Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:44:13 (3456460): wrapper (7.7.26015): starting
06:44:13 (3456460): wrapper: running run_atlas (--nthreads 6)
[2025-10-08 06:44:13] Arguments: --nthreads 6
[2025-10-08 06:44:13] Threads: 6
[2025-10-08 06:44:13] Checking for CVMFS
[2025-10-08 06:44:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 06:44:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 06:44:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 06:44:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 06:44:13] 2.11.5.0 2161363 1220 67212 151448 0 57 37932977 52428800 202 130560 0 4101032 99.998 41483 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-08 06:44:13] CVMFS is ok
[2025-10-08 06:44:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 06:44:13] Checking for apptainer binary...
[2025-10-08 06:44:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 06:44:13] Running /usr/bin/apptainer --version
[2025-10-08 06:44:13] apptainer version 1.3.5-1.el9
[2025-10-08 06:44:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 06:44:13] testio008
[2025-10-08 06:44:13] apptainer works
[2025-10-08 06:44:13] Set ATHENA_PROC_NUMBER=6
[2025-10-08 06:44:13] Set ATHENA_CORE_NUMBER=6
[2025-10-08 06:44:13] Starting ATLAS job with PandaID=6833551348
[2025-10-08 06:44:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 07:45:33]  *** The last 200 lines of the pilot log: ***
[2025-10-08 07:45:33] 2025-10-07 22:44:26,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:27,342 | INFO     | time since job start (3605s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:29,347 | INFO     | time since job start (3607s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:29,399 | INFO     | monitor loop #284: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:29,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:31,353 | INFO     | time since job start (3609s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:31,902 | INFO     | monitor loop #285: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:31,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:33,358 | INFO     | time since job start (3611s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:34,404 | INFO     | monitor loop #286: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:34,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:35,363 | INFO     | time since job start (3613s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:36,907 | INFO     | monitor loop #287: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:36,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:37,368 | INFO     | time since job start (3615s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:39,373 | INFO     | time since job start (3617s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:39,410 | INFO     | monitor loop #288: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:39,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:41,378 | INFO     | time since job start (3619s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:41,912 | INFO     | monitor loop #289: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:41,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:42,421 | INFO     | PID=3460256 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 07:45:33] 2025-10-07 22:44:42,421 | INFO     | .. there are 3 such processes running
[2025-10-08 07:45:33] 2025-10-07 22:44:43,421 | INFO     | time since job start (3621s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:44,415 | INFO     | monitor loop #290: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:44,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:45,426 | INFO     | time since job start (3623s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:46,917 | INFO     | monitor loop #291: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:46,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:47,432 | INFO     | time since job start (3625s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:49,420 | INFO     | monitor loop #292: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:49,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:49,437 | INFO     | time since job start (3627s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:51,443 | INFO     | time since job start (3629s) is within the limit (172800.0s)
[2025-10-08 07:45:33] 2025-10-07 22:44:51,922 | INFO     | monitor loop #293: job 0:6833551348 is in state 'finished'
[2025-10-08 07:45:33] 2025-10-07 22:44:51,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 07:45:33] 2025-10-07 22:44:53,305 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 07:45:33] 2025-10-07 22:44:53,306 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4240.282099999999
[2025-10-08 07:45:33] 2025-10-07 22:44:53,307 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6833551348/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 07:45:33] 2025-10-07 22:44:53,307 | INFO     | extracted standard info from prmon json
[2025-10-08 07:45:33] 2025-10-07 22:44:53,307 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 07:45:33] 2025-10-07 22:44:53,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | fitting pss+swap vs Time
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | sum of square deviations: 41117050.0
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | sum of deviations: -1740967633.0000002
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | mean x: 1759875309.0
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | mean y: 2474509.9607843137
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | -- intersect: 74518665508.21756
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | intersect: 74518665508.21756
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | chi2: 0.011264298179861229
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | -- intersect: 74518665508.21756
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | current memory leak: -42.34 B/s (using 51 data points, chi2=0.01)
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | could have reported an average CPU frequency of 3948 MHz (5 samples)
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | ..............................
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | . Timing measurements:
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | . get job = 0 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | . initial setup = 5 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | . payload setup = 2 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | . stage-in = 0 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,308 | INFO     | . payload execution = 3535 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,309 | INFO     | . stage-out = 0 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,309 | INFO     | . log creation = 0 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,309 | INFO     | ..............................
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | 
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | job summary report
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | --------------------------------------------------
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | PanDA job id: 6833551348
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | task id: 46376905
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | errors: (none)
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | pilot state: finished 
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | transexitcode: 0
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | exeerrorcode: 0
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | exeerrordiag: 
[2025-10-08 07:45:33] 2025-10-07 22:44:53,331 | INFO     | exitcode: 0
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | exitmsg: OK
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | cpuconsumptiontime: 19026 s
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | nevents: 400
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | neventsw: 0
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | pid: 3467137
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | pgrp: 3467137
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | corecount: 6
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | event service: False
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | sizes: {0: 2348652, 2: 2349028, 11: 2349056, 3541: 2374755, 3543: 2383809, 3619: 2383979}
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | --------------------------------------------------
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | 
[2025-10-08 07:45:33] 2025-10-07 22:44:53,332 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | job 6833551348 has completed (purged errors)
[2025-10-08 07:45:33] 2025-10-07 22:44:53,340 | INFO     | overall cleanup function is called
[2025-10-08 07:45:33] 2025-10-07 22:44:54,346 | INFO     | --- collectZombieJob: --- 10, [3467137]
[2025-10-08 07:45:33] 2025-10-07 22:44:54,346 | INFO     | zombie collector waiting for pid 3467137
[2025-10-08 07:45:33] 2025-10-07 22:44:54,346 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 07:45:33] 2025-10-07 22:44:54,346 | INFO     | collected zombie processes
[2025-10-08 07:45:33] 2025-10-07 22:44:54,346 | INFO     | will attempt to kill all subprocesses of pid=3467137
[2025-10-08 07:45:33] 2025-10-07 22:44:54,378 | INFO     | process IDs to be killed: [3467137] (in reverse order)
[2025-10-08 07:45:33] 2025-10-07 22:44:54,393 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 07:45:33] 2025-10-07 22:44:54,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 07:45:33] 2025-10-07 22:44:54,394 | INFO     | did not find any defunct processes belonging to 3467137
[2025-10-08 07:45:33] 2025-10-07 22:44:54,395 | INFO     | did not find any defunct processes belonging to 3467137
[2025-10-08 07:45:33] 2025-10-07 22:44:54,395 | INFO     | ready for new job
[2025-10-08 07:45:33] 2025-10-07 22:44:54,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 07:45:33] 2025-10-07 22:44:54,396 | INFO     | ***************************************
[2025-10-08 07:45:33] 2025-10-07 22:44:54,396 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 07:45:33] 2025-10-07 22:44:54,396 | INFO     | ***************************************
[2025-10-08 07:45:33] 2025-10-07 22:44:54,396 | INFO     | 
[2025-10-08 07:45:33] 2025-10-07 22:44:54,396 | INFO     | architecture information:
[2025-10-08 07:45:33] 2025-10-07 22:44:54,396 | INFO     | executing command: cat /etc/os-release
[2025-10-08 07:45:33] 2025-10-07 22:44:54,401 | INFO     | cat /etc/os-release:
[2025-10-08 07:45:33] NAME="CentOS Linux"
[2025-10-08 07:45:33] VERSION="7 (Core)"
[2025-10-08 07:45:33] ID="centos"
[2025-10-08 07:45:33] ID_LIKE="rhel fedora"
[2025-10-08 07:45:33] VERSION_ID="7"
[2025-10-08 07:45:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 07:45:33] ANSI_COLOR="0;31"
[2025-10-08 07:45:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 07:45:33] HOME_URL="https://www.centos.org/"
[2025-10-08 07:45:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 07:45:33] 
[2025-10-08 07:45:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 07:45:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 07:45:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 07:45:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 07:45:33] 
[2025-10-08 07:45:33] 2025-10-07 22:44:54,401 | INFO     | ***************************************
[2025-10-08 07:45:33] 2025-10-07 22:44:54,904 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-08 07:45:33] 2025-10-07 22:44:54,910 | INFO     | sufficient remaining disk space (282985496576 B)
[2025-10-08 07:45:33] 2025-10-07 22:44:54,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 07:45:33] 2025-10-07 22:44:54,911 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 07:45:33] 2025-10-07 22:44:54,911 | INFO     | update_server=False
[2025-10-08 07:45:33] 2025-10-07 22:44:54,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 07:45:33] 2025-10-07 22:44:54,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 07:45:33] 2025-10-07 22:44:55,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 07:45:33] 2025-10-07 22:44:55,251 | INFO     | all data control threads have been joined
[2025-10-08 07:45:33] 2025-10-07 22:44:55,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 07:45:33] 2025-10-07 22:44:55,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 07:45:33] 2025-10-07 22:44:55,431 | INFO     | aborting loop
[2025-10-08 07:45:33] 2025-10-07 22:44:55,652 | INFO     | all payload control threads have been joined
[2025-10-08 07:45:33] 2025-10-07 22:44:55,914 | INFO     | [job] queue monitor thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:55,916 | INFO     | [job] retrieve thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:55,927 | INFO     | all job control threads have been joined
[2025-10-08 07:45:33] 2025-10-07 22:44:55,945 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,094 | INFO     | [payload] validate_post thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,200 | INFO     | [data] copytool_in thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,255 | INFO     | [data] control thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,435 | INFO     | [job] job monitor thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,550 | INFO     | [payload] failed_post thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,578 | INFO     | [job] validate thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,595 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,616 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,653 | INFO     | [payload] control thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:56,932 | INFO     | [job] control thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:57,029 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:57,221 | INFO     | [data] copytool_out thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:44:59,281 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 07:45:33] 2025-10-07 22:45:24,530 | INFO     | PID=3460256 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 07:45:33] 2025-10-07 22:45:24,531 | INFO     | .. there are 3 such processes running
[2025-10-08 07:45:33] 2025-10-07 22:45:24,531 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 07:45:33] 2025-10-07 22:45:24,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 07:45:33] 2025-10-07 22:45:24,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 07:45:33] 2025-10-07 22:45:27,951 | INFO     | [monitor] cgroup control has ended
[2025-10-08 07:45:33] 2025-10-07 22:45:28,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651547215680)>', '<ExcThread(monitor, started 140651266017024)>']
[2025-10-08 07:45:33] 2025-10-07 22:45:28,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 07:45:33] 2025-10-07 22:45:28,544 | INFO     | [monitor] control thread has ended
[2025-10-08 07:45:33] 2025-10-07 22:45:33,057 | INFO     | all workflow threads have been joined
[2025-10-08 07:45:33] 2025-10-07 22:45:33,057 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 07:45:33] 2025-10-07 22:45:33,057 | INFO     | traces error code: 0
[2025-10-08 07:45:33] 2025-10-07 22:45:33,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 07:45:33] 2025-10-07 22:45:33,092 [wrapper] ==== pilot stdout END ====
[2025-10-08 07:45:33] 2025-10-07 22:45:33,093 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 07:45:33] 2025-10-07 22:45:33,094 [wrapper] pilotpid: 3460256
[2025-10-08 07:45:33] 2025-10-07 22:45:33,095 [wrapper] Pilot exit status: 0
[2025-10-08 07:45:33] 2025-10-07 22:45:33,098 [wrapper] pandaids: 6833551348
[2025-10-08 07:45:33] 2025-10-07 22:45:33,106 [wrapper] cleanup supervisor_pilot 3517544 3460257
[2025-10-08 07:45:33] 2025-10-07 22:45:33,107 [wrapper] Test setup, not cleaning
[2025-10-08 07:45:33] 2025-10-07 22:45:33,108 [wrapper] apfmon messages muted
[2025-10-08 07:45:33] 2025-10-07 22:45:33,109 [wrapper] ==== wrapper stdout END ====
[2025-10-08 07:45:33] 2025-10-07 22:45:33,110 [wrapper] ==== wrapper stderr END ====
[2025-10-08 07:45:33]  *** Error codes and diagnostics ***
[2025-10-08 07:45:33]     "exeErrorCode": 0,
[2025-10-08 07:45:33]     "exeErrorDiag": "",
[2025-10-08 07:45:33]     "pilotErrorCode": 0,
[2025-10-08 07:45:33]     "pilotErrorDiag": "",
[2025-10-08 07:45:33]  *** Listing of results directory ***
[2025-10-08 07:45:33] total 383680
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc    552446 Oct  7 19:56 pilot3.tar.gz
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc      5112 Oct  7 20:00 queuedata.json
[2025-10-08 07:45:33] -rwx------. 1 boinc boinc     36292 Oct  7 20:01 runpilot2-wrapper.sh
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc       100 Oct  8 06:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 07:45:33] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 06:44 run_atlas
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc       105 Oct  8 06:44 job.xml
[2025-10-08 07:45:33] -rw-r--r--. 2 boinc boinc     15120 Oct  8 06:44 start_atlas.sh
[2025-10-08 07:45:33] drwxrwx--x. 2 boinc boinc        68 Oct  8 06:44 shared
[2025-10-08 07:45:33] -rw-r--r--. 2 boinc boinc    565604 Oct  8 06:44 input.tar.gz
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc      9509 Oct  8 06:44 init_data.xml
[2025-10-08 07:45:33] -rw-r--r--. 2 boinc boinc 213222930 Oct  8 06:44 EVNT.46376901._003249.pool.root.1
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc         0 Oct  8 06:44 boinc_lockfile
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc      2519 Oct  8 06:44 pandaJob.out
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc    979849 Oct  8 06:44 agis_schedconf.cvmfs.json
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc   1560401 Oct  8 06:44 agis_ddmendpoints.agis.ALL.json
[2025-10-08 07:45:33] drwx------. 4 boinc boinc      4096 Oct  8 06:44 pilot3
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc 174124597 Oct  8 07:43 HITS.46376905._133240.pool.root.1
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc       529 Oct  8 07:43 boinc_task_state.xml
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc      1016 Oct  8 07:43 memory_monitor_summary.json
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc    280973 Oct  8 07:43 log.46376905._133240.job.log.tgz.1
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc        95 Oct  8 07:44 pilot_heartbeat.json
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc      7758 Oct  8 07:44 heartbeat.json
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc      8192 Oct  8 07:45 boinc_mmap_file
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc        27 Oct  8 07:45 wrapper_checkpoint.txt
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc      4824 Oct  8 07:45 pilotlog.txt
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc    547210 Oct  8 07:45 log.46376905._133240.job.log.1
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc       357 Oct  8 07:45 output.list
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc       620 Oct  8 07:45 runtime_log
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc    849920 Oct  8 07:45 result.tar.gz
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc       641 Oct  8 07:45 W85MDmDdKQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmorWNDmds3jDm.diag
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc      8661 Oct  8 07:45 runtime_log.err
[2025-10-08 07:45:33] -rw-r--r--. 1 boinc boinc     21970 Oct  8 07:45 stderr.txt
[2025-10-08 07:45:33] HITS file was successfully produced:
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc 174124597 Oct  8 07:43 shared/HITS.pool.root.1
[2025-10-08 07:45:33]  *** Contents of shared directory: ***
[2025-10-08 07:45:33] total 379676
[2025-10-08 07:45:33] -rw-r--r--. 2 boinc boinc     15120 Oct  8 06:44 start_atlas.sh
[2025-10-08 07:45:33] -rw-r--r--. 2 boinc boinc    565604 Oct  8 06:44 input.tar.gz
[2025-10-08 07:45:33] -rw-r--r--. 2 boinc boinc 213222930 Oct  8 06:44 ATLAS.root_0
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc 174124597 Oct  8 07:43 HITS.pool.root.1
[2025-10-08 07:45:33] -rw-------. 1 boinc boinc    849920 Oct  8 07:45 result.tar.gz
07:45:34 (3456460): run_atlas exited; CPU time 19052.098952
07:45:34 (3456460): called boinc_finish(0)

</stderr_txt>
]]>

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