726 | INFO     | ***************************************
[2025-10-07 15:33:49] 2025-10-07 20:33:19,228 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-07 15:33:49] 2025-10-07 20:33:19,238 | INFO     | sufficient remaining disk space (3849728294912 B)
[2025-10-07 15:33:49] 2025-10-07 20:33:19,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 15:33:49] 2025-10-07 20:33:19,238 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 15:33:49] 2025-10-07 20:33:19,239 | INFO     | update_server=False
[2025-10-07 15:33:49] 2025-10-07 20:33:19,239 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 15:33:49] 2025-10-07 20:33:19,239 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 15:33:49] 2025-10-07 20:33:19,406 | INFO     | all data control threads have been joined
[2025-10-07 15:33:49] 2025-10-07 20:33:19,961 | INFO     | all job control threads have been joined
[2025-10-07 15:33:49] 2025-10-07 20:33:20,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 15:33:49] 2025-10-07 20:33:20,129 | INFO     | aborting loop
[2025-10-07 15:33:49] 2025-10-07 20:33:20,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 15:33:49] 2025-10-07 20:33:20,243 | INFO     | [job] retrieve thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,243 | INFO     | [job] queue monitor thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,402 | INFO     | [payload] validate_post thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,411 | INFO     | [data] control thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,471 | INFO     | all payload control threads have been joined
[2025-10-07 15:33:49] 2025-10-07 20:33:20,634 | INFO     | [job] validate thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,699 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,771 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,773 | INFO     | [data] copytool_in thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:20,966 | INFO     | [job] control thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:21,133 | INFO     | [job] job monitor thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:21,151 | INFO     | [payload] failed_post thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:21,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 15:33:49] 2025-10-07 20:33:21,376 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:21,476 | INFO     | [payload] control thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:22,244 | INFO     | [data] copytool_out thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:25,310 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:29,737 | INFO     | job.realtimelogging is not enabled
[2025-10-07 15:33:49] 2025-10-07 20:33:30,742 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 15:33:49] 2025-10-07 20:33:41,975 | INFO     | [monitor] cgroup control has ended
[2025-10-07 15:33:49] 2025-10-07 20:33:43,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139805233444672)>', '<ExcThread(monitor, started 139804608034560)>']
[2025-10-07 15:33:49] 2025-10-07 20:33:48,262 | INFO     | all workflow threads have been joined
[2025-10-07 15:33:49] 2025-10-07 20:33:48,262 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 15:33:49] 2025-10-07 20:33:48,263 | INFO     | traces error code: 0
[2025-10-07 15:33:49] 2025-10-07 20:33:48,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 15:33:49] 2025-10-07 20:33:49,173 | INFO     | PID=2030778 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 15:33:49] 2025-10-07 20:33:49,174 | INFO     | .. there are 2 such processes running
[2025-10-07 15:33:49] 2025-10-07 20:33:49,174 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 15:33:49] 2025-10-07 20:33:49,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 15:33:49] 2025-10-07 20:33:49,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 15:33:49] 2025-10-07 20:33:49,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 15:33:49] 2025-10-07 20:33:49,174 | CRITICAL | thread 'MainThread' is not alive
[2025-10-07 15:33:49] 2025-10-07 20:33:49,174 | INFO     | [monitor] control thread has ended
[2025-10-07 15:33:49] 2025-10-07 20:33:49,232 [wrapper] ==== pilot stdout END ====
[2025-10-07 15:33:49] 2025-10-07 20:33:49,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 15:33:49] 2025-10-07 20:33:49,234 [wrapper] pilotpid: 2030778
[2025-10-07 15:33:49] 2025-10-07 20:33:49,235 [wrapper] Pilot exit status: 0
[2025-10-07 15:33:49] 2025-10-07 20:33:49,240 [wrapper] pandaids: 6826080623
[2025-10-07 15:33:49] 2025-10-07 20:33:49,256 [wrapper] cleanup supervisor_pilot 2086094 2030779
[2025-10-07 15:33:49] 2025-10-07 20:33:49,258 [wrapper] Test setup, not cleaning
[2025-10-07 15:33:49] 2025-10-07 20:33:49,260 [wrapper] apfmon messages muted
[2025-10-07 15:33:49] 2025-10-07 20:33:49,262 [wrapper] ==== wrapper stdout END ====
[2025-10-07 15:33:49] 2025-10-07 20:33:49,263 [wrapper] ==== wrapper stderr END ====
[2025-10-07 15:33:49]  *** Error codes and diagnostics ***
[2025-10-07 15:33:49]     "exeErrorCode": 0,
[2025-10-07 15:33:49]     "exeErrorDiag": "",
[2025-10-07 15:33:49]     "pilotErrorCode": 0,
[2025-10-07 15:33:49]     "pilotErrorDiag": "",
[2025-10-07 15:33:49]  *** Listing of results directory ***
[2025-10-07 15:33:49] total 410432
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc    552446 Sep 30 10:16 pilot3.tar.gz
[2025-10-07 15:33:49] -rwx------. 1 boinc boinc     36292 Sep 30 10:35 runpilot2-wrapper.sh
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc      5112 Sep 30 10:35 queuedata.json
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc       100 Oct  7 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 15:33:49] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 14:57 run_atlas
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc       105 Oct  7 14:57 job.xml
[2025-10-07 15:33:49] -rw-r--r--. 2 boinc boinc 221055767 Oct  7 14:57 EVNT.46373045._002063.pool.root.1
[2025-10-07 15:33:49] -rw-r--r--. 2 boinc boinc     15120 Oct  7 14:57 start_atlas.sh
[2025-10-07 15:33:49] drwxrwx--x. 1 boinc boinc        76 Oct  7 14:57 shared
[2025-10-07 15:33:49] -rw-r--r--. 2 boinc boinc    565601 Oct  7 14:57 input.tar.gz
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc     10054 Oct  7 14:57 init_data.xml
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc         0 Oct  7 14:57 boinc_setup_complete
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc         0 Oct  7 14:57 boinc_lockfile
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc      2538 Oct  7 14:57 pandaJob.out
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc    979864 Oct  7 14:57 agis_schedconf.cvmfs.json
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc   1560401 Oct  7 14:57 agis_ddmendpoints.agis.ALL.json
[2025-10-07 15:33:49] drwx------. 1 boinc boinc       368 Oct  7 14:57 pilot3
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc        95 Oct  7 15:32 pilot_heartbeat.json
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc 193929709 Oct  7 15:32 HITS.46373048._064341.pool.root.1
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc       529 Oct  7 15:32 boinc_task_state.xml
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc      1031 Oct  7 15:33 memory_monitor_summary.json
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc    362059 Oct  7 15:33 log.46373048._064341.job.log.tgz.1
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc      7794 Oct  7 15:33 heartbeat.json
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc      8192 Oct  7 15:33 boinc_mmap_file
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc        27 Oct  7 15:33 wrapper_checkpoint.txt
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc       892 Oct  7 15:33 pilotlog.txt
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc    349910 Oct  7 15:33 log.46373048._064341.job.log.1
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc       357 Oct  7 15:33 output.list
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc       620 Oct  7 15:33 runtime_log
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc    727040 Oct  7 15:33 result.tar.gz
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc       651 Oct  7 15:33 tEDMDmDZrN8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLO6LDmKWsxRn.diag
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc      8727 Oct  7 15:33 runtime_log.err
[2025-10-07 15:33:49] -rw-r--r--. 1 boinc boinc     21429 Oct  7 15:33 stderr.txt
[2025-10-07 15:33:49] HITS file was successfully produced:
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc 193929709 Oct  7 15:32 shared/HITS.pool.root.1
[2025-10-07 15:33:49]  *** Contents of shared directory: ***
[2025-10-07 15:33:49] total 406548
[2025-10-07 15:33:49] -rw-r--r--. 2 boinc boinc 221055767 Oct  7 14:57 ATLAS.root_0
[2025-10-07 15:33:49] -rw-r--r--. 2 boinc boinc     15120 Oct  7 14:57 start_atlas.sh
[2025-10-07 15:33:49] -rw-r--r--. 2 boinc boinc    565601 Oct  7 14:57 input.tar.gz
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc 193929709 Oct  7 15:32 HITS.pool.root.1
[2025-10-07 15:33:49] -rw-------. 1 boinc boinc    727040 Oct  7 15:33 result.tar.gz
15:33:50 (2026893): run_atlas exited; CPU time 23188.804479
15:33:50 (2026893): called boinc_finish(0)

</stderr_txt>
]]>

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