Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:17:24 (16522): wrapper (7.7.26015): starting
03:17:24 (16522): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 03:17:24] Arguments: --nthreads 8
[2025-10-08 03:17:24] Threads: 8
[2025-10-08 03:17:24] Checking for CVMFS
[2025-10-08 03:17:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 03:17:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 03:17:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 03:17:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 03:17:27] 2.11.2.0 6199 214174 137812 151453 1 64 17486624 25165824 4538 130560 0 152732186 99.912 63591019 3129 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 03:17:27] CVMFS is ok
[2025-10-08 03:17:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 03:17:27] Checking for apptainer binary...
[2025-10-08 03:17:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 03:17:27] Running /usr/bin/apptainer --version
[2025-10-08 03:17:27] apptainer version 1.3.2-1.el7
[2025-10-08 03:17:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 03:17:38] cg-vwn228.simple-grid.lan
[2025-10-08 03:17:38] apptainer works
[2025-10-08 03:17:38] Set ATHENA_PROC_NUMBER=8
[2025-10-08 03:17:38] Set ATHENA_CORE_NUMBER=8
[2025-10-08 03:17:38] Starting ATLAS job with PandaID=6834950510
[2025-10-08 03:17:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 08:26:02]  *** The last 200 lines of the pilot log: ***
[2025-10-08 08:26:03] 2025-10-08 06:25:10,314 | INFO     | mean x: 1759895748.5
[2025-10-08 08:26:03] 2025-10-08 06:25:10,314 | INFO     | mean y: 2464148.8
[2025-10-08 08:26:03] 2025-10-08 06:25:10,314 | INFO     | -- intersect: -19628143703.815086
[2025-10-08 08:26:03] 2025-10-08 06:25:10,314 | INFO     | intersect: -19628143703.815086
[2025-10-08 08:26:03] 2025-10-08 06:25:10,314 | INFO     | chi2: 6.237684579443591
[2025-10-08 08:26:03] 2025-10-08 06:25:10,319 | INFO     | sum of square deviations: 7178069470.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,322 | INFO     | sum of deviations: 101453633763.99997
[2025-10-08 08:26:03] 2025-10-08 06:25:10,323 | INFO     | mean x: 1759895596.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,323 | INFO     | mean y: 2470823.2175438595
[2025-10-08 08:26:03] 2025-10-08 06:25:10,323 | INFO     | -- intersect: -24871599287.928993
[2025-10-08 08:26:03] 2025-10-08 06:25:10,323 | INFO     | intersect: -24871599287.928993
[2025-10-08 08:26:03] 2025-10-08 06:25:10,324 | INFO     | chi2: 5.509007827481066
[2025-10-08 08:26:03] 2025-10-08 06:25:10,324 | INFO     | current chi2=5.509007827481066 (change=11.681846728253824 %)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,324 | INFO     | right removable region: 284
[2025-10-08 08:26:03] 2025-10-08 06:25:10,324 | INFO     | sum of square deviations: 7178069470.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,327 | INFO     | sum of deviations: -12962842759.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,327 | INFO     | mean x: 1759895901.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,327 | INFO     | mean y: 2502716.8280701754
[2025-10-08 08:26:03] 2025-10-08 06:25:10,327 | INFO     | -- intersect: 3180690658.894843
[2025-10-08 08:26:03] 2025-10-08 06:25:10,327 | INFO     | intersect: 3180690658.894843
[2025-10-08 08:26:03] 2025-10-08 06:25:10,328 | INFO     | chi2: 1.8898363718353903
[2025-10-08 08:26:03] 2025-10-08 06:25:10,328 | INFO     | current chi2=1.8898363718353903 (change=69.70291864286658 %)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,328 | INFO     | sum of square deviations: 6806862510.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,331 | INFO     | sum of deviations: -49729625908.999985
[2025-10-08 08:26:03] 2025-10-08 06:25:10,331 | INFO     | mean x: 1759896053.5
[2025-10-08 08:26:03] 2025-10-08 06:25:10,332 | INFO     | mean y: 2517716.65
[2025-10-08 08:26:03] 2025-10-08 06:25:10,332 | INFO     | -- intersect: 12859979175.68576
[2025-10-08 08:26:03] 2025-10-08 06:25:10,332 | INFO     | intersect: 12859979175.68576
[2025-10-08 08:26:03] 2025-10-08 06:25:10,332 | INFO     | chi2: 0.9745521010341721
[2025-10-08 08:26:03] 2025-10-08 06:25:10,332 | INFO     | current chi2=0.9745521010341721 (change=48.43193222661405 %)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,333 | INFO     | sum of square deviations: 6448679050.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,335 | INFO     | sum of deviations: -51708220994.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,336 | INFO     | mean x: 1759896206.0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,336 | INFO     | mean y: 2518544.7054545456
[2025-10-08 08:26:03] 2025-10-08 06:25:10,336 | INFO     | -- intersect: 14114106552.22928
[2025-10-08 08:26:03] 2025-10-08 06:25:10,336 | INFO     | intersect: 14114106552.22928
[2025-10-08 08:26:03] 2025-10-08 06:25:10,337 | INFO     | chi2: 0.9582695419262561
[2025-10-08 08:26:03] 2025-10-08 06:25:10,337 | INFO     | current chi2=0.9582695419262561 (change=1.6707735882604233 %)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,337 | INFO     | left removable region: 30
[2025-10-08 08:26:03] 2025-10-08 06:25:10,337 | INFO     | sum of square deviations: 5081276667.5
[2025-10-08 08:26:03] 2025-10-08 06:25:10,339 | INFO     | sum of deviations: -6932756506.000001
[2025-10-08 08:26:03] 2025-10-08 06:25:10,340 | INFO     | mean x: 1759896480.5
[2025-10-08 08:26:03] 2025-10-08 06:25:10,340 | INFO     | mean y: 2513933.8346456694
[2025-10-08 08:26:03] 2025-10-08 06:25:10,340 | INFO     | -- intersect: 2403669110.664599
[2025-10-08 08:26:03] 2025-10-08 06:25:10,340 | INFO     | intersect: 2403669110.664599
[2025-10-08 08:26:03] 2025-10-08 06:25:10,340 | INFO     | chi2: 0.08726846052473912
[2025-10-08 08:26:03] 2025-10-08 06:25:10,340 | INFO     | -- intersect: 2403669110.664599
[2025-10-08 08:26:03] 2025-10-08 06:25:10,341 | INFO     | current memory leak: -1.36 B/s (using 254 data points, chi2=0.09)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | ..............................
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | . Timing measurements:
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | . get job = 0 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | . initial setup = 12 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | . payload setup = 134 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | . stage-in = 0 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | . payload execution = 17813 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,342 | INFO     | . stage-out = 8 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,343 | INFO     | . log creation = 1 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,343 | INFO     | ..............................
[2025-10-08 08:26:03] 2025-10-08 06:25:10,352 | INFO     | time since job start (18228s) is within the limit (172800.0s)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,548 | INFO     | 
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | job summary report
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | --------------------------------------------------
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | PanDA job id: 6834950510
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | task id: 46373048
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | errors: (none)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | pilot state: finished 
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | transexitcode: 0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | exeerrorcode: 0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,549 | INFO     | exeerrordiag: 
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | exitcode: 0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | exitmsg: OK
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | cpuconsumptiontime: 67720 s
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | nevents: 400
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | neventsw: 0
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | pid: 26854
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | pgrp: 26854
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | corecount: 8
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | event service: False
[2025-10-08 08:26:03] 2025-10-08 06:25:10,550 | INFO     | sizes: {0: 2348621, 1: 2348820, 12: 2348820, 23: 2348848, 33: 2348876, 44: 2348932, 55: 2349088, 65: 2349116, 72: 2349406, 76: 2349434, 17952: 2381321, 17961: 2390
[2025-10-08 08:26:03] 2025-10-08 06:25:10,551 | INFO     | --------------------------------------------------
[2025-10-08 08:26:03] 2025-10-08 06:25:10,551 | INFO     | 
[2025-10-08 08:26:03] 2025-10-08 06:25:10,551 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-10-08 08:26:03] 2025-10-08 06:25:10,627 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,627 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,627 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,627 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,627 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | job 6834950510 has completed (purged errors)
[2025-10-08 08:26:03] 2025-10-08 06:25:10,629 | INFO     | overall cleanup function is called
[2025-10-08 08:26:03] 2025-10-08 06:25:11,483 | INFO     | PID=20303 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 08:26:03] 2025-10-08 06:25:11,483 | INFO     | .. there are 9 such processes running
[2025-10-08 08:26:03] 2025-10-08 06:25:11,639 | INFO     | --- collectZombieJob: --- 10, [26854]
[2025-10-08 08:26:03] 2025-10-08 06:25:11,639 | INFO     | zombie collector waiting for pid 26854
[2025-10-08 08:26:03] 2025-10-08 06:25:11,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 08:26:03] 2025-10-08 06:25:11,640 | INFO     | collected zombie processes
[2025-10-08 08:26:03] 2025-10-08 06:25:11,640 | INFO     | will attempt to kill all subprocesses of pid=26854
[2025-10-08 08:26:03] 2025-10-08 06:25:11,782 | INFO     | process IDs to be killed: [26854] (in reverse order)
[2025-10-08 08:26:03] 2025-10-08 06:25:11,919 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 08:26:03] 2025-10-08 06:25:11,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 08:26:03] 2025-10-08 06:25:11,922 | INFO     | did not find any defunct processes belonging to 26854
[2025-10-08 08:26:03] 2025-10-08 06:25:11,926 | INFO     | did not find any defunct processes belonging to 26854
[2025-10-08 08:26:03] 2025-10-08 06:25:11,926 | INFO     | ready for new job
[2025-10-08 08:26:03] 2025-10-08 06:25:11,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 08:26:03] 2025-10-08 06:25:11,929 | INFO     | ***************************************
[2025-10-08 08:26:03] 2025-10-08 06:25:11,929 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 08:26:03] 2025-10-08 06:25:11,929 | INFO     | ***************************************
[2025-10-08 08:26:03] 2025-10-08 06:25:11,929 | INFO     | 
[2025-10-08 08:26:03] 2025-10-08 06:25:11,930 | INFO     | pilot is running in a VM
[2025-10-08 08:26:03] 2025-10-08 06:25:11,930 | INFO     | architecture information:
[2025-10-08 08:26:03] 2025-10-08 06:25:11,935 | INFO     | executing command: cat /etc/os-release
[2025-10-08 08:26:03] 2025-10-08 06:25:12,000 | INFO     | cat /etc/os-release:
[2025-10-08 08:26:03] NAME="CentOS Linux"
[2025-10-08 08:26:03] VERSION="7 (Core)"
[2025-10-08 08:26:03] ID="centos"
[2025-10-08 08:26:03] ID_LIKE="rhel fedora"
[2025-10-08 08:26:03] VERSION_ID="7"
[2025-10-08 08:26:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 08:26:03] ANSI_COLOR="0;31"
[2025-10-08 08:26:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 08:26:03] HOME_URL="https://www.centos.org/"
[2025-10-08 08:26:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 08:26:03] 
[2025-10-08 08:26:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 08:26:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 08:26:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 08:26:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 08:26:03] 
[2025-10-08 08:26:03] 2025-10-08 06:25:12,000 | INFO     | ***************************************
[2025-10-08 08:26:03] 2025-10-08 06:25:12,504 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-10-08 08:26:03] 2025-10-08 06:25:12,593 | INFO     | sufficient remaining disk space (496245932032 B)
[2025-10-08 08:26:03] 2025-10-08 06:25:12,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 08:26:03] 2025-10-08 06:25:12,593 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 08:26:03] 2025-10-08 06:25:12,594 | INFO     | update_server=False
[2025-10-08 08:26:03] 2025-10-08 06:25:12,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 08:26:03] 2025-10-08 06:25:12,594 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 08:26:03] 2025-10-08 06:25:12,906 | INFO     | all payload control threads have been joined
[2025-10-08 08:26:03] 2025-10-08 06:25:13,060 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 08:26:03] 2025-10-08 06:25:13,061 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 08:26:03] 2025-10-08 06:25:13,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 08:26:03] 2025-10-08 06:25:13,061 | INFO     | will abort loop
[2025-10-08 08:26:03] 2025-10-08 06:25:13,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 08:26:03] 2025-10-08 06:25:13,417 | INFO     | all data control threads have been joined
[2025-10-08 08:26:03] 2025-10-08 06:25:13,600 | INFO     | [job] retrieve thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:13,907 | INFO     | [payload] failed_post thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:13,912 | INFO     | [payload] control thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:13,923 | INFO     | all job control threads have been joined
[2025-10-08 08:26:03] 2025-10-08 06:25:13,953 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,067 | INFO     | [job] job monitor thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,423 | INFO     | [data] control thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,484 | INFO     | [data] copytool_in thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,503 | INFO     | [payload] validate_post thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,510 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,886 | INFO     | [job] validate thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,929 | INFO     | [job] control thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:14,960 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:15,306 | INFO     | [data] copytool_out thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:15,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 08:26:03] 2025-10-08 06:25:16,500 | INFO     | [job] queue monitor thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:16,603 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 08:26:03] 2025-10-08 06:25:43,689 | INFO     | PID=20303 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 08:26:03] 2025-10-08 06:25:43,690 | INFO     | .. there are 9 such processes running
[2025-10-08 08:26:03] 2025-10-08 06:25:43,691 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 08:26:03] 2025-10-08 06:25:43,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 08:26:03] 2025-10-08 06:25:43,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 08:26:03] 2025-10-08 06:25:53,472 | INFO     | [monitor] cgroup control has ended
[2025-10-08 08:26:03] 2025-10-08 06:25:54,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140209567573824)>', '<ExcThread(monitor, started 140208997656320)>']
[2025-10-08 08:26:03] 2025-10-08 06:25:54,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 08:26:03] 2025-10-08 06:25:54,758 | INFO     | [monitor] control thread has ended
[2025-10-08 08:26:03] 2025-10-08 06:25:59,398 | INFO     | all workflow threads have been joined
[2025-10-08 08:26:03] 2025-10-08 06:25:59,399 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 08:26:03] 2025-10-08 06:25:59,399 | INFO     | traces error code: 0
[2025-10-08 08:26:03] 2025-10-08 06:25:59,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 08:26:03] 2025-10-08 06:25:59,806 [wrapper] ==== pilot stdout END ====
[2025-10-08 08:26:03] 2025-10-08 06:25:59,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 08:26:03] 2025-10-08 06:26:00,016 [wrapper] pilotpid: 20303
[2025-10-08 08:26:03] 2025-10-08 06:26:00,132 [wrapper] Pilot exit status: 0
[2025-10-08 08:26:03] 2025-10-08 06:26:00,600 [wrapper] pandaids: 6834950510
[2025-10-08 08:26:03] 2025-10-08 06:26:00,785 [wrapper] cleanup supervisor_pilot 26759 20304
[2025-10-08 08:26:03] 2025-10-08 06:26:00,799 [wrapper] Test setup, not cleaning
[2025-10-08 08:26:03] 2025-10-08 06:26:00,804 [wrapper] apfmon messages muted
[2025-10-08 08:26:03] 2025-10-08 06:26:00,811 [wrapper] ==== wrapper stdout END ====
[2025-10-08 08:26:03] 2025-10-08 06:26:00,817 [wrapper] ==== wrapper stderr END ====
[2025-10-08 08:26:03]  *** Error codes and diagnostics ***
[2025-10-08 08:26:03]     "exeErrorCode": 0,
[2025-10-08 08:26:03]     "exeErrorDiag": "",
[2025-10-08 08:26:03]     "pilotErrorCode": 0,
[2025-10-08 08:26:03]     "pilotErrorDiag": "",
[2025-10-08 08:26:03]  *** Listing of results directory ***
[2025-10-08 08:26:03] total 420812
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc    552446 Oct  7 15:09 pilot3.tar.gz
[2025-10-08 08:26:03] -rwx------. 1 boinc boinc     36292 Oct  7 15:36 runpilot2-wrapper.sh
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc      5112 Oct  7 15:36 queuedata.json
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc       100 Oct  8 03:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 08:26:03] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 03:17 run_atlas
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc       105 Oct  8 03:17 job.xml
[2025-10-08 08:26:03] -rw-r--r--. 2 boinc boinc 222632776 Oct  8 03:17 EVNT.46373045._002030.pool.root.1
[2025-10-08 08:26:03] drwxrwx--x. 2 boinc boinc        68 Oct  8 03:17 shared
[2025-10-08 08:26:03] -rw-r--r--. 2 boinc boinc    565606 Oct  8 03:17 input.tar.gz
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc      6391 Oct  8 03:17 init_data.xml
[2025-10-08 08:26:03] -rw-r--r--. 2 boinc boinc     15120 Oct  8 03:17 start_atlas.sh
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc         0 Oct  8 03:17 boinc_lockfile
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc      2538 Oct  8 03:17 pandaJob.out
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc    979833 Oct  8 03:21 agis_schedconf.cvmfs.json
[2025-10-08 08:26:03] drwx------. 4 boinc boinc      4096 Oct  8 03:21 pilot3
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc 198561265 Oct  8 08:22 HITS.46373048._097650.pool.root.1
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc       531 Oct  8 08:22 boinc_task_state.xml
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc      1027 Oct  8 08:23 memory_monitor_summary.json
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc   1560401 Oct  8 08:23 agis_ddmendpoints.agis.ALL.json
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc    496383 Oct  8 08:23 log.46373048._097650.job.log.tgz.1
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc      7777 Oct  8 08:25 heartbeat.json
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc        95 Oct  8 08:25 pilot_heartbeat.json
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc        28 Oct  8 08:25 wrapper_checkpoint.txt
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc      8192 Oct  8 08:25 boinc_mmap_file
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc      5071 Oct  8 08:25 pilotlog.txt
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc   2420774 Oct  8 08:26 log.46373048._097650.job.log.1
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc       357 Oct  8 08:26 output.list
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc       620 Oct  8 08:26 runtime_log
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc   2938880 Oct  8 08:26 result.tar.gz
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc       657 Oct  8 08:26 ZCrKDmm2MQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIBXNDmuXEOEn.diag
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc      8717 Oct  8 08:26 runtime_log.err
[2025-10-08 08:26:03] -rw-r--r--. 1 boinc boinc     20791 Oct  8 08:26 stderr.txt
[2025-10-08 08:26:03] HITS file was successfully produced:
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc 198561265 Oct  8 08:22 shared/HITS.pool.root.1
[2025-10-08 08:26:03]  *** Contents of shared directory: ***
[2025-10-08 08:26:03] total 414768
[2025-10-08 08:26:03] -rw-r--r--. 2 boinc boinc 222632776 Oct  8 03:17 ATLAS.root_0
[2025-10-08 08:26:03] -rw-r--r--. 2 boinc boinc    565606 Oct  8 03:17 input.tar.gz
[2025-10-08 08:26:03] -rw-r--r--. 2 boinc boinc     15120 Oct  8 03:17 start_atlas.sh
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc 198561265 Oct  8 08:22 HITS.pool.root.1
[2025-10-08 08:26:03] -rw-------. 1 boinc boinc   2938880 Oct  8 08:26 result.tar.gz
08:26:04 (16522): run_atlas exited; CPU time 67972.437515
08:26:04 (16522): called boinc_finish(0)

</stderr_txt>
]]>

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