Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
18:51:31 (1134614): wrapper (7.7.26015): starting
18:51:31 (1134614): wrapper: running run_atlas (--nthreads 4)
[2025-10-07 18:51:31] Arguments: --nthreads 4
[2025-10-07 18:51:31] Threads: 4
[2025-10-07 18:51:31] Checking for CVMFS
[2025-10-07 18:51:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 18:51:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 18:51:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 18:51:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 18:51:31] 2.11.0.0 223286 9349 109560 151445 3 188 3484581 4096001 6454 130560 0 55759850 99.998 322993 2006 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-07 18:51:31] CVMFS is ok
[2025-10-07 18:51:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 18:51:31] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-07 18:51:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-07 18:51:31] Further information can be found at the LHC@home message board.
[2025-10-07 18:51:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 18:51:31] Checking for apptainer binary...
[2025-10-07 18:51:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 18:51:31] Running /usr/bin/apptainer --version
[2025-10-07 18:51:31] apptainer version 1.4.2
[2025-10-07 18:51:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 18:51:32] x32-linux2
[2025-10-07 18:51:32] apptainer works
[2025-10-07 18:51:32] Set ATHENA_PROC_NUMBER=4
[2025-10-07 18:51:32] Set ATHENA_CORE_NUMBER=4
[2025-10-07 18:51:32] Starting ATLAS job with PandaID=6834950512
[2025-10-07 18:51:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 20:21:55]  *** The last 200 lines of the pilot log: ***
[2025-10-07 20:21:55]  workdir=None
[2025-10-07 20:21:55] ]
[2025-10-07 20:21:55] 2025-10-08 00:21:00,263 | INFO     | transferring file log.46376905._135012.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6834950512/log.46376905._135012.job.log.tgz.1 to /var/lib/boinc
[2025-10-07 20:21:55] 2025-10-08 00:21:00,263 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6834950512/log.46376905._135012.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.463769
[2025-10-07 20:21:55] 2025-10-08 00:21:00,273 | INFO     | adding to output.list: log.46376905._135012.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/6f/log.46376905._135012.job.log.tg
[2025-10-07 20:21:55] 2025-10-08 00:21:00,273 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 20:21:55] 2025-10-08 00:21:00,274 | INFO     | summary of transferred files:
[2025-10-07 20:21:55] 2025-10-08 00:21:00,274 | INFO     |  -- lfn=log.46376905._135012.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 20:21:55] 2025-10-08 00:21:00,274 | INFO     | stage-out finished correctly
[2025-10-07 20:21:55] 2025-10-08 00:21:01,199 | INFO     | time since job start (5361s) is within the limit (172800.0s)
[2025-10-07 20:21:55] 2025-10-08 00:21:01,655 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 20:21:55] 2025-10-08 00:21:02,114 | INFO     | job 6834950512 has state=finished
[2025-10-07 20:21:55] 2025-10-08 00:21:02,114 | INFO     | preparing for final server update for job 6834950512 in state='finished'
[2025-10-07 20:21:55] 2025-10-08 00:21:02,115 | INFO     | this job has now completed (state=finished)
[2025-10-07 20:21:55] 2025-10-08 00:21:02,115 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 20:21:55] 2025-10-08 00:21:02,115 | INFO     | log transfer has been attempted: DONE
[2025-10-07 20:21:55] 2025-10-08 00:21:02,115 | INFO     | job 6834950512 has finished - writing final server update
[2025-10-07 20:21:55] 2025-10-08 00:21:02,115 | INFO     | total number of processed events: 400 (read)
[2025-10-07 20:21:55] 2025-10-08 00:21:02,115 | INFO     | executing command: lscpu
[2025-10-07 20:21:55] 2025-10-08 00:21:02,135 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 20:21:55] 2025-10-08 00:21:02,321 | INFO     | PID=1138441 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 20:21:55] 2025-10-08 00:21:02,321 | INFO     | .. there are 7 such processes running
[2025-10-07 20:21:55] 2025-10-08 00:21:03,321 | INFO     | time since job start (5363s) is within the limit (172800.0s)
[2025-10-07 20:21:55] 2025-10-08 00:21:04,333 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 20:21:55] 2025-10-08 00:21:04,335 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3926.1505625
[2025-10-07 20:21:55] 2025-10-08 00:21:04,337 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6834950512/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 20:21:55] 2025-10-08 00:21:04,338 | INFO     | extracted standard info from prmon json
[2025-10-07 20:21:55] 2025-10-08 00:21:04,338 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 20:21:55] 2025-10-08 00:21:04,338 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 20:21:55] 2025-10-08 00:21:04,338 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 20:21:55] 2025-10-08 00:21:04,338 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | fitting pss+swap vs Time
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | sum of square deviations: 164765880.0
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | sum of deviations: -4161249444.0000005
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | mean x: 1759880269.0
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | mean y: 2340971.3086419753
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | -- intersect: 44449047964.788246
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | intersect: 44449047964.788246
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | chi2: 0.013996111923162084
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | -- intersect: 44449047964.788246
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | current memory leak: -25.26 B/s (using 81 data points, chi2=0.01)
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | could have reported an average CPU frequency of 3823 MHz (6 samples)
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | ..............................
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | . Timing measurements:
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | . get job = 0 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | . initial setup = 2 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | . payload setup = 4 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | . stage-in = 0 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | . payload execution = 5336 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,339 | INFO     | . stage-out = 0 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,340 | INFO     | . log creation = 0 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,340 | INFO     | ..............................
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | 
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | job summary report
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | --------------------------------------------------
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | PanDA job id: 6834950512
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | task id: 46376905
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | errors: (none)
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | pilot state: finished 
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | transexitcode: 0
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | exeerrorcode: 0
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | exeerrordiag: 
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | exitcode: 0
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | exitmsg: OK
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | cpuconsumptiontime: 20674 s
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | nevents: 400
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | neventsw: 0
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | pid: 1145245
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | pgrp: 1145245
[2025-10-07 20:21:55] 2025-10-08 00:21:04,645 | INFO     | corecount: 4
[2025-10-07 20:21:55] 2025-10-08 00:21:04,646 | INFO     | event service: False
[2025-10-07 20:21:55] 2025-10-08 00:21:04,646 | INFO     | sizes: {0: 2348602, 1: 2348801, 4: 2349063, 11: 2349091, 5344: 2375704, 5345: 2384716, 5346: 2384900, 5349: 2385094}
[2025-10-07 20:21:55] 2025-10-08 00:21:04,646 | INFO     | --------------------------------------------------
[2025-10-07 20:21:55] 2025-10-08 00:21:04,646 | INFO     | 
[2025-10-07 20:21:55] 2025-10-08 00:21:04,646 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 20:21:55] 2025-10-08 00:21:04,656 | INFO     | job 6834950512 has completed (purged errors)
[2025-10-07 20:21:55] 2025-10-08 00:21:04,657 | INFO     | overall cleanup function is called
[2025-10-07 20:21:55] 2025-10-08 00:21:04,976 | WARNING  | process 1145245 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 20:21:55] 2025-10-08 00:21:05,033 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 20:21:55] 2025-10-08 00:21:05,034 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 20:21:55] 2025-10-08 00:21:05,034 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/3/PanDA_Pilot-6834950512/payload.stdout) since it has not been created yet
[2025-10-07 20:21:55] 2025-10-08 00:21:05,034 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-07 20:21:55] 2025-10-08 00:21:05,042 | INFO     | sufficient remaining disk space (415826444288 B)
[2025-10-07 20:21:55] 2025-10-08 00:21:05,042 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-07 20:21:55] 2025-10-08 00:21:05,042 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/3/PanDA_Pilot-6834950512/HITS.46376905._135012.pool.root.1 since it does not exist
[2025-10-07 20:21:55] 2025-10-08 00:21:05,125 | INFO     | number of running child processes to parent process 1145245: 1
[2025-10-07 20:21:55] 2025-10-08 00:21:05,126 | INFO     | maximum number of monitored processes: 6
[2025-10-07 20:21:55] 2025-10-08 00:21:05,126 | INFO     | aborting job monitoring since job object (job id=6834950512) has expired
[2025-10-07 20:21:55] 2025-10-08 00:21:05,663 | INFO     | --- collectZombieJob: --- 10, [1145245]
[2025-10-07 20:21:55] 2025-10-08 00:21:05,663 | INFO     | zombie collector waiting for pid 1145245
[2025-10-07 20:21:55] 2025-10-08 00:21:05,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 20:21:55] 2025-10-08 00:21:05,663 | INFO     | collected zombie processes
[2025-10-07 20:21:55] 2025-10-08 00:21:05,663 | INFO     | will attempt to kill all subprocesses of pid=1145245
[2025-10-07 20:21:55] 2025-10-08 00:21:05,751 | INFO     | process IDs to be killed: [1145245] (in reverse order)
[2025-10-07 20:21:55] 2025-10-08 00:21:05,783 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 20:21:55] 2025-10-08 00:21:05,783 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 20:21:55] 2025-10-08 00:21:05,785 | INFO     | did not find any defunct processes belonging to 1145245
[2025-10-07 20:21:55] 2025-10-08 00:21:05,787 | INFO     | did not find any defunct processes belonging to 1145245
[2025-10-07 20:21:55] 2025-10-08 00:21:05,787 | INFO     | ready for new job
[2025-10-07 20:21:55] 2025-10-08 00:21:05,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 20:21:55] 2025-10-08 00:21:05,788 | INFO     | ***************************************
[2025-10-07 20:21:55] 2025-10-08 00:21:05,788 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 20:21:55] 2025-10-08 00:21:05,788 | INFO     | ***************************************
[2025-10-07 20:21:55] 2025-10-08 00:21:05,788 | INFO     | 
[2025-10-07 20:21:55] 2025-10-08 00:21:05,789 | INFO     | architecture information:
[2025-10-07 20:21:55] 2025-10-08 00:21:05,789 | INFO     | executing command: cat /etc/os-release
[2025-10-07 20:21:55] 2025-10-08 00:21:05,796 | INFO     | cat /etc/os-release:
[2025-10-07 20:21:55] NAME="CentOS Linux"
[2025-10-07 20:21:55] VERSION="7 (Core)"
[2025-10-07 20:21:55] ID="centos"
[2025-10-07 20:21:55] ID_LIKE="rhel fedora"
[2025-10-07 20:21:55] VERSION_ID="7"
[2025-10-07 20:21:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 20:21:55] ANSI_COLOR="0;31"
[2025-10-07 20:21:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 20:21:55] HOME_URL="https://www.centos.org/"
[2025-10-07 20:21:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 20:21:55] 
[2025-10-07 20:21:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 20:21:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 20:21:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 20:21:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 20:21:55] 
[2025-10-07 20:21:55] 2025-10-08 00:21:05,796 | INFO     | ***************************************
[2025-10-07 20:21:55] 2025-10-08 00:21:06,299 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-07 20:21:55] 2025-10-08 00:21:06,306 | INFO     | sufficient remaining disk space (415827492864 B)
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | INFO     | update_server=False
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 20:21:55] 2025-10-08 00:21:06,307 | INFO     | aborting loop
[2025-10-07 20:21:55] 2025-10-08 00:21:06,887 | INFO     | all data control threads have been joined
[2025-10-07 20:21:55] 2025-10-08 00:21:07,312 | INFO     | [job] retrieve thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:07,312 | INFO     | [job] queue monitor thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:07,313 | INFO     | [job] job monitor thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:07,521 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:07,561 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:07,565 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:07,597 | INFO     | all payload control threads have been joined
[2025-10-07 20:21:55] 2025-10-08 00:21:07,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 20:21:55] 2025-10-08 00:21:07,794 | INFO     | all job control threads have been joined
[2025-10-07 20:21:55] 2025-10-08 00:21:07,888 | INFO     | [data] control thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:08,093 | INFO     | [payload] validate_post thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:08,183 | INFO     | [data] copytool_in thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:08,312 | INFO     | [data] copytool_out thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:08,588 | INFO     | [job] validate thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:08,602 | INFO     | [payload] control thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:08,799 | INFO     | [job] control thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:08,822 | INFO     | [payload] failed_post thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:11,702 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:16,694 | INFO     | job.realtimelogging is not enabled
[2025-10-07 20:21:55] 2025-10-08 00:21:17,699 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 20:21:55] 2025-10-08 00:21:36,555 | INFO     | PID=1138441 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 20:21:55] 2025-10-08 00:21:36,555 | INFO     | .. there are 7 such processes running
[2025-10-07 20:21:55] 2025-10-08 00:21:36,555 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 20:21:55] 2025-10-08 00:21:36,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 20:21:55] 2025-10-08 00:21:36,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 20:21:55] 2025-10-08 00:21:37,635 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-07 20:21:55] 2025-10-08 00:21:48,626 | INFO     | [monitor] cgroup control has ended
[2025-10-07 20:21:55] 2025-10-08 00:21:50,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126640301586240)>', '<ExcThread(monitor, started 126639576962816)>']
[2025-10-07 20:21:55] 2025-10-08 00:21:50,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 20:21:55] 2025-10-08 00:21:50,614 | INFO     | [monitor] control thread has ended
[2025-10-07 20:21:55] 2025-10-08 00:21:55,458 | INFO     | all workflow threads have been joined
[2025-10-07 20:21:55] 2025-10-08 00:21:55,458 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 20:21:55] 2025-10-08 00:21:55,458 | INFO     | traces error code: 0
[2025-10-07 20:21:55] 2025-10-08 00:21:55,459 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 20:21:55] 2025-10-08 00:21:55,527 [wrapper] ==== pilot stdout END ====
[2025-10-07 20:21:55] 2025-10-08 00:21:55,529 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 20:21:55] 2025-10-08 00:21:55,531 [wrapper] pilotpid: 1138441
[2025-10-07 20:21:55] 2025-10-08 00:21:55,532 [wrapper] Pilot exit status: 0
[2025-10-07 20:21:55] 2025-10-08 00:21:55,540 [wrapper] pandaids: 6834950512
[2025-10-07 20:21:55] 2025-10-08 00:21:55,576 [wrapper] cleanup supervisor_pilot 1320702 1138442
[2025-10-07 20:21:55] 2025-10-08 00:21:55,578 [wrapper] Test setup, not cleaning
[2025-10-07 20:21:55] 2025-10-08 00:21:55,580 [wrapper] apfmon messages muted
[2025-10-07 20:21:55] 2025-10-08 00:21:55,582 [wrapper] ==== wrapper stdout END ====
[2025-10-07 20:21:55] 2025-10-08 00:21:55,584 [wrapper] ==== wrapper stderr END ====
[2025-10-07 20:21:55]  *** Error codes and diagnostics ***
[2025-10-07 20:21:55]     "exeErrorCode": 0,
[2025-10-07 20:21:55]     "exeErrorDiag": "",
[2025-10-07 20:21:55]     "pilotErrorCode": 0,
[2025-10-07 20:21:55]     "pilotErrorDiag": "",
[2025-10-07 20:21:55]  *** Listing of results directory ***
[2025-10-07 20:21:55] total 385724
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc    552446 Oct  7 09:09 pilot3.tar.gz
[2025-10-07 20:21:55] -rwx------ 1 boinc boinc     36292 Oct  7 09:36 runpilot2-wrapper.sh
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc      5112 Oct  7 09:36 queuedata.json
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc       100 Oct  7 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 20:21:55] -rwxr-xr-x 1 boinc boinc      7986 Oct  7 18:51 run_atlas
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc       105 Oct  7 18:51 job.xml
[2025-10-07 20:21:55] -rw-r--r-- 2 boinc boinc     15120 Oct  7 18:51 start_atlas.sh
[2025-10-07 20:21:55] drwxrwx--x 2 boinc boinc      4096 Oct  7 18:51 shared
[2025-10-07 20:21:55] -rw-r--r-- 2 boinc boinc    565604 Oct  7 18:51 input.tar.gz
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc      9449 Oct  7 18:51 init_data.xml
[2025-10-07 20:21:55] -rw-r--r-- 2 boinc boinc 215714531 Oct  7 18:51 EVNT.46376901._003814.pool.root.1
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc         0 Oct  7 18:51 boinc_lockfile
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc      2519 Oct  7 18:51 pandaJob.out
[2025-10-07 20:21:55] -rw------- 1 boinc boinc    979864 Oct  7 18:51 agis_schedconf.cvmfs.json
[2025-10-07 20:21:55] -rw------- 1 boinc boinc   1560401 Oct  7 18:51 agis_ddmendpoints.agis.ALL.json
[2025-10-07 20:21:55] drwx------ 4 boinc boinc      4096 Oct  7 18:51 pilot3
[2025-10-07 20:21:55] -rw------- 1 boinc boinc        95 Oct  7 20:20 pilot_heartbeat.json
[2025-10-07 20:21:55] -rw------- 1 boinc boinc 173252925 Oct  7 20:20 HITS.46376905._135012.pool.root.1
[2025-10-07 20:21:55] -rw------- 1 boinc boinc      1022 Oct  7 20:20 memory_monitor_summary.json
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc       529 Oct  7 20:20 boinc_task_state.xml
[2025-10-07 20:21:55] -rw------- 1 boinc boinc    263002 Oct  7 20:21 log.46376905._135012.job.log.tgz.1
[2025-10-07 20:21:55] -rw------- 1 boinc boinc      7743 Oct  7 20:21 heartbeat.json
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc      8192 Oct  7 20:21 boinc_mmap_file
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc        27 Oct  7 20:21 wrapper_checkpoint.txt
[2025-10-07 20:21:55] -rw------- 1 boinc boinc      4903 Oct  7 20:21 pilotlog.txt
[2025-10-07 20:21:55] -rw------- 1 boinc boinc    791507 Oct  7 20:21 log.46376905._135012.job.log.1
[2025-10-07 20:21:55] -rw------- 1 boinc boinc       357 Oct  7 20:21 output.list
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc       620 Oct  7 20:21 runtime_log
[2025-10-07 20:21:55] -rw------- 1 boinc boinc   1075200 Oct  7 20:21 result.tar.gz
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc      8764 Oct  7 20:21 runtime_log.err
[2025-10-07 20:21:55] -rw------- 1 boinc boinc       643 Oct  7 20:21 7mtKDmm2MQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKBXNDmiaLdQm.diag
[2025-10-07 20:21:55] -rw-r--r-- 1 boinc boinc     22561 Oct  7 20:21 stderr.txt
[2025-10-07 20:21:55] HITS file was successfully produced:
[2025-10-07 20:21:55] -rw------- 1 boinc boinc 173252925 Oct  7 20:20 shared/HITS.pool.root.1
[2025-10-07 20:21:55]  *** Contents of shared directory: ***
[2025-10-07 20:21:55] total 381488
[2025-10-07 20:21:55] -rw-r--r-- 2 boinc boinc     15120 Oct  7 18:51 start_atlas.sh
[2025-10-07 20:21:55] -rw-r--r-- 2 boinc boinc    565604 Oct  7 18:51 input.tar.gz
[2025-10-07 20:21:55] -rw-r--r-- 2 boinc boinc 215714531 Oct  7 18:51 ATLAS.root_0
[2025-10-07 20:21:55] -rw------- 1 boinc boinc 173252925 Oct  7 20:20 HITS.pool.root.1
[2025-10-07 20:21:55] -rw------- 1 boinc boinc   1075200 Oct  7 20:21 result.tar.gz
20:21:56 (1134614): run_atlas exited; CPU time 20747.177016
20:21:56 (1134614): called boinc_finish(0)

</stderr_txt>
]]>

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