Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:57:04 (705217): wrapper (7.7.26015): starting
22:57:04 (705217): wrapper: running run_atlas (--nthreads 4)
[2025-10-07 22:57:04] Arguments: --nthreads 4
[2025-10-07 22:57:04] Threads: 4
[2025-10-07 22:57:04] Checking for CVMFS
[2025-10-07 22:57:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 22:57:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 22:57:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 22:57:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 22:57:04] 2.9.2.0 4712 1326 89552 151446 1 57 35868337 36864001 0 130560 0 1356390 99.994 40067 1317 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-07 22:57:04] CVMFS is ok
[2025-10-07 22:57:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 22:57:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 22:57:04] Further information can be found at the LHC@home message board.
[2025-10-07 22:57:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 22:57:04] Checking for apptainer binary...
[2025-10-07 22:57:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 22:57:04] Running /usr/bin/apptainer --version
[2025-10-07 22:57:04] apptainer version 1.4.1-1.1
[2025-10-07 22:57:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 22:57:05] thA365
[2025-10-07 22:57:05] apptainer works
[2025-10-07 22:57:05] Set ATHENA_PROC_NUMBER=4
[2025-10-07 22:57:05] Set ATHENA_CORE_NUMBER=4
[2025-10-07 22:57:05] Starting ATLAS job with PandaID=6833425967
[2025-10-07 22:57:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 00:01:23]  *** The last 200 lines of the pilot log: ***
[2025-10-08 00:01:23] 2025-10-07 22:00:24,987 | INFO     | monitor loop #294: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:24,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:25,778 | INFO     | time since job start (3792s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:27,488 | INFO     | monitor loop #295: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:27,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:27,783 | INFO     | time since job start (3794s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:29,788 | INFO     | time since job start (3796s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:29,991 | INFO     | monitor loop #296: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:29,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:31,794 | INFO     | time since job start (3798s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:32,495 | INFO     | monitor loop #297: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:32,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:33,800 | INFO     | time since job start (3800s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:34,998 | INFO     | monitor loop #298: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:34,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:35,805 | INFO     | time since job start (3802s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:37,501 | INFO     | monitor loop #299: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:37,501 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:37,812 | INFO     | time since job start (3804s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:39,818 | INFO     | time since job start (3806s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:40,004 | INFO     | monitor loop #300: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:40,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:40,900 | INFO     | PID=708998 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 00:01:23] 2025-10-07 22:00:41,901 | INFO     | time since job start (3808s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:42,508 | INFO     | monitor loop #301: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:42,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:43,906 | INFO     | time since job start (3810s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:45,010 | INFO     | monitor loop #302: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:45,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:45,911 | INFO     | time since job start (3812s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:47,513 | INFO     | monitor loop #303: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:47,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:47,916 | INFO     | time since job start (3814s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:49,921 | INFO     | time since job start (3816s) is within the limit (172800.0s)
[2025-10-08 00:01:23] 2025-10-07 22:00:50,016 | INFO     | monitor loop #304: job 0:6833425967 is in state 'finished'
[2025-10-08 00:01:23] 2025-10-07 22:00:50,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 00:01:23] 2025-10-07 22:00:51,006 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 00:01:23] 2025-10-07 22:00:51,008 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3561.6605624999997
[2025-10-08 00:01:23] 2025-10-07 22:00:51,009 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6833425967/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 00:01:23] 2025-10-07 22:00:51,009 | INFO     | extracted standard info from prmon json
[2025-10-08 00:01:23] 2025-10-07 22:00:51,009 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 00:01:23] 2025-10-07 22:00:51,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 00:01:23] 2025-10-07 22:00:51,010 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 00:01:23] 2025-10-07 22:00:51,010 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 00:01:23] 2025-10-07 22:00:51,010 | INFO     | fitting pss+swap vs Time
[2025-10-08 00:01:23] 2025-10-07 22:00:51,010 | INFO     | sum of square deviations: 51573060.0
[2025-10-08 00:01:23] 2025-10-07 22:00:51,010 | INFO     | sum of deviations: -5965434427.000001
[2025-10-08 00:01:23] 2025-10-07 22:00:51,010 | INFO     | mean x: 1759872608.0
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | mean y: 2465808.963636364
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | -- intersect: 203566199333.74335
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | intersect: 203566199333.74335
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | chi2: 0.11180419362450232
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | -- intersect: 203566199333.74335
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | current memory leak: -115.67 B/s (using 55 data points, chi2=0.11)
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | could have reported an average CPU frequency of 3629 MHz (6 samples)
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | ..............................
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . Timing measurements:
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . get job = 0 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . initial setup = 1 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . payload setup = 4 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . stage-in = 0 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . payload execution = 3762 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . stage-out = 0 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | . log creation = 0 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,011 | INFO     | ..............................
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | 
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | job summary report
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | --------------------------------------------------
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | PanDA job id: 6833425967
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | task id: 46376905
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | errors: (none)
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | pilot state: finished 
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | transexitcode: 0
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | exeerrorcode: 0
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | exeerrordiag: 
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | exitcode: 0
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | exitmsg: OK
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | cpuconsumptiontime: 14169 s
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | nevents: 400
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | neventsw: 0
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | pid: 715634
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | pgrp: 715634
[2025-10-08 00:01:23] 2025-10-07 22:00:51,264 | INFO     | corecount: 4
[2025-10-08 00:01:23] 2025-10-07 22:00:51,265 | INFO     | event service: False
[2025-10-08 00:01:23] 2025-10-07 22:00:51,265 | INFO     | sizes: {0: 2348772, 3: 2349034, 10: 2349062, 3770: 2374986, 3771: 2384046, 3803: 2384184}
[2025-10-08 00:01:23] 2025-10-07 22:00:51,265 | INFO     | --------------------------------------------------
[2025-10-08 00:01:23] 2025-10-07 22:00:51,265 | INFO     | 
[2025-10-08 00:01:23] 2025-10-07 22:00:51,265 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | job 6833425967 has completed (purged errors)
[2025-10-08 00:01:23] 2025-10-07 22:00:51,287 | INFO     | overall cleanup function is called
[2025-10-08 00:01:23] 2025-10-07 22:00:52,289 | INFO     | --- collectZombieJob: --- 10, [715634]
[2025-10-08 00:01:23] 2025-10-07 22:00:52,289 | INFO     | zombie collector waiting for pid 715634
[2025-10-08 00:01:23] 2025-10-07 22:00:52,289 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 00:01:23] 2025-10-07 22:00:52,289 | INFO     | collected zombie processes
[2025-10-08 00:01:23] 2025-10-07 22:00:52,289 | INFO     | will attempt to kill all subprocesses of pid=715634
[2025-10-08 00:01:23] 2025-10-07 22:00:52,346 | INFO     | process IDs to be killed: [715634] (in reverse order)
[2025-10-08 00:01:23] 2025-10-07 22:00:52,382 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 00:01:23] 2025-10-07 22:00:52,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 00:01:23] 2025-10-07 22:00:52,384 | INFO     | did not find any defunct processes belonging to 715634
[2025-10-08 00:01:23] 2025-10-07 22:00:52,386 | INFO     | did not find any defunct processes belonging to 715634
[2025-10-08 00:01:23] 2025-10-07 22:00:52,386 | INFO     | ready for new job
[2025-10-08 00:01:23] 2025-10-07 22:00:52,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 00:01:23] 2025-10-07 22:00:52,387 | INFO     | ***************************************
[2025-10-08 00:01:23] 2025-10-07 22:00:52,387 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 00:01:23] 2025-10-07 22:00:52,387 | INFO     | ***************************************
[2025-10-08 00:01:23] 2025-10-07 22:00:52,387 | INFO     | 
[2025-10-08 00:01:23] 2025-10-07 22:00:52,387 | INFO     | architecture information:
[2025-10-08 00:01:23] 2025-10-07 22:00:52,388 | INFO     | executing command: cat /etc/os-release
[2025-10-08 00:01:23] 2025-10-07 22:00:52,400 | INFO     | cat /etc/os-release:
[2025-10-08 00:01:23] NAME="CentOS Linux"
[2025-10-08 00:01:23] VERSION="7 (Core)"
[2025-10-08 00:01:23] ID="centos"
[2025-10-08 00:01:23] ID_LIKE="rhel fedora"
[2025-10-08 00:01:23] VERSION_ID="7"
[2025-10-08 00:01:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 00:01:23] ANSI_COLOR="0;31"
[2025-10-08 00:01:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 00:01:23] HOME_URL="https://www.centos.org/"
[2025-10-08 00:01:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 00:01:23] 
[2025-10-08 00:01:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 00:01:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 00:01:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 00:01:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 00:01:23] 
[2025-10-08 00:01:23] 2025-10-07 22:00:52,401 | INFO     | ***************************************
[2025-10-08 00:01:23] 2025-10-07 22:00:52,903 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 00:01:23] 2025-10-07 22:00:52,918 | INFO     | sufficient remaining disk space (13248757760 B)
[2025-10-08 00:01:23] 2025-10-07 22:00:52,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 00:01:23] 2025-10-07 22:00:52,918 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 00:01:23] 2025-10-07 22:00:52,919 | INFO     | update_server=False
[2025-10-08 00:01:23] 2025-10-07 22:00:52,919 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 00:01:23] 2025-10-07 22:00:52,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 00:01:23] 2025-10-07 22:00:53,497 | INFO     | all payload control threads have been joined
[2025-10-08 00:01:23] 2025-10-07 22:00:53,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 00:01:23] 2025-10-07 22:00:53,530 | INFO     | aborting loop
[2025-10-08 00:01:23] 2025-10-07 22:00:53,548 | INFO     | all data control threads have been joined
[2025-10-08 00:01:23] 2025-10-07 22:00:53,924 | INFO     | [job] retrieve thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:53,924 | INFO     | [job] queue monitor thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:53,998 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:54,036 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:54,122 | INFO     | [payload] failed_post thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:54,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 00:01:23] 2025-10-07 22:00:54,396 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:54,502 | INFO     | [payload] control thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:54,535 | INFO     | [job] job monitor thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:54,554 | INFO     | [data] control thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:54,608 | INFO     | all job control threads have been joined
[2025-10-08 00:01:23] 2025-10-07 22:00:54,718 | INFO     | [data] copytool_in thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:55,250 | INFO     | [payload] validate_post thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:55,284 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:55,382 | INFO     | [job] validate thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:55,613 | INFO     | [job] control thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:56,197 | INFO     | [data] copytool_out thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:00:56,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 00:01:23] 2025-10-07 22:01:00,224 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 00:01:23] 2025-10-07 22:01:17,052 | INFO     | [monitor] cgroup control has ended
[2025-10-08 00:01:23] 2025-10-07 22:01:17,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140500572886848)>', '<ExcThread(monitor, started 140499184776960)>']
[2025-10-08 00:01:23] 2025-10-07 22:01:22,376 | INFO     | all workflow threads have been joined
[2025-10-08 00:01:23] 2025-10-07 22:01:22,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 00:01:23] 2025-10-07 22:01:22,377 | INFO     | traces error code: 0
[2025-10-08 00:01:23] 2025-10-07 22:01:22,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 00:01:23] 2025-10-07 22:01:23,010 | INFO     | PID=708998 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 00:01:23] 2025-10-07 22:01:23,010 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 00:01:23] 2025-10-07 22:01:23,010 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 00:01:23] 2025-10-07 22:01:23,011 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 00:01:23] 2025-10-07 22:01:23,011 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 00:01:23] 2025-10-07 22:01:23,011 | CRITICAL | thread 'MainThread' is not alive
[2025-10-08 00:01:23] 2025-10-07 22:01:23,011 | INFO     | [monitor] control thread has ended
[2025-10-08 00:01:23] 2025-10-07 22:01:23,080 [wrapper] ==== pilot stdout END ====
[2025-10-08 00:01:23] 2025-10-07 22:01:23,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 00:01:23] 2025-10-07 22:01:23,087 [wrapper] pilotpid: 708998
[2025-10-08 00:01:23] 2025-10-07 22:01:23,092 [wrapper] Pilot exit status: 0
[2025-10-08 00:01:23] 2025-10-07 22:01:23,105 [wrapper] pandaids: 6833425967
[2025-10-08 00:01:23] 2025-10-07 22:01:23,131 [wrapper] cleanup supervisor_pilot  730560 708999
[2025-10-08 00:01:23] 2025-10-07 22:01:23,134 [wrapper] Test setup, not cleaning
[2025-10-08 00:01:23] 2025-10-07 22:01:23,138 [wrapper] apfmon messages muted
[2025-10-08 00:01:23] 2025-10-07 22:01:23,142 [wrapper] ==== wrapper stdout END ====
[2025-10-08 00:01:23] 2025-10-07 22:01:23,145 [wrapper] ==== wrapper stderr END ====
[2025-10-08 00:01:23]  *** Error codes and diagnostics ***
[2025-10-08 00:01:23]     "exeErrorCode": 0,
[2025-10-08 00:01:23]     "exeErrorDiag": "",
[2025-10-08 00:01:23]     "pilotErrorCode": 0,
[2025-10-08 00:01:23]     "pilotErrorDiag": "",
[2025-10-08 00:01:23]  *** Listing of results directory ***
[2025-10-08 00:01:23] total 384840
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc      5112 Oct  7 10:52 queuedata.json
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc    552446 Oct  7 10:52 pilot3.tar.gz
[2025-10-08 00:01:23] -rwx------ 1 boinc boinc     36292 Oct  7 10:53 runpilot2-wrapper.sh
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc       100 Oct  7 22:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 00:01:23] -rwxr-xr-x 1 boinc boinc      7986 Oct  7 22:57 run_atlas
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc       105 Oct  7 22:57 job.xml
[2025-10-08 00:01:23] -rw-r--r-- 2 boinc boinc 213517714 Oct  7 22:57 EVNT.46376901._004892.pool.root.1
[2025-10-08 00:01:23] drwxrwx--x 2 boinc boinc      4096 Oct  7 22:57 shared
[2025-10-08 00:01:23] -rw-r--r-- 2 boinc boinc    565605 Oct  7 22:57 input.tar.gz
[2025-10-08 00:01:23] -rw-r--r-- 2 boinc boinc     15120 Oct  7 22:57 start_atlas.sh
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc         0 Oct  7 22:57 boinc_setup_complete
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc      6365 Oct  7 22:57 init_data.xml
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc         0 Oct  7 22:57 boinc_lockfile
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc      2520 Oct  7 22:57 pandaJob.out
[2025-10-08 00:01:23] -rw------- 1 boinc boinc    979856 Oct  7 22:57 agis_schedconf.cvmfs.json
[2025-10-08 00:01:23] -rw------- 1 boinc boinc   1560401 Oct  7 22:57 agis_ddmendpoints.agis.ALL.json
[2025-10-08 00:01:23] drwx------ 4 boinc boinc      4096 Oct  7 22:57 pilot3
[2025-10-08 00:01:23] -rw------- 1 boinc boinc 174988693 Oct  7 23:59 HITS.46376905._131470.pool.root.1
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc       529 Oct  8 00:00 boinc_task_state.xml
[2025-10-08 00:01:23] -rw------- 1 boinc boinc      1058 Oct  8 00:00 memory_monitor_summary.json
[2025-10-08 00:01:23] -rw------- 1 boinc boinc    269912 Oct  8 00:00 log.46376905._131470.job.log.tgz.1
[2025-10-08 00:01:23] -rw------- 1 boinc boinc        95 Oct  8 00:00 pilot_heartbeat.json
[2025-10-08 00:01:23] -rw------- 1 boinc boinc      7800 Oct  8 00:00 heartbeat.json
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc        27 Oct  8 00:01 wrapper_checkpoint.txt
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc      8192 Oct  8 00:01 boinc_mmap_file
[2025-10-08 00:01:23] -rw------- 1 boinc boinc       816 Oct  8 00:01 pilotlog.txt
[2025-10-08 00:01:23] -rw------- 1 boinc boinc    569967 Oct  8 00:01 log.46376905._131470.job.log.1
[2025-10-08 00:01:23] -rw------- 1 boinc boinc       357 Oct  8 00:01 output.list
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc       620 Oct  8 00:01 runtime_log
[2025-10-08 00:01:23] -rw------- 1 boinc boinc    860160 Oct  8 00:01 result.tar.gz
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc      8777 Oct  8 00:01 runtime_log.err
[2025-10-08 00:01:23] -rw------- 1 boinc boinc       663 Oct  8 00:01 UMkNDmEdIQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWNLMDmDJWACn.diag
[2025-10-08 00:01:23] -rw-r--r-- 1 boinc boinc     22271 Oct  8 00:01 stderr.txt
[2025-10-08 00:01:23] HITS file was successfully produced:
[2025-10-08 00:01:23] -rw------- 1 boinc boinc 174988693 Oct  7 23:59 shared/HITS.pool.root.1
[2025-10-08 00:01:23]  *** Contents of shared directory: ***
[2025-10-08 00:01:23] total 380824
[2025-10-08 00:01:23] -rw-r--r-- 2 boinc boinc 213517714 Oct  7 22:57 ATLAS.root_0
[2025-10-08 00:01:23] -rw-r--r-- 2 boinc boinc    565605 Oct  7 22:57 input.tar.gz
[2025-10-08 00:01:23] -rw-r--r-- 2 boinc boinc     15120 Oct  7 22:57 start_atlas.sh
[2025-10-08 00:01:23] -rw------- 1 boinc boinc 174988693 Oct  7 23:59 HITS.pool.root.1
[2025-10-08 00:01:23] -rw------- 1 boinc boinc    860160 Oct  8 00:01 result.tar.gz
00:01:24 (705217): run_atlas exited; CPU time 14169.693051
00:01:24 (705217): called boinc_finish(0)

</stderr_txt>
]]>

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