Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:04:44 (1272728): wrapper (7.7.26015): starting
14:04:44 (1272728): wrapper: running run_atlas (--nthreads 9)
[2025-10-07 14:04:44] Arguments: --nthreads 9
[2025-10-07 14:04:44] Threads: 9
[2025-10-07 14:04:44] Checking for CVMFS
[2025-10-07 14:04:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 14:04:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 14:04:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 14:04:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 14:04:45] 2.13.2.0 3269412 28863 271908 151442 0 299 40878272 40960001 27134 16776704 0 348630923 99.821 161765472 36602 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-07 14:04:45] CVMFS is ok
[2025-10-07 14:04:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 14:04:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 14:04:45] Further information can be found at the LHC@home message board.
[2025-10-07 14:04:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 14:04:45] Checking for apptainer binary...
[2025-10-07 14:04:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 14:04:45] Running /usr/bin/apptainer --version
[2025-10-07 14:04:45] apptainer version 1.4.2-1.el9
[2025-10-07 14:04:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 14:04:45] c8-16-2.aglt2.org
[2025-10-07 14:04:45] apptainer works
[2025-10-07 14:04:45] Set ATHENA_PROC_NUMBER=9
[2025-10-07 14:04:45] Set ATHENA_CORE_NUMBER=9
[2025-10-07 14:04:45] Starting ATLAS job with PandaID=6833429866
[2025-10-07 14:04:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 14:54:35]  *** The last 200 lines of the pilot log: ***
[2025-10-07 14:54:35] 2025-10-07 18:53:47,141 | INFO     | transferring file log.46376905._133013.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6833429866/log.46376905._133013.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-07 14:54:35] 2025-10-07 18:53:47,142 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6833429866/log.46376905._133013.job.log.tgz.1 /tmp/boinchome/slots/3/log.46376905._133013.job
[2025-10-07 14:54:35] 2025-10-07 18:53:47,178 | INFO     | adding to output.list: log.46376905._133013.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/64/log.46376905._133013.job.log.tg
[2025-10-07 14:54:35] 2025-10-07 18:53:47,179 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 14:54:35] 2025-10-07 18:53:47,179 | INFO     | summary of transferred files:
[2025-10-07 14:54:35] 2025-10-07 18:53:47,179 | INFO     |  -- lfn=log.46376905._133013.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 14:54:35] 2025-10-07 18:53:47,179 | INFO     | stage-out finished correctly
[2025-10-07 14:54:35] 2025-10-07 18:53:47,757 | INFO     | time since job start (2925s) is within the limit (172800.0s)
[2025-10-07 14:54:35] 2025-10-07 18:53:49,163 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 14:54:35] 2025-10-07 18:53:49,482 | WARNING  | process 1285796 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 14:54:35] 2025-10-07 18:53:49,482 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6833429866/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 14:54:35] 2025-10-07 18:53:49,778 | INFO     | time since job start (2927s) is within the limit (172800.0s)
[2025-10-07 14:54:35] 2025-10-07 18:53:50,211 | INFO     | number of running child processes to parent process 1285796: 1
[2025-10-07 14:54:35] 2025-10-07 18:53:50,212 | INFO     | maximum number of monitored processes: 6
[2025-10-07 14:54:35] 2025-10-07 18:53:50,845 | INFO     | job 6833429866 has state=finished
[2025-10-07 14:54:35] 2025-10-07 18:53:50,845 | INFO     | preparing for final server update for job 6833429866 in state='finished'
[2025-10-07 14:54:35] 2025-10-07 18:53:50,846 | INFO     | this job has now completed (state=finished)
[2025-10-07 14:54:35] 2025-10-07 18:53:50,846 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 14:54:35] 2025-10-07 18:53:50,846 | INFO     | log transfer has been attempted: DONE
[2025-10-07 14:54:35] 2025-10-07 18:53:50,846 | INFO     | job 6833429866 has finished - writing final server update
[2025-10-07 14:54:35] 2025-10-07 18:53:50,846 | INFO     | total number of processed events: 400 (read)
[2025-10-07 14:54:35] 2025-10-07 18:53:50,855 | INFO     | executing command: lscpu
[2025-10-07 14:54:35] 2025-10-07 18:53:50,946 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 14:54:35] 2025-10-07 18:53:51,790 | INFO     | time since job start (2929s) is within the limit (172800.0s)
[2025-10-07 14:54:35] 2025-10-07 18:53:52,717 | INFO     | monitor loop #194: job 0:6833429866 is in state 'finished'
[2025-10-07 14:54:35] 2025-10-07 18:53:52,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:54:35] 2025-10-07 18:53:53,798 | INFO     | time since job start (2931s) is within the limit (172800.0s)
[2025-10-07 14:54:35] 2025-10-07 18:53:55,222 | INFO     | monitor loop #195: job 0:6833429866 is in state 'finished'
[2025-10-07 14:54:35] 2025-10-07 18:53:55,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:54:35] 2025-10-07 18:53:55,805 | INFO     | time since job start (2933s) is within the limit (172800.0s)
[2025-10-07 14:54:35] 2025-10-07 18:53:57,727 | INFO     | monitor loop #196: job 0:6833429866 is in state 'finished'
[2025-10-07 14:54:35] 2025-10-07 18:53:57,727 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:54:35] 2025-10-07 18:53:57,820 | INFO     | time since job start (2935s) is within the limit (172800.0s)
[2025-10-07 14:54:35] 2025-10-07 18:53:59,828 | INFO     | time since job start (2937s) is within the limit (172800.0s)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,230 | INFO     | monitor loop #197: job 0:6833429866 is in state 'finished'
[2025-10-07 14:54:35] 2025-10-07 18:54:00,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,244 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 14:54:35] 2025-10-07 18:54:00,262 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9871562499993
[2025-10-07 14:54:35] 2025-10-07 18:54:00,276 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6833429866/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,276 | INFO     | extracted standard info from prmon json
[2025-10-07 14:54:35] 2025-10-07 18:54:00,276 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 14:54:35] 2025-10-07 18:54:00,276 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 14:54:35] 2025-10-07 18:54:00,277 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 14:54:35] 2025-10-07 18:54:00,277 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | fitting pss+swap vs Time
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | sum of square deviations: 21358540.0
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | sum of deviations: -593081893.9999999
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | mean x: 1759861866.0
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | mean y: 2202673.7073170734
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | -- intersect: 48869878491.70114
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | intersect: 48869878491.70114
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | chi2: 0.02707106743515324
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | -- intersect: 48869878491.70114
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | current memory leak: -27.77 B/s (using 41 data points, chi2=0.03)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | could have reported an average CPU frequency of 3798 MHz (5 samples)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | ..............................
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | . Timing measurements:
[2025-10-07 14:54:35] 2025-10-07 18:54:00,278 | INFO     | . get job = 0 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,279 | INFO     | . initial setup = 2 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,279 | INFO     | . payload setup = 11 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,279 | INFO     | . stage-in = 0 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,279 | INFO     | . payload execution = 2891 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,279 | INFO     | . stage-out = 1 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,279 | INFO     | . log creation = 0 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,279 | INFO     | ..............................
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | 
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | job summary report
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | --------------------------------------------------
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | PanDA job id: 6833429866
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | task id: 46376905
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | errors: (none)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | pilot state: finished 
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | transexitcode: 0
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | exeerrorcode: 0
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | exeerrordiag: 
[2025-10-07 14:54:35] 2025-10-07 18:54:00,584 | INFO     | exitcode: 0
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | exitmsg: OK
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | cpuconsumptiontime: 19803 s
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | nevents: 400
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | neventsw: 0
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | pid: 1285796
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | pgrp: 1285796
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | corecount: 9
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | event service: False
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | sizes: {0: 2348820, 10: 2349082, 11: 2349110, 2906: 2374485, 2907: 2383483, 2909: 2383539, 2920: 2383893}
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | --------------------------------------------------
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | 
[2025-10-07 14:54:35] 2025-10-07 18:54:00,585 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-07 14:54:35] 2025-10-07 18:54:00,614 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,615 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 14:54:35] 2025-10-07 18:54:00,616 | INFO     | job 6833429866 has completed (purged errors)
[2025-10-07 14:54:35] 2025-10-07 18:54:00,616 | INFO     | overall cleanup function is called
[2025-10-07 14:54:35] 2025-10-07 18:54:01,625 | INFO     | --- collectZombieJob: --- 10, [1285796]
[2025-10-07 14:54:35] 2025-10-07 18:54:01,625 | INFO     | zombie collector waiting for pid 1285796
[2025-10-07 14:54:35] 2025-10-07 18:54:01,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 14:54:35] 2025-10-07 18:54:01,625 | INFO     | collected zombie processes
[2025-10-07 14:54:35] 2025-10-07 18:54:01,625 | INFO     | will attempt to kill all subprocesses of pid=1285796
[2025-10-07 14:54:35] 2025-10-07 18:54:02,500 | INFO     | process IDs to be killed: [1285796] (in reverse order)
[2025-10-07 14:54:35] 2025-10-07 18:54:02,805 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 14:54:35] 2025-10-07 18:54:02,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 14:54:35] 2025-10-07 18:54:02,839 | INFO     | did not find any defunct processes belonging to 1285796
[2025-10-07 14:54:35] 2025-10-07 18:54:02,883 | INFO     | did not find any defunct processes belonging to 1285796
[2025-10-07 14:54:35] 2025-10-07 18:54:02,883 | INFO     | ready for new job
[2025-10-07 14:54:35] 2025-10-07 18:54:02,883 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 14:54:35] 2025-10-07 18:54:02,885 | INFO     | ***************************************
[2025-10-07 14:54:35] 2025-10-07 18:54:02,885 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 14:54:35] 2025-10-07 18:54:02,885 | INFO     | ***************************************
[2025-10-07 14:54:35] 2025-10-07 18:54:02,885 | INFO     | 
[2025-10-07 14:54:35] 2025-10-07 18:54:02,903 | INFO     | architecture information:
[2025-10-07 14:54:35] 2025-10-07 18:54:02,904 | INFO     | executing command: cat /etc/os-release
[2025-10-07 14:54:35] 2025-10-07 18:54:02,946 | INFO     | cat /etc/os-release:
[2025-10-07 14:54:35] NAME="CentOS Linux"
[2025-10-07 14:54:35] VERSION="7 (Core)"
[2025-10-07 14:54:35] ID="centos"
[2025-10-07 14:54:35] ID_LIKE="rhel fedora"
[2025-10-07 14:54:35] VERSION_ID="7"
[2025-10-07 14:54:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 14:54:35] ANSI_COLOR="0;31"
[2025-10-07 14:54:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 14:54:35] HOME_URL="https://www.centos.org/"
[2025-10-07 14:54:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 14:54:35] 
[2025-10-07 14:54:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 14:54:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 14:54:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 14:54:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 14:54:35] 
[2025-10-07 14:54:35] 2025-10-07 18:54:02,946 | INFO     | ***************************************
[2025-10-07 14:54:35] 2025-10-07 18:54:03,450 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-07 14:54:35] 2025-10-07 18:54:03,469 | INFO     | sufficient remaining disk space (166557908992 B)
[2025-10-07 14:54:35] 2025-10-07 18:54:03,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 14:54:35] 2025-10-07 18:54:03,470 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 14:54:35] 2025-10-07 18:54:03,470 | INFO     | update_server=False
[2025-10-07 14:54:35] 2025-10-07 18:54:03,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 14:54:35] 2025-10-07 18:54:03,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 14:54:35] 2025-10-07 18:54:03,740 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 14:54:35] 2025-10-07 18:54:03,740 | INFO     | aborting loop
[2025-10-07 14:54:35] 2025-10-07 18:54:04,288 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 14:54:35] 2025-10-07 18:54:04,327 | INFO     | all job control threads have been joined
[2025-10-07 14:54:35] 2025-10-07 18:54:04,471 | INFO     | all data control threads have been joined
[2025-10-07 14:54:35] 2025-10-07 18:54:04,479 | INFO     | [payload] validate_post thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:04,483 | INFO     | [job] retrieve thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:04,607 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:04,607 | INFO     | [job] validate thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:04,639 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:04,736 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:04,745 | INFO     | [job] job monitor thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:04,932 | INFO     | all payload control threads have been joined
[2025-10-07 14:54:35] 2025-10-07 18:54:05,212 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:05,332 | INFO     | [job] control thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:05,344 | INFO     | [data] copytool_in thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:05,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 14:54:35] 2025-10-07 18:54:05,477 | INFO     | [data] copytool_out thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:05,488 | INFO     | [data] control thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:05,937 | INFO     | [payload] control thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:05,988 | INFO     | [payload] failed_post thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:06,364 | INFO     | [job] queue monitor thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:07,097 | INFO     | [monitor] cgroup control has ended
[2025-10-07 14:54:35] 2025-10-07 18:54:08,301 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 14:54:35] 2025-10-07 18:54:10,027 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746363438912)>', '<ExcThread(monitor, started 139745703204608)>']
[2025-10-07 14:54:35] 2025-10-07 18:54:15,053 | INFO     | all workflow threads have been joined
[2025-10-07 14:54:35] 2025-10-07 18:54:15,053 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 14:54:35] 2025-10-07 18:54:15,053 | INFO     | traces error code: 0
[2025-10-07 14:54:35] 2025-10-07 18:54:15,054 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 14:54:35] 2025-10-07 18:54:34,938 | INFO     | PID=1277900 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 14:54:35] 2025-10-07 18:54:34,939 | INFO     | .. there are 37 such processes running
[2025-10-07 14:54:35] 2025-10-07 18:54:34,939 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 14:54:35] 2025-10-07 18:54:34,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 14:54:35] 2025-10-07 18:54:34,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 14:54:35] 2025-10-07 18:54:34,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 14:54:35] 2025-10-07 18:54:34,939 | INFO     | [monitor] control thread has ended
[2025-10-07 14:54:35] 2025-10-07 18:54:35,098 [wrapper] ==== pilot stdout END ====
[2025-10-07 14:54:35] 2025-10-07 18:54:35,115 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 14:54:35] 2025-10-07 18:54:35,143 [wrapper] pilotpid: 1277900
[2025-10-07 14:54:35] 2025-10-07 18:54:35,148 [wrapper] Pilot exit status: 0
[2025-10-07 14:54:35] 2025-10-07 18:54:35,181 [wrapper] pandaids: 6833429866
[2025-10-07 14:54:35] 2025-10-07 18:54:35,340 [wrapper] cleanup supervisor_pilot 1651866 1277901
[2025-10-07 14:54:35] 2025-10-07 18:54:35,343 [wrapper] Test setup, not cleaning
[2025-10-07 14:54:35] 2025-10-07 18:54:35,345 [wrapper] apfmon messages muted
[2025-10-07 14:54:35] 2025-10-07 18:54:35,348 [wrapper] ==== wrapper stdout END ====
[2025-10-07 14:54:35] 2025-10-07 18:54:35,349 [wrapper] ==== wrapper stderr END ====
[2025-10-07 14:54:35]  *** Error codes and diagnostics ***
[2025-10-07 14:54:35]     "exeErrorCode": 0,
[2025-10-07 14:54:35]     "exeErrorDiag": "",
[2025-10-07 14:54:35]     "pilotErrorCode": 0,
[2025-10-07 14:54:35]     "pilotErrorDiag": "",
[2025-10-07 14:54:35]  *** Listing of results directory ***
[2025-10-07 14:54:35] total 385280
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas    552446 Oct  7 06:41 pilot3.tar.gz
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas      5112 Oct  7 06:46 queuedata.json
[2025-10-07 14:54:35] -rwx------. 1 boincer umatlas     36292 Oct  7 06:51 runpilot2-wrapper.sh
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas       100 Oct  7 14:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 14:54:35] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 14:04 run_atlas
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas       105 Oct  7 14:04 job.xml
[2025-10-07 14:54:35] -rw-r--r--. 2 boincer umatlas 211375634 Oct  7 14:04 EVNT.46376901._004954.pool.root.1
[2025-10-07 14:54:35] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 14:04 start_atlas.sh
[2025-10-07 14:54:35] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 14:04 shared
[2025-10-07 14:54:35] -rw-r--r--. 2 boincer umatlas    565609 Oct  7 14:04 input.tar.gz
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas         0 Oct  7 14:04 boinc_lockfile
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas      2521 Oct  7 14:04 pandaJob.out
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas    977520 Oct  7 14:05 agis_schedconf.cvmfs.json
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas   1560401 Oct  7 14:05 agis_ddmendpoints.agis.ALL.json
[2025-10-07 14:54:35] drwx------. 4 boincer umatlas      4096 Oct  7 14:05 pilot3
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas      7163 Oct  7 14:48 init_data.xml
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas 177774342 Oct  7 14:53 HITS.46376905._133013.pool.root.1
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas       529 Oct  7 14:53 boinc_task_state.xml
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas      1030 Oct  7 14:53 memory_monitor_summary.json
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas    317842 Oct  7 14:53 log.46376905._133013.job.log.tgz.1
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas        95 Oct  7 14:53 pilot_heartbeat.json
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas      7768 Oct  7 14:54 heartbeat.json
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 14:54 boinc_mmap_file
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas        27 Oct  7 14:54 wrapper_checkpoint.txt
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas       823 Oct  7 14:54 pilotlog.txt
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas    429664 Oct  7 14:54 log.46376905._133013.job.log.1
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas       357 Oct  7 14:54 output.list
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas       620 Oct  7 14:54 runtime_log
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas    768000 Oct  7 14:54 result.tar.gz
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas       651 Oct  7 14:54 zgXKDmMTKQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpoWNDmndlwKo.diag
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas      8698 Oct  7 14:54 runtime_log.err
[2025-10-07 14:54:35] -rw-r--r--. 1 boincer umatlas     22501 Oct  7 14:54 stderr.txt
[2025-10-07 14:54:35] HITS file was successfully produced:
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas 177774342 Oct  7 14:53 shared/HITS.pool.root.1
[2025-10-07 14:54:35]  *** Contents of shared directory: ***
[2025-10-07 14:54:35] total 381360
[2025-10-07 14:54:35] -rw-r--r--. 2 boincer umatlas 211375634 Oct  7 14:04 ATLAS.root_0
[2025-10-07 14:54:35] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 14:04 start_atlas.sh
[2025-10-07 14:54:35] -rw-r--r--. 2 boincer umatlas    565609 Oct  7 14:04 input.tar.gz
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas 177774342 Oct  7 14:53 HITS.pool.root.1
[2025-10-07 14:54:35] -rw-------. 1 boincer umatlas    768000 Oct  7 14:54 result.tar.gz
14:54:37 (1272728): run_atlas exited; CPU time 19915.452255
14:54:37 (1272728): called boinc_finish(0)

</stderr_txt>
]]>

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