Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:47:24 (417924): wrapper (7.7.26015): starting
02:47:24 (417924): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 02:47:24] Arguments: --nthreads 12
[2025-10-08 02:47:24] Threads: 12
[2025-10-08 02:47:24] Checking for CVMFS
[2025-10-08 02:47:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 02:47:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 02:47:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 02:47:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 02:47:26] 2.13.2.0 8715 22587 227752 151452 2 404 27569466 46080001 49582 130560 0 153689711 99.861 52761807 21487 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-08 02:47:26] CVMFS is ok
[2025-10-08 02:47:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 02:47:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 02:47:26] Further information can be found at the LHC@home message board.
[2025-10-08 02:47:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 02:47:26] Checking for apptainer binary...
[2025-10-08 02:47:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 02:47:26] Running /usr/bin/apptainer --version
[2025-10-08 02:47:26] apptainer version 1.4.2-1.el9
[2025-10-08 02:47:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 02:47:27] mff2104.farm.particle.cz
[2025-10-08 02:47:27] apptainer works
[2025-10-08 02:47:27] Set ATHENA_PROC_NUMBER=12
[2025-10-08 02:47:27] Set ATHENA_CORE_NUMBER=12
[2025-10-08 02:47:27] Starting ATLAS job with PandaID=6833429279
[2025-10-08 02:47:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 04:12:52]  *** The last 200 lines of the pilot log: ***
[2025-10-08 04:12:52] 2025-10-08 02:10:39,420 | INFO     | monitor loop #352: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:39,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:41,006 | INFO     | time since job start (4901s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:41,926 | INFO     | monitor loop #353: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:41,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:43,013 | INFO     | time since job start (4903s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:44,433 | INFO     | monitor loop #354: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:44,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:45,020 | INFO     | time since job start (4905s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:46,942 | INFO     | monitor loop #355: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:46,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:47,027 | INFO     | time since job start (4907s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:49,034 | INFO     | time since job start (4909s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:49,449 | INFO     | monitor loop #356: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:49,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:51,041 | INFO     | time since job start (4911s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:51,958 | INFO     | monitor loop #357: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:51,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:53,131 | INFO     | PID=443795 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 04:12:52] 2025-10-08 02:10:53,131 | INFO     | .. there are 82 such processes running
[2025-10-08 04:12:52] 2025-10-08 02:10:54,132 | INFO     | time since job start (4914s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:54,476 | INFO     | monitor loop #358: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:54,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:56,139 | INFO     | time since job start (4916s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:56,982 | INFO     | monitor loop #359: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:56,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:10:58,147 | INFO     | time since job start (4918s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:10:59,487 | INFO     | monitor loop #360: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:10:59,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:11:00,154 | INFO     | time since job start (4920s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:11:01,992 | INFO     | monitor loop #361: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:11:01,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:11:02,161 | INFO     | time since job start (4922s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:11:04,169 | INFO     | time since job start (4924s) is within the limit (172800.0s)
[2025-10-08 04:12:52] 2025-10-08 02:11:04,497 | INFO     | monitor loop #362: job 0:6833429279 is in state 'finished'
[2025-10-08 04:12:52] 2025-10-08 02:11:04,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 04:12:52] 2025-10-08 02:11:04,938 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 04:12:52] 2025-10-08 02:11:04,966 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2863.640697916666
[2025-10-08 04:12:52] 2025-10-08 02:11:04,994 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-6833429279/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 04:12:52] 2025-10-08 02:11:04,996 | INFO     | extracted standard info from prmon json
[2025-10-08 04:12:52] 2025-10-08 02:11:04,996 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 04:12:52] 2025-10-08 02:11:04,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 04:12:52] 2025-10-08 02:11:04,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 04:12:52] 2025-10-08 02:11:04,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 04:12:52] 2025-10-08 02:11:04,998 | INFO     | fitting pss+swap vs Time
[2025-10-08 04:12:52] 2025-10-08 02:11:04,998 | INFO     | sum of square deviations: 106334255.4857144
[2025-10-08 04:12:52] 2025-10-08 02:11:04,999 | INFO     | sum of deviations: 3634942574.485714
[2025-10-08 04:12:52] 2025-10-08 02:11:04,999 | INFO     | mean x: 1759887143.5142858
[2025-10-08 04:12:52] 2025-10-08 02:11:04,999 | INFO     | mean y: 2658696.5142857144
[2025-10-08 04:12:52] 2025-10-08 02:11:04,999 | INFO     | -- intersect: -60157528394.93106
[2025-10-08 04:12:52] 2025-10-08 02:11:04,999 | INFO     | intersect: -60157528394.93106
[2025-10-08 04:12:52] 2025-10-08 02:11:05,000 | INFO     | chi2: 0.23746188840184393
[2025-10-08 04:12:52] 2025-10-08 02:11:05,000 | INFO     | -- intersect: -60157528394.93106
[2025-10-08 04:12:52] 2025-10-08 02:11:05,000 | INFO     | current memory leak: 34.18 B/s (using 70 data points, chi2=0.24)
[2025-10-08 04:12:52] 2025-10-08 02:11:05,000 | INFO     | could have reported an average CPU frequency of 2838 MHz (6 samples)
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | ..............................
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . Timing measurements:
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . get job = 0 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . initial setup = 5 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . payload setup = 57 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . stage-in = 0 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . payload execution = 4723 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . stage-out = 1 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | . log creation = 0 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,001 | INFO     | ..............................
[2025-10-08 04:12:52] 2025-10-08 02:11:05,117 | INFO     | 
[2025-10-08 04:12:52] 2025-10-08 02:11:05,118 | INFO     | job summary report
[2025-10-08 04:12:52] 2025-10-08 02:11:05,118 | INFO     | --------------------------------------------------
[2025-10-08 04:12:52] 2025-10-08 02:11:05,118 | INFO     | PanDA job id: 6833429279
[2025-10-08 04:12:52] 2025-10-08 02:11:05,118 | INFO     | task id: 46376905
[2025-10-08 04:12:52] 2025-10-08 02:11:05,118 | INFO     | errors: (none)
[2025-10-08 04:12:52] 2025-10-08 02:11:05,118 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 04:12:52] 2025-10-08 02:11:05,122 | INFO     | pilot state: finished 
[2025-10-08 04:12:52] 2025-10-08 02:11:05,122 | INFO     | transexitcode: 0
[2025-10-08 04:12:52] 2025-10-08 02:11:05,122 | INFO     | exeerrorcode: 0
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | exeerrordiag: 
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | exitcode: 0
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | exitmsg: OK
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | cpuconsumptiontime: 32790 s
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | nevents: 400
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | neventsw: 0
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | pid: 492681
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | pgrp: 492681
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | corecount: 12
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | event service: False
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | sizes: {0: 2348650, 1: 2348849, 12: 2348849, 23: 2348877, 34: 2348905, 41: 2349195, 44: 2349351, 4785: 2375675, 4787: 2384675, 4790: 2384731, 4837: 2384925}
[2025-10-08 04:12:52] 2025-10-08 02:11:05,123 | INFO     | --------------------------------------------------
[2025-10-08 04:12:52] 2025-10-08 02:11:05,124 | INFO     | 
[2025-10-08 04:12:52] 2025-10-08 02:11:05,124 | INFO     | executing command: ls -lF /scratch/.boinc/slots/6
[2025-10-08 04:12:52] 2025-10-08 02:11:05,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 04:12:52] 2025-10-08 02:11:05,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 04:12:52] 2025-10-08 02:11:05,333 | INFO     | job 6833429279 has completed (purged errors)
[2025-10-08 04:12:52] 2025-10-08 02:11:05,333 | INFO     | overall cleanup function is called
[2025-10-08 04:12:52] 2025-10-08 02:11:06,348 | INFO     | --- collectZombieJob: --- 10, [492681]
[2025-10-08 04:12:52] 2025-10-08 02:11:06,348 | INFO     | zombie collector waiting for pid 492681
[2025-10-08 04:12:52] 2025-10-08 02:11:06,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 04:12:52] 2025-10-08 02:11:06,349 | INFO     | collected zombie processes
[2025-10-08 04:12:52] 2025-10-08 02:11:06,349 | INFO     | will attempt to kill all subprocesses of pid=492681
[2025-10-08 04:12:52] 2025-10-08 02:11:07,203 | INFO     | process IDs to be killed: [492681] (in reverse order)
[2025-10-08 04:12:52] 2025-10-08 02:11:07,802 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 04:12:52] 2025-10-08 02:11:07,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 04:12:52] 2025-10-08 02:11:07,856 | INFO     | did not find any defunct processes belonging to 492681
[2025-10-08 04:12:52] 2025-10-08 02:11:07,894 | INFO     | did not find any defunct processes belonging to 492681
[2025-10-08 04:12:52] 2025-10-08 02:11:07,895 | INFO     | ready for new job
[2025-10-08 04:12:52] 2025-10-08 02:11:07,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 04:12:52] 2025-10-08 02:11:07,897 | INFO     | ***************************************
[2025-10-08 04:12:52] 2025-10-08 02:11:07,897 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 04:12:52] 2025-10-08 02:11:07,897 | INFO     | ***************************************
[2025-10-08 04:12:52] 2025-10-08 02:11:07,897 | INFO     | 
[2025-10-08 04:12:52] 2025-10-08 02:11:07,903 | INFO     | architecture information:
[2025-10-08 04:12:52] 2025-10-08 02:11:07,903 | INFO     | executing command: cat /etc/os-release
[2025-10-08 04:12:52] 2025-10-08 02:11:08,008 | INFO     | cat /etc/os-release:
[2025-10-08 04:12:52] NAME="CentOS Linux"
[2025-10-08 04:12:52] VERSION="7 (Core)"
[2025-10-08 04:12:52] ID="centos"
[2025-10-08 04:12:52] ID_LIKE="rhel fedora"
[2025-10-08 04:12:52] VERSION_ID="7"
[2025-10-08 04:12:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 04:12:52] ANSI_COLOR="0;31"
[2025-10-08 04:12:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 04:12:52] HOME_URL="https://www.centos.org/"
[2025-10-08 04:12:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 04:12:52] 
[2025-10-08 04:12:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 04:12:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 04:12:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 04:12:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 04:12:52] 
[2025-10-08 04:12:52] 2025-10-08 02:11:08,008 | INFO     | ***************************************
[2025-10-08 04:12:52] 2025-10-08 02:11:08,511 | INFO     | executing command: df -mP /scratch/.boinc/slots/6
[2025-10-08 04:12:52] 2025-10-08 02:11:08,556 | INFO     | sufficient remaining disk space (1649700503552 B)
[2025-10-08 04:12:52] 2025-10-08 02:11:08,557 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 04:12:52] 2025-10-08 02:11:08,557 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 04:12:52] 2025-10-08 02:11:08,557 | INFO     | update_server=False
[2025-10-08 04:12:52] 2025-10-08 02:11:08,557 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 04:12:52] 2025-10-08 02:11:08,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 04:12:52] 2025-10-08 02:11:08,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 04:12:52] 2025-10-08 02:11:08,559 | INFO     | aborting loop
[2025-10-08 04:12:52] 2025-10-08 02:11:09,274 | INFO     | all job control threads have been joined
[2025-10-08 04:12:52] 2025-10-08 02:11:09,446 | INFO     | all payload control threads have been joined
[2025-10-08 04:12:52] 2025-10-08 02:11:09,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 04:12:52] 2025-10-08 02:11:09,539 | INFO     | all data control threads have been joined
[2025-10-08 04:12:52] 2025-10-08 02:11:09,564 | INFO     | [job] job monitor thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:09,568 | INFO     | [job] retrieve thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:09,640 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:09,817 | INFO     | [job] validate thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,123 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 04:12:52] 2025-10-08 02:11:10,236 | INFO     | [payload] validate_post thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,280 | INFO     | [job] control thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,370 | INFO     | [data] copytool_in thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,452 | INFO     | [payload] control thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,543 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,544 | INFO     | [data] control thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,567 | INFO     | [data] copytool_out thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:10,644 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:11,142 | INFO     | [job] queue monitor thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:11,162 | INFO     | [payload] failed_post thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:13,471 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 04:12:52] 2025-10-08 02:11:38,108 | INFO     | PID=443795 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-08 04:12:52] 2025-10-08 02:11:38,108 | INFO     | .. there are 82 such processes running
[2025-10-08 04:12:52] 2025-10-08 02:11:38,109 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 04:12:52] 2025-10-08 02:11:38,109 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 04:12:52] 2025-10-08 02:11:38,109 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 04:12:52] 2025-10-08 02:12:08,331 | INFO     | [monitor] cgroup control has ended
[2025-10-08 04:12:52] 2025-10-08 02:12:08,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031070717760)>', '<ExcThread(monitor, started 140030714550016)>']
[2025-10-08 04:12:52] 2025-10-08 02:12:09,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 04:12:52] 2025-10-08 02:12:09,294 | INFO     | [monitor] control thread has ended
[2025-10-08 04:12:52] 2025-10-08 02:12:13,582 | INFO     | all workflow threads have been joined
[2025-10-08 04:12:52] 2025-10-08 02:12:13,585 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 04:12:52] 2025-10-08 02:12:13,585 | INFO     | traces error code: 0
[2025-10-08 04:12:52] 2025-10-08 02:12:13,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 04:12:52] 2025-10-08 02:12:13,846 [wrapper] ==== pilot stdout END ====
[2025-10-08 04:12:52] 2025-10-08 02:12:13,891 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 04:12:52] 2025-10-08 02:12:13,926 [wrapper] pilotpid: 443795
[2025-10-08 04:12:52] 2025-10-08 02:12:13,967 [wrapper] Pilot exit status: 0
[2025-10-08 04:12:52] 2025-10-08 02:12:14,150 [wrapper] pandaids: 6833429279
[2025-10-08 04:12:52] 2025-10-08 02:12:14,650 [wrapper] cleanup supervisor_pilot  999461 443796
[2025-10-08 04:12:52] 2025-10-08 02:12:14,655 [wrapper] Test setup, not cleaning
[2025-10-08 04:12:52] 2025-10-08 02:12:14,663 [wrapper] apfmon messages muted
[2025-10-08 04:12:52] 2025-10-08 02:12:14,699 [wrapper] ==== wrapper stdout END ====
[2025-10-08 04:12:52] 2025-10-08 02:12:14,727 [wrapper] ==== wrapper stderr END ====
[2025-10-08 04:12:52]  *** Error codes and diagnostics ***
[2025-10-08 04:12:52]     "exeErrorCode": 0,
[2025-10-08 04:12:52]     "exeErrorDiag": "",
[2025-10-08 04:12:52]     "pilotErrorCode": 0,
[2025-10-08 04:12:52]     "pilotErrorDiag": "",
[2025-10-08 04:12:52]  *** Listing of results directory ***
[2025-10-08 04:12:52] total 389336
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc    552446 Oct  7 12:41 pilot3.tar.gz
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc      5112 Oct  7 12:46 queuedata.json
[2025-10-08 04:12:52] -rwx------ 1 boinc boinc     36292 Oct  7 12:48 runpilot2-wrapper.sh
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc       100 Oct  8 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 04:12:52] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 02:47 run_atlas
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc       105 Oct  8 02:47 job.xml
[2025-10-08 04:12:52] -rw-r--r-- 2 boinc boinc 214278379 Oct  8 02:47 EVNT.46376901._004952.pool.root.1
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc      6665 Oct  8 02:47 init_data.xml
[2025-10-08 04:12:52] -rw-r--r-- 2 boinc boinc     15120 Oct  8 02:47 start_atlas.sh
[2025-10-08 04:12:52] drwxrwx--x 2 boinc boinc      4096 Oct  8 02:47 shared
[2025-10-08 04:12:52] -rw-r--r-- 2 boinc boinc    565600 Oct  8 02:47 input.tar.gz
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc         0 Oct  8 02:47 boinc_lockfile
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc      2521 Oct  8 02:47 pandaJob.out
[2025-10-08 04:12:52] -rw------- 1 boinc boinc    979833 Oct  8 02:48 agis_schedconf.cvmfs.json
[2025-10-08 04:12:52] -rw------- 1 boinc boinc   1560401 Oct  8 02:48 agis_ddmendpoints.agis.ALL.json
[2025-10-08 04:12:52] drwx------ 4 boinc boinc      4096 Oct  8 02:49 pilot3
[2025-10-08 04:12:52] -rw------- 1 boinc boinc 178390942 Oct  8 04:09 HITS.46376905._132955.pool.root.1
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc       529 Oct  8 04:09 boinc_task_state.xml
[2025-10-08 04:12:52] -rw------- 1 boinc boinc      1026 Oct  8 04:10 memory_monitor_summary.json
[2025-10-08 04:12:52] -rw------- 1 boinc boinc    377393 Oct  8 04:10 log.46376905._132955.job.log.tgz.1
[2025-10-08 04:12:52] -rw------- 1 boinc boinc      7790 Oct  8 04:11 heartbeat.json
[2025-10-08 04:12:52] -rw------- 1 boinc boinc        95 Oct  8 04:11 pilot_heartbeat.json
[2025-10-08 04:12:52] -rw------- 1 boinc boinc      4826 Oct  8 04:12 pilotlog.txt
[2025-10-08 04:12:52] -rw------- 1 boinc boinc    676755 Oct  8 04:12 log.46376905._132955.job.log.1
[2025-10-08 04:12:52] -rw------- 1 boinc boinc       357 Oct  8 04:12 output.list
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc       620 Oct  8 04:12 runtime_log
[2025-10-08 04:12:52] -rw------- 1 boinc boinc   1075200 Oct  8 04:12 result.tar.gz
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc      8764 Oct  8 04:12 runtime_log.err
[2025-10-08 04:12:52] -rw------- 1 boinc boinc       663 Oct  8 04:12 avPMDmCQKQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNoWNDmaYjqun.diag
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc        26 Oct  8 04:12 wrapper_checkpoint.txt
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc      8192 Oct  8 04:12 boinc_mmap_file
[2025-10-08 04:12:52] -rw-r--r-- 1 boinc boinc     22384 Oct  8 04:12 stderr.txt
[2025-10-08 04:12:52] HITS file was successfully produced:
[2025-10-08 04:12:52] -rw------- 1 boinc boinc 178390942 Oct  8 04:09 shared/HITS.pool.root.1
[2025-10-08 04:12:52]  *** Contents of shared directory: ***
[2025-10-08 04:12:52] total 385104
[2025-10-08 04:12:52] -rw-r--r-- 2 boinc boinc 214278379 Oct  8 02:47 ATLAS.root_0
[2025-10-08 04:12:52] -rw-r--r-- 2 boinc boinc     15120 Oct  8 02:47 start_atlas.sh
[2025-10-08 04:12:52] -rw-r--r-- 2 boinc boinc    565600 Oct  8 02:47 input.tar.gz
[2025-10-08 04:12:52] -rw------- 1 boinc boinc 178390942 Oct  8 04:09 HITS.pool.root.1
[2025-10-08 04:12:52] -rw------- 1 boinc boinc   1075200 Oct  8 04:12 result.tar.gz
04:12:54 (417924): run_atlas exited; CPU time 33057.760815
04:12:54 (417924): called boinc_finish(0)

</stderr_txt>
]]>

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