Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:04:10 (1436471): wrapper (7.7.26015): starting
14:04:10 (1436471): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 14:04:10] Arguments: --nthreads 8
[2025-10-07 14:04:10] Threads: 8
[2025-10-07 14:04:10] Checking for CVMFS
[2025-10-07 14:04:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 14:04:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 14:04:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 14:04:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 14:04:12] 2.13.2.0 7513 70717 186276 151442 3 734 40010939 40960000 33982 16776704 0 419960222 99.751 270013750 46735 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-07 14:04:12] CVMFS is ok
[2025-10-07 14:04:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 14:04:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 14:04:13] Further information can be found at the LHC@home message board.
[2025-10-07 14:04:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 14:04:13] Checking for apptainer binary...
[2025-10-07 14:04:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 14:04:13] Running /usr/bin/apptainer --version
[2025-10-07 14:04:13] apptainer version 1.4.2-1.el9
[2025-10-07 14:04:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 14:04:13] c-208-40.aglt2.org
[2025-10-07 14:04:13] apptainer works
[2025-10-07 14:04:14] Set ATHENA_PROC_NUMBER=8
[2025-10-07 14:04:14] Set ATHENA_CORE_NUMBER=8
[2025-10-07 14:04:14] Starting ATLAS job with PandaID=6834445336
[2025-10-07 14:04:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 15:21:34]  *** The last 200 lines of the pilot log: ***
[2025-10-07 15:21:34] 2025-10-07 19:20:38,543 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 15:21:34] 2025-10-07 19:20:38,543 | INFO     | summary of transferred files:
[2025-10-07 15:21:34] 2025-10-07 19:20:38,543 | INFO     |  -- lfn=log.46376905._134411.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 15:21:34] 2025-10-07 19:20:38,543 | INFO     | stage-out finished correctly
[2025-10-07 15:21:34] 2025-10-07 19:20:39,167 | INFO     | time since job start (4520s) is within the limit (172800.0s)
[2025-10-07 15:21:34] 2025-10-07 19:20:39,455 | INFO     | monitor loop #313: job 0:6834445336 is in state 'finished'
[2025-10-07 15:21:34] 2025-10-07 19:20:39,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:21:34] 2025-10-07 19:20:41,174 | INFO     | time since job start (4522s) is within the limit (172800.0s)
[2025-10-07 15:21:34] 2025-10-07 19:20:41,479 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 15:21:34] 2025-10-07 19:20:41,960 | INFO     | monitor loop #314: job 0:6834445336 is in state 'finished'
[2025-10-07 15:21:34] 2025-10-07 19:20:41,960 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:21:34] 2025-10-07 19:20:43,181 | INFO     | time since job start (4524s) is within the limit (172800.0s)
[2025-10-07 15:21:34] 2025-10-07 19:20:44,248 | INFO     | job 6834445336 has state=finished
[2025-10-07 15:21:34] 2025-10-07 19:20:44,248 | INFO     | preparing for final server update for job 6834445336 in state='finished'
[2025-10-07 15:21:34] 2025-10-07 19:20:44,249 | INFO     | this job has now completed (state=finished)
[2025-10-07 15:21:34] 2025-10-07 19:20:44,249 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 15:21:34] 2025-10-07 19:20:44,249 | INFO     | log transfer has been attempted: DONE
[2025-10-07 15:21:34] 2025-10-07 19:20:44,249 | INFO     | job 6834445336 has finished - writing final server update
[2025-10-07 15:21:34] 2025-10-07 19:20:44,249 | INFO     | total number of processed events: 400 (read)
[2025-10-07 15:21:34] 2025-10-07 19:20:44,258 | INFO     | executing command: lscpu
[2025-10-07 15:21:34] 2025-10-07 19:20:44,448 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 15:21:34] 2025-10-07 19:20:44,468 | INFO     | monitor loop #315: job 0:6834445336 is in state 'finished'
[2025-10-07 15:21:34] 2025-10-07 19:20:44,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:21:34] 2025-10-07 19:20:45,188 | INFO     | time since job start (4526s) is within the limit (172800.0s)
[2025-10-07 15:21:34] 2025-10-07 19:20:46,971 | INFO     | monitor loop #316: job 0:6834445336 is in state 'finished'
[2025-10-07 15:21:34] 2025-10-07 19:20:46,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:21:34] 2025-10-07 19:20:47,195 | INFO     | time since job start (4528s) is within the limit (172800.0s)
[2025-10-07 15:21:34] 2025-10-07 19:20:48,765 | INFO     | PID=1442682 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 15:21:34] 2025-10-07 19:20:48,765 | INFO     | .. there are 27 such processes running
[2025-10-07 15:21:34] 2025-10-07 19:20:49,475 | INFO     | monitor loop #317: job 0:6834445336 is in state 'finished'
[2025-10-07 15:21:34] 2025-10-07 19:20:49,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:21:34] 2025-10-07 19:20:49,766 | INFO     | time since job start (4530s) is within the limit (172800.0s)
[2025-10-07 15:21:34] 2025-10-07 19:20:51,772 | INFO     | time since job start (4532s) is within the limit (172800.0s)
[2025-10-07 15:21:34] 2025-10-07 19:20:51,979 | INFO     | monitor loop #318: job 0:6834445336 is in state 'finished'
[2025-10-07 15:21:34] 2025-10-07 19:20:51,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 15:21:34] 2025-10-07 19:20:52,804 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 15:21:34] 2025-10-07 19:20:52,808 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.884421875001
[2025-10-07 15:21:34] 2025-10-07 19:20:52,821 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6834445336/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 15:21:34] 2025-10-07 19:20:52,821 | INFO     | extracted standard info from prmon json
[2025-10-07 15:21:34] 2025-10-07 19:20:52,821 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 15:21:34] 2025-10-07 19:20:52,821 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 15:21:34] 2025-10-07 19:20:52,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 15:21:34] 2025-10-07 19:20:52,822 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | fitting pss+swap vs Time
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | sum of square deviations: 85135138.98461549
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | sum of deviations: 4240285032.6307673
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | mean x: 1759862716.0153847
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | mean y: 2480847.369230769
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | -- intersect: -87650157337.12306
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | intersect: -87650157337.12306
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | chi2: 0.3875307573135029
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | -- intersect: -87650157337.12306
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | current memory leak: 49.81 B/s (using 65 data points, chi2=0.39)
[2025-10-07 15:21:34] 2025-10-07 19:20:52,823 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | ..............................
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . Timing measurements:
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . get job = 0 s
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . initial setup = 7 s
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . payload setup = 42 s
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . stage-in = 0 s
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . payload execution = 4405 s
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . stage-out = 0 s
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | . log creation = 0 s
[2025-10-07 15:21:34] 2025-10-07 19:20:52,824 | INFO     | ..............................
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | 
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | job summary report
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | --------------------------------------------------
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | PanDA job id: 6834445336
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | task id: 46376905
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | errors: (none)
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | pilot state: finished 
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | transexitcode: 0
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | exeerrorcode: 0
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | exeerrordiag: 
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | exitcode: 0
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | exitmsg: OK
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | cpuconsumptiontime: 19288 s
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | nevents: 400
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | neventsw: 0
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | pid: 1462360
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | pgrp: 1462360
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | corecount: 8
[2025-10-07 15:21:34] 2025-10-07 19:20:53,238 | INFO     | event service: False
[2025-10-07 15:21:34] 2025-10-07 19:20:53,239 | INFO     | sizes: {0: 2348543, 1: 2348798, 2: 2348826, 13: 2348826, 23: 2348882, 33: 2349172, 34: 2349356, 4451: 2375609, 4452: 2375608, 4453: 2384662, 4456: 2384718, 4467: 2
[2025-10-07 15:21:34] 2025-10-07 19:20:53,239 | INFO     | --------------------------------------------------
[2025-10-07 15:21:34] 2025-10-07 19:20:53,239 | INFO     | 
[2025-10-07 15:21:34] 2025-10-07 19:20:53,239 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | job 6834445336 has completed (purged errors)
[2025-10-07 15:21:34] 2025-10-07 19:20:53,270 | INFO     | overall cleanup function is called
[2025-10-07 15:21:34] 2025-10-07 19:20:54,279 | INFO     | --- collectZombieJob: --- 10, [1462360]
[2025-10-07 15:21:34] 2025-10-07 19:20:54,280 | INFO     | zombie collector waiting for pid 1462360
[2025-10-07 15:21:34] 2025-10-07 19:20:54,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 15:21:34] 2025-10-07 19:20:54,280 | INFO     | collected zombie processes
[2025-10-07 15:21:34] 2025-10-07 19:20:54,280 | INFO     | will attempt to kill all subprocesses of pid=1462360
[2025-10-07 15:21:34] 2025-10-07 19:20:54,729 | INFO     | process IDs to be killed: [1462360] (in reverse order)
[2025-10-07 15:21:34] 2025-10-07 19:20:54,963 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 15:21:34] 2025-10-07 19:20:54,964 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 15:21:34] 2025-10-07 19:20:54,986 | INFO     | did not find any defunct processes belonging to 1462360
[2025-10-07 15:21:34] 2025-10-07 19:20:55,009 | INFO     | did not find any defunct processes belonging to 1462360
[2025-10-07 15:21:34] 2025-10-07 19:20:55,009 | INFO     | ready for new job
[2025-10-07 15:21:34] 2025-10-07 19:20:55,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 15:21:34] 2025-10-07 19:20:55,010 | INFO     | ***************************************
[2025-10-07 15:21:34] 2025-10-07 19:20:55,010 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 15:21:34] 2025-10-07 19:20:55,010 | INFO     | ***************************************
[2025-10-07 15:21:34] 2025-10-07 19:20:55,010 | INFO     | 
[2025-10-07 15:21:34] 2025-10-07 19:20:55,015 | INFO     | architecture information:
[2025-10-07 15:21:34] 2025-10-07 19:20:55,015 | INFO     | executing command: cat /etc/os-release
[2025-10-07 15:21:34] 2025-10-07 19:20:55,043 | INFO     | cat /etc/os-release:
[2025-10-07 15:21:34] NAME="CentOS Linux"
[2025-10-07 15:21:34] VERSION="7 (Core)"
[2025-10-07 15:21:34] ID="centos"
[2025-10-07 15:21:34] ID_LIKE="rhel fedora"
[2025-10-07 15:21:34] VERSION_ID="7"
[2025-10-07 15:21:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 15:21:34] ANSI_COLOR="0;31"
[2025-10-07 15:21:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 15:21:34] HOME_URL="https://www.centos.org/"
[2025-10-07 15:21:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 15:21:34] 
[2025-10-07 15:21:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 15:21:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 15:21:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 15:21:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 15:21:34] 
[2025-10-07 15:21:34] 2025-10-07 19:20:55,043 | INFO     | ***************************************
[2025-10-07 15:21:34] 2025-10-07 19:20:55,548 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-07 15:21:34] 2025-10-07 19:20:55,579 | INFO     | sufficient remaining disk space (172613435392 B)
[2025-10-07 15:21:34] 2025-10-07 19:20:55,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 15:21:34] 2025-10-07 19:20:55,580 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 15:21:34] 2025-10-07 19:20:55,580 | INFO     | update_server=False
[2025-10-07 15:21:34] 2025-10-07 19:20:55,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 15:21:34] 2025-10-07 19:20:55,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 15:21:34] 2025-10-07 19:20:55,580 | INFO     | aborting loop
[2025-10-07 15:21:34] 2025-10-07 19:20:56,100 | INFO     | all data control threads have been joined
[2025-10-07 15:21:34] 2025-10-07 19:20:56,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 15:21:34] 2025-10-07 19:20:56,586 | INFO     | [job] retrieve thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:56,586 | INFO     | [job] job monitor thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:56,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:56,612 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:56,672 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 15:21:34] 2025-10-07 19:20:56,798 | INFO     | all job control threads have been joined
[2025-10-07 15:21:34] 2025-10-07 19:20:57,055 | INFO     | all payload control threads have been joined
[2025-10-07 15:21:34] 2025-10-07 19:20:57,106 | INFO     | [data] control thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:57,331 | INFO     | [payload] failed_post thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:57,561 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:57,582 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:57,804 | INFO     | [job] control thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:57,819 | INFO     | [payload] validate_post thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:57,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 15:21:34] 2025-10-07 19:20:58,000 | INFO     | [data] copytool_in thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:58,050 | INFO     | [job] validate thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:58,061 | INFO     | [payload] control thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:58,678 | INFO     | [data] copytool_out thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:20:58,887 | INFO     | [job] queue monitor thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:21:00,566 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 15:21:34] 2025-10-07 19:21:23,868 | INFO     | 4541s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-07 15:21:34] 2025-10-07 19:21:25,468 | INFO     | PID=1442682 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 15:21:34] 2025-10-07 19:21:25,468 | INFO     | .. there are 27 such processes running
[2025-10-07 15:21:34] 2025-10-07 19:21:25,468 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 15:21:34] 2025-10-07 19:21:25,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 15:21:34] 2025-10-07 19:21:25,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 15:21:34] 2025-10-07 19:21:26,832 | INFO     | [monitor] cgroup control has ended
[2025-10-07 15:21:34] 2025-10-07 19:21:28,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139769526216512)>', '<ExcThread(monitor, started 139769254221568)>']
[2025-10-07 15:21:34] 2025-10-07 19:21:28,486 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 15:21:34] 2025-10-07 19:21:28,486 | INFO     | [monitor] control thread has ended
[2025-10-07 15:21:34] 2025-10-07 19:21:33,129 | INFO     | all workflow threads have been joined
[2025-10-07 15:21:34] 2025-10-07 19:21:33,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 15:21:34] 2025-10-07 19:21:33,129 | INFO     | traces error code: 0
[2025-10-07 15:21:34] 2025-10-07 19:21:33,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 15:21:34] 2025-10-07 19:21:33,487 [wrapper] ==== pilot stdout END ====
[2025-10-07 15:21:34] 2025-10-07 19:21:33,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 15:21:34] 2025-10-07 19:21:33,515 [wrapper] pilotpid: 1442682
[2025-10-07 15:21:34] 2025-10-07 19:21:33,525 [wrapper] Pilot exit status: 0
[2025-10-07 15:21:34] 2025-10-07 19:21:33,630 [wrapper] pandaids: 6834445336
[2025-10-07 15:21:34] 2025-10-07 19:21:33,748 [wrapper] cleanup supervisor_pilot 1926301 1442683
[2025-10-07 15:21:34] 2025-10-07 19:21:33,754 [wrapper] Test setup, not cleaning
[2025-10-07 15:21:34] 2025-10-07 19:21:33,757 [wrapper] apfmon messages muted
[2025-10-07 15:21:34] 2025-10-07 19:21:33,762 [wrapper] ==== wrapper stdout END ====
[2025-10-07 15:21:34] 2025-10-07 19:21:33,767 [wrapper] ==== wrapper stderr END ====
[2025-10-07 15:21:34]  *** Error codes and diagnostics ***
[2025-10-07 15:21:34]     "exeErrorCode": 0,
[2025-10-07 15:21:34]     "exeErrorDiag": "",
[2025-10-07 15:21:34]     "pilotErrorCode": 0,
[2025-10-07 15:21:34]     "pilotErrorDiag": "",
[2025-10-07 15:21:34]  *** Listing of results directory ***
[2025-10-07 15:21:34] total 383840
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas    552446 Oct  7 07:55 pilot3.tar.gz
[2025-10-07 15:21:34] -rwx------. 1 boincer umatlas     36292 Oct  7 08:30 runpilot2-wrapper.sh
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas      5112 Oct  7 08:30 queuedata.json
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas       100 Oct  7 14:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 15:21:34] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 14:04 run_atlas
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas       105 Oct  7 14:04 job.xml
[2025-10-07 15:21:34] -rw-r--r--. 2 boincer umatlas 212829083 Oct  7 14:04 EVNT.46376901._004132.pool.root.1
[2025-10-07 15:21:34] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 14:04 start_atlas.sh
[2025-10-07 15:21:34] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 14:04 shared
[2025-10-07 15:21:34] -rw-r--r--. 2 boincer umatlas    565608 Oct  7 14:04 input.tar.gz
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas         0 Oct  7 14:04 boinc_lockfile
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas      2521 Oct  7 14:04 pandaJob.out
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas    977520 Oct  7 14:05 agis_schedconf.cvmfs.json
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas   1560401 Oct  7 14:05 agis_ddmendpoints.agis.ALL.json
[2025-10-07 15:21:34] drwx------. 4 boincer umatlas      4096 Oct  7 14:05 pilot3
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas      7173 Oct  7 15:18 init_data.xml
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas 174446439 Oct  7 15:20 HITS.46376905._134411.pool.root.1
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas       529 Oct  7 15:20 boinc_task_state.xml
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas        95 Oct  7 15:20 pilot_heartbeat.json
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas      1044 Oct  7 15:20 memory_monitor_summary.json
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas    312557 Oct  7 15:20 log.46376905._134411.job.log.tgz.1
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas      7805 Oct  7 15:20 heartbeat.json
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 15:21 boinc_mmap_file
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas      4940 Oct  7 15:21 pilotlog.txt
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas    631907 Oct  7 15:21 log.46376905._134411.job.log.1
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas        27 Oct  7 15:21 wrapper_checkpoint.txt
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas       357 Oct  7 15:21 output.list
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas       620 Oct  7 15:21 runtime_log
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas    962560 Oct  7 15:21 result.tar.gz
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas      8703 Oct  7 15:21 runtime_log.err
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas       657 Oct  7 15:21 MD1KDmk0LQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmd4WNDmTXknAn.diag
[2025-10-07 15:21:34] -rw-r--r--. 1 boincer umatlas     22106 Oct  7 15:21 stderr.txt
[2025-10-07 15:21:34] HITS file was successfully produced:
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas 174446439 Oct  7 15:20 shared/HITS.pool.root.1
[2025-10-07 15:21:34]  *** Contents of shared directory: ***
[2025-10-07 15:21:34] total 379720
[2025-10-07 15:21:34] -rw-r--r--. 2 boincer umatlas 212829083 Oct  7 14:04 ATLAS.root_0
[2025-10-07 15:21:34] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 14:04 start_atlas.sh
[2025-10-07 15:21:34] -rw-r--r--. 2 boincer umatlas    565608 Oct  7 14:04 input.tar.gz
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas 174446439 Oct  7 15:20 HITS.pool.root.1
[2025-10-07 15:21:34] -rw-------. 1 boincer umatlas    962560 Oct  7 15:21 result.tar.gz
15:21:35 (1436471): run_atlas exited; CPU time 19394.219062
15:21:35 (1436471): called boinc_finish(0)

</stderr_txt>
]]>

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