Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:34:56 (1426793): wrapper (7.7.26015): starting
03:34:56 (1426793): wrapper: running run_atlas (--nthreads 3)
[2025-10-08 03:34:56] Arguments: --nthreads 3
[2025-10-08 03:34:56] Threads: 3
[2025-10-08 03:34:56] Checking for CVMFS
[2025-10-08 03:34:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 03:34:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 03:34:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 03:34:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 03:34:56] 2.9.2.0 635695 2263 80720 151453 2 56 27610953 36864000 0 130560 0 2075450 99.992 76336 1018 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 03:34:56] CVMFS is ok
[2025-10-08 03:34:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 03:34:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 03:34:56] Further information can be found at the LHC@home message board.
[2025-10-08 03:34:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 03:34:56] Checking for apptainer binary...
[2025-10-08 03:34:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 03:34:56] Running /usr/bin/apptainer --version
[2025-10-08 03:34:56] apptainer version 1.4.1-1.1
[2025-10-08 03:34:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 03:34:56] magicA252
[2025-10-08 03:34:56] apptainer works
[2025-10-08 03:34:56] Set ATHENA_PROC_NUMBER=3
[2025-10-08 03:34:56] Set ATHENA_CORE_NUMBER=3
[2025-10-08 03:34:56] Starting ATLAS job with PandaID=6833428626
[2025-10-08 03:34:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 04:48:35]  *** The last 200 lines of the pilot log: ***
[2025-10-08 04:48:35] 2025-10-08 02:48:05,051 | INFO     | --- collectZombieJob: --- 10, [1436959]
[2025-10-08 04:48:35] 2025-10-08 02:48:05,051 | INFO     | zombie collector waiting for pid 1436959
[2025-10-08 04:48:35] 2025-10-08 02:48:05,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 04:48:35] 2025-10-08 02:48:05,051 | INFO     | collected zombie processes
[2025-10-08 04:48:35] 2025-10-08 02:48:05,051 | INFO     | will attempt to kill all subprocesses of pid=1436959
[2025-10-08 04:48:35] 2025-10-08 02:48:05,094 | INFO     | process IDs to be killed: [1436959] (in reverse order)
[2025-10-08 04:48:35] 2025-10-08 02:48:05,120 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 04:48:35] 2025-10-08 02:48:05,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 04:48:35] 2025-10-08 02:48:05,121 | INFO     | did not find any defunct processes belonging to 1436959
[2025-10-08 04:48:35] 2025-10-08 02:48:05,122 | INFO     | did not find any defunct processes belonging to 1436959
[2025-10-08 04:48:35] 2025-10-08 02:48:05,122 | INFO     | ready for new job
[2025-10-08 04:48:35] 2025-10-08 02:48:05,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 04:48:35] 2025-10-08 02:48:05,123 | INFO     | ***************************************
[2025-10-08 04:48:35] 2025-10-08 02:48:05,123 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 04:48:35] 2025-10-08 02:48:05,123 | INFO     | ***************************************
[2025-10-08 04:48:35] 2025-10-08 02:48:05,123 | INFO     | 
[2025-10-08 04:48:35] 2025-10-08 02:48:05,123 | INFO     | architecture information:
[2025-10-08 04:48:35] 2025-10-08 02:48:05,123 | INFO     | executing command: cat /etc/os-release
[2025-10-08 04:48:35] 2025-10-08 02:48:05,132 | INFO     | cat /etc/os-release:
[2025-10-08 04:48:35] NAME="CentOS Linux"
[2025-10-08 04:48:35] VERSION="7 (Core)"
[2025-10-08 04:48:35] ID="centos"
[2025-10-08 04:48:35] ID_LIKE="rhel fedora"
[2025-10-08 04:48:35] VERSION_ID="7"
[2025-10-08 04:48:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 04:48:35] ANSI_COLOR="0;31"
[2025-10-08 04:48:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 04:48:35] HOME_URL="https://www.centos.org/"
[2025-10-08 04:48:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 04:48:35] 
[2025-10-08 04:48:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 04:48:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 04:48:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 04:48:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 04:48:35] 
[2025-10-08 04:48:35] 2025-10-08 02:48:05,132 | INFO     | ***************************************
[2025-10-08 04:48:35] 2025-10-08 02:48:05,633 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 04:48:35] 2025-10-08 02:48:05,645 | INFO     | sufficient remaining disk space (378910277632 B)
[2025-10-08 04:48:35] 2025-10-08 02:48:05,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 04:48:35] 2025-10-08 02:48:05,646 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 04:48:35] 2025-10-08 02:48:05,646 | INFO     | update_server=False
[2025-10-08 04:48:35] 2025-10-08 02:48:05,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 04:48:35] 2025-10-08 02:48:05,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 04:48:35] 2025-10-08 02:48:05,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 04:48:35] 2025-10-08 02:48:05,646 | INFO     | aborting loop
[2025-10-08 04:48:35] 2025-10-08 02:48:06,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 04:48:35] 2025-10-08 02:48:06,596 | INFO     | all data control threads have been joined
[2025-10-08 04:48:35] 2025-10-08 02:48:06,648 | INFO     | [job] queue monitor thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:06,651 | INFO     | [job] retrieve thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:06,651 | INFO     | [job] job monitor thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:06,670 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:06,779 | INFO     | [monitor] cgroup control has ended
[2025-10-08 04:48:35] 2025-10-08 02:48:06,837 | INFO     | all payload control threads have been joined
[2025-10-08 04:48:35] 2025-10-08 02:48:06,845 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:07,006 | INFO     | all job control threads have been joined
[2025-10-08 04:48:35] 2025-10-08 02:48:07,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 04:48:35] 2025-10-08 02:48:07,464 | INFO     | [payload] failed_post thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:07,599 | INFO     | [data] control thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:07,785 | INFO     | [data] copytool_in thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:07,838 | INFO     | [payload] control thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:07,995 | INFO     | [payload] validate_post thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:08,012 | INFO     | [job] control thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:08,086 | INFO     | [job] validate thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:08,099 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:08,575 | INFO     | [data] copytool_out thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:11,256 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:16,031 | INFO     | job.realtimelogging is not enabled
[2025-10-08 04:48:35] 2025-10-08 02:48:17,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 04:48:35] 2025-10-08 02:48:17,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140378191996736)>', '<ExcThread(monitor, started 140377566729984)>']
[2025-10-08 04:48:35] 2025-10-08 02:48:22,220 | INFO     | all workflow threads have been joined
[2025-10-08 04:48:35] 2025-10-08 02:48:22,220 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 04:48:35] 2025-10-08 02:48:22,220 | INFO     | traces error code: 0
[2025-10-08 04:48:35] 2025-10-08 02:48:22,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 04:48:35] 2025-10-08 02:48:35,377 | INFO     | PID=1430518 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 04:48:35] 2025-10-08 02:48:35,378 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 04:48:35] 2025-10-08 02:48:35,378 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 04:48:35] 2025-10-08 02:48:35,378 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 04:48:35] 2025-10-08 02:48:35,378 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 04:48:35] 2025-10-08 02:48:35,378 | INFO     | [monitor] control thread has ended
[2025-10-08 04:48:35] 2025-10-08 02:48:35,424 [wrapper] ==== pilot stdout END ====
[2025-10-08 04:48:35] 2025-10-08 02:48:35,427 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 04:48:35] 2025-10-08 02:48:35,429 [wrapper] pilotpid: 1430518
[2025-10-08 04:48:35] 2025-10-08 02:48:35,432 [wrapper] Pilot exit status: 0
[2025-10-08 04:48:35] 2025-10-08 02:48:35,439 [wrapper] pandaids: 6833428626
[2025-10-08 04:48:35] 2025-10-08 02:48:35,456 [wrapper] cleanup supervisor_pilot 1446595 1430519
[2025-10-08 04:48:35] 2025-10-08 02:48:35,459 [wrapper] Test setup, not cleaning
[2025-10-08 04:48:35] 2025-10-08 02:48:35,461 [wrapper] apfmon messages muted
[2025-10-08 04:48:35] 2025-10-08 02:48:35,464 [wrapper] ==== wrapper stdout END ====
[2025-10-08 04:48:35] 2025-10-08 02:48:35,466 [wrapper] ==== wrapper stderr END ====
[2025-10-08 04:48:35]  *** Error codes and diagnostics ***
[2025-10-08 04:48:35]     "exeErrorCode": 0,
[2025-10-08 04:48:35]     "exeErrorDiag": "",
[2025-10-08 04:48:35]     "pilotErrorCode": 0,
[2025-10-08 04:48:35]     "pilotErrorDiag": "",
[2025-10-08 04:48:35]  *** Listing of results directory ***
[2025-10-08 04:48:35] total 391756
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc    552446 Oct  7 12:05 pilot3.tar.gz
[2025-10-08 04:48:35] -rwx------ 1 boinc boinc     36292 Oct  7 12:08 runpilot2-wrapper.sh
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc      5112 Oct  7 12:08 queuedata.json
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc       100 Oct  8 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 04:48:35] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 03:34 run_atlas
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc       105 Oct  8 03:34 job.xml
[2025-10-08 04:48:35] -rw-r--r-- 2 boinc boinc 215672743 Oct  8 03:34 EVNT.46376901._004931.pool.root.1
[2025-10-08 04:48:35] -rw-r--r-- 2 boinc boinc    565606 Oct  8 03:34 input.tar.gz
[2025-10-08 04:48:35] -rw-r--r-- 2 boinc boinc     15120 Oct  8 03:34 start_atlas.sh
[2025-10-08 04:48:35] drwxrwx--x 2 boinc boinc      4096 Oct  8 03:34 shared
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc         0 Oct  8 03:34 boinc_setup_complete
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc      6448 Oct  8 03:34 init_data.xml
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc         0 Oct  8 03:34 boinc_lockfile
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc      2521 Oct  8 03:34 pandaJob.out
[2025-10-08 04:48:35] -rw------- 1 boinc boinc    979833 Oct  8 03:35 agis_schedconf.cvmfs.json
[2025-10-08 04:48:35] -rw------- 1 boinc boinc   1560401 Oct  8 03:35 agis_ddmendpoints.agis.ALL.json
[2025-10-08 04:48:35] drwx------ 4 boinc boinc      4096 Oct  8 03:35 pilot3
[2025-10-08 04:48:35] -rw------- 1 boinc boinc 179839490 Oct  8 04:47 HITS.46376905._132427.pool.root.1
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc       529 Oct  8 04:47 boinc_task_state.xml
[2025-10-08 04:48:35] -rw------- 1 boinc boinc      1019 Oct  8 04:47 memory_monitor_summary.json
[2025-10-08 04:48:35] -rw------- 1 boinc boinc    237813 Oct  8 04:47 log.46376905._132427.job.log.tgz.1
[2025-10-08 04:48:35] -rw------- 1 boinc boinc      7763 Oct  8 04:48 heartbeat.json
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc      8192 Oct  8 04:48 boinc_mmap_file
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc        27 Oct  8 04:48 wrapper_checkpoint.txt
[2025-10-08 04:48:35] -rw------- 1 boinc boinc        95 Oct  8 04:48 pilot_heartbeat.json
[2025-10-08 04:48:35] -rw------- 1 boinc boinc       747 Oct  8 04:48 pilotlog.txt
[2025-10-08 04:48:35] -rw------- 1 boinc boinc    647124 Oct  8 04:48 log.46376905._132427.job.log.1
[2025-10-08 04:48:35] -rw------- 1 boinc boinc       357 Oct  8 04:48 output.list
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc       620 Oct  8 04:48 runtime_log
[2025-10-08 04:48:35] -rw------- 1 boinc boinc    901120 Oct  8 04:48 result.tar.gz
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc      8792 Oct  8 04:48 runtime_log.err
[2025-10-08 04:48:35] -rw------- 1 boinc boinc       661 Oct  8 04:48 qlpNDmNnJQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZVLMDmlWYzbn.diag
[2025-10-08 04:48:35] -rw-r--r-- 1 boinc boinc     10709 Oct  8 04:48 stderr.txt
[2025-10-08 04:48:35] HITS file was successfully produced:
[2025-10-08 04:48:35] -rw------- 1 boinc boinc 179839490 Oct  8 04:47 shared/HITS.pool.root.1
[2025-10-08 04:48:35]  *** Contents of shared directory: ***
[2025-10-08 04:48:35] total 387708
[2025-10-08 04:48:35] -rw-r--r-- 2 boinc boinc 215672743 Oct  8 03:34 ATLAS.root_0
[2025-10-08 04:48:35] -rw-r--r-- 2 boinc boinc    565606 Oct  8 03:34 input.tar.gz
[2025-10-08 04:48:35] -rw-r--r-- 2 boinc boinc     15120 Oct  8 03:34 start_atlas.sh
[2025-10-08 04:48:35] -rw------- 1 boinc boinc 179839490 Oct  8 04:47 HITS.pool.root.1
[2025-10-08 04:48:35] -rw------- 1 boinc boinc    901120 Oct  8 04:48 result.tar.gz
04:48:37 (1426793): run_atlas exited; CPU time 12492.605530
04:48:37 (1426793): called boinc_finish(0)

</stderr_txt>
]]>

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