Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:17:34 (31422): wrapper (7.7.26015): starting
03:17:34 (31422): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 03:17:34] Arguments: --nthreads 8
[2025-10-08 03:17:34] Threads: 8
[2025-10-08 03:17:34] Checking for CVMFS
[2025-10-08 03:17:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 03:17:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 03:17:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 03:17:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 03:17:37] 2.11.2.0 13026 214104 138416 151453 0 60 23397658 25165824 4632 130560 0 117943584 99.887 63393879 3621 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 03:17:37] CVMFS is ok
[2025-10-08 03:17:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 03:17:37] Checking for apptainer binary...
[2025-10-08 03:17:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 03:17:37] Running /usr/bin/apptainer --version
[2025-10-08 03:17:37] apptainer version 1.3.2-1.el7
[2025-10-08 03:17:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 03:17:44] cg-vwn329.simple-grid.lan
[2025-10-08 03:17:44] apptainer works
[2025-10-08 03:17:44] Set ATHENA_PROC_NUMBER=8
[2025-10-08 03:17:44] Set ATHENA_CORE_NUMBER=8
[2025-10-08 03:17:44] Starting ATLAS job with PandaID=6834756029
[2025-10-08 03:17:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 07:11:49]  *** The last 200 lines of the pilot log: ***
[2025-10-08 07:11:49] 2025-10-08 05:10:46,569 | INFO     | mean x: 1759893548.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,569 | INFO     | mean y: 2455914.0414746543
[2025-10-08 07:11:49] 2025-10-08 05:10:46,569 | INFO     | -- intersect: -4130316117.592001
[2025-10-08 07:11:49] 2025-10-08 05:10:46,569 | INFO     | intersect: -4130316117.592001
[2025-10-08 07:11:49] 2025-10-08 05:10:46,569 | INFO     | chi2: 5.4233799155012266
[2025-10-08 07:11:49] 2025-10-08 05:10:46,570 | INFO     | sum of square deviations: 2954447953.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,572 | INFO     | sum of deviations: 35868630312.999985
[2025-10-08 07:11:49] 2025-10-08 05:10:46,572 | INFO     | mean x: 1759893395.5
[2025-10-08 07:11:49] 2025-10-08 05:10:46,572 | INFO     | mean y: 2475886.0943396227
[2025-10-08 07:11:49] 2025-10-08 05:10:46,572 | INFO     | -- intersect: -21363602175.758648
[2025-10-08 07:11:49] 2025-10-08 05:10:46,572 | INFO     | intersect: -21363602175.758648
[2025-10-08 07:11:49] 2025-10-08 05:10:46,573 | INFO     | chi2: 3.9099611747898764
[2025-10-08 07:11:49] 2025-10-08 05:10:46,573 | INFO     | current chi2=3.9099611747898764 (change=27.90545313607226 %)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,573 | INFO     | sum of square deviations: 2750295288.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,575 | INFO     | sum of deviations: 35208234552.99999
[2025-10-08 07:11:49] 2025-10-08 05:10:46,575 | INFO     | mean x: 1759893243.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,575 | INFO     | mean y: 2475392.7536231885
[2025-10-08 07:11:49] 2025-10-08 05:10:46,576 | INFO     | -- intersect: -22527008753.235214
[2025-10-08 07:11:49] 2025-10-08 05:10:46,576 | INFO     | intersect: -22527008753.235214
[2025-10-08 07:11:49] 2025-10-08 05:10:46,576 | INFO     | chi2: 3.9152250163288134
[2025-10-08 07:11:49] 2025-10-08 05:10:46,576 | INFO     | current chi2=3.9152250163288134 (change=-0.13462644010064576 %)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,576 | INFO     | right removable region: 206
[2025-10-08 07:11:49] 2025-10-08 05:10:46,577 | INFO     | sum of square deviations: 2954447953.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,579 | INFO     | sum of deviations: -57008449018.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,579 | INFO     | mean x: 1759893700.5
[2025-10-08 07:11:49] 2025-10-08 05:10:46,579 | INFO     | mean y: 2501709.0283018867
[2025-10-08 07:11:49] 2025-10-08 05:10:46,579 | INFO     | -- intersect: 33961065846.256687
[2025-10-08 07:11:49] 2025-10-08 05:10:46,579 | INFO     | intersect: 33961065846.256687
[2025-10-08 07:11:49] 2025-10-08 05:10:46,580 | INFO     | chi2: 1.909303917061335
[2025-10-08 07:11:49] 2025-10-08 05:10:46,580 | INFO     | current chi2=1.909303917061335 (change=64.7949443555647 %)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,580 | INFO     | sum of square deviations: 2750295288.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,582 | INFO     | sum of deviations: -65457727805.00001
[2025-10-08 07:11:49] 2025-10-08 05:10:46,582 | INFO     | mean x: 1759893853.0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,582 | INFO     | mean y: 2507969.3574879225
[2025-10-08 07:11:49] 2025-10-08 05:10:46,582 | INFO     | -- intersect: 41888429564.030525
[2025-10-08 07:11:49] 2025-10-08 05:10:46,582 | INFO     | intersect: 41888429564.030525
[2025-10-08 07:11:49] 2025-10-08 05:10:46,583 | INFO     | chi2: 1.794502436626533
[2025-10-08 07:11:49] 2025-10-08 05:10:46,583 | INFO     | current chi2=1.794502436626533 (change=6.012740004823139 %)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,583 | INFO     | left removable region: 20
[2025-10-08 07:11:49] 2025-10-08 05:10:46,584 | INFO     | sum of square deviations: 1995283922.5
[2025-10-08 07:11:49] 2025-10-08 05:10:46,585 | INFO     | sum of deviations: -23113878958.500004
[2025-10-08 07:11:49] 2025-10-08 05:10:46,585 | INFO     | mean x: 1759893822.5
[2025-10-08 07:11:49] 2025-10-08 05:10:46,585 | INFO     | mean y: 2520157.38172043
[2025-10-08 07:11:49] 2025-10-08 05:10:46,585 | INFO     | -- intersect: 20389580031.100967
[2025-10-08 07:11:49] 2025-10-08 05:10:46,586 | INFO     | intersect: 20389580031.100967
[2025-10-08 07:11:49] 2025-10-08 05:10:46,586 | INFO     | chi2: 0.14529537979655185
[2025-10-08 07:11:49] 2025-10-08 05:10:46,586 | INFO     | -- intersect: 20389580031.100967
[2025-10-08 07:11:49] 2025-10-08 05:10:46,586 | INFO     | current memory leak: -11.58 B/s (using 186 data points, chi2=0.15)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,587 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,587 | INFO     | ..............................
[2025-10-08 07:11:49] 2025-10-08 05:10:46,587 | INFO     | . Timing measurements:
[2025-10-08 07:11:49] 2025-10-08 05:10:46,587 | INFO     | . get job = 0 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,588 | INFO     | . initial setup = 10 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,588 | INFO     | . payload setup = 139 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,588 | INFO     | . stage-in = 0 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,588 | INFO     | . payload execution = 13352 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,588 | INFO     | . stage-out = 3 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,588 | INFO     | . log creation = 1 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,588 | INFO     | ..............................
[2025-10-08 07:11:49] 2025-10-08 05:10:46,721 | INFO     | time since job start (13770s) is within the limit (172800.0s)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,828 | INFO     | 
[2025-10-08 07:11:49] 2025-10-08 05:10:46,828 | INFO     | job summary report
[2025-10-08 07:11:49] 2025-10-08 05:10:46,828 | INFO     | --------------------------------------------------
[2025-10-08 07:11:49] 2025-10-08 05:10:46,828 | INFO     | PanDA job id: 6834756029
[2025-10-08 07:11:49] 2025-10-08 05:10:46,828 | INFO     | task id: 46376905
[2025-10-08 07:11:49] 2025-10-08 05:10:46,828 | INFO     | errors: (none)
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | pilot state: finished 
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | transexitcode: 0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | exeerrorcode: 0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | exeerrordiag: 
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | exitcode: 0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | exitmsg: OK
[2025-10-08 07:11:49] 2025-10-08 05:10:46,829 | INFO     | cpuconsumptiontime: 49838 s
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | nevents: 400
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | neventsw: 0
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | pid: 9353
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | pgrp: 9353
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | corecount: 8
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | event service: False
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | sizes: {0: 2347942, 1: 2348798, 2: 2348798, 12: 2348826, 23: 2348854, 34: 2348882, 45: 2349038, 55: 2349066, 66: 2349094, 77: 2349122, 87: 2349178, 91: 2349748, 98
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | --------------------------------------------------
[2025-10-08 07:11:49] 2025-10-08 05:10:46,830 | INFO     | 
[2025-10-08 07:11:49] 2025-10-08 05:10:46,831 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-10-08 07:11:49] 2025-10-08 05:10:47,382 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,383 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,383 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 07:11:49] 2025-10-08 05:10:47,384 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 07:11:49] 2025-10-08 05:10:47,385 | INFO     | job 6834756029 has completed (purged errors)
[2025-10-08 07:11:49] 2025-10-08 05:10:47,385 | INFO     | overall cleanup function is called
[2025-10-08 07:11:49] 2025-10-08 05:10:47,871 | INFO     | PID=2797 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-08 07:11:49] 2025-10-08 05:10:47,871 | INFO     | .. there are 9 such processes running
[2025-10-08 07:11:49] 2025-10-08 05:10:48,394 | INFO     | --- collectZombieJob: --- 10, [9353]
[2025-10-08 07:11:49] 2025-10-08 05:10:48,394 | INFO     | zombie collector waiting for pid 9353
[2025-10-08 07:11:49] 2025-10-08 05:10:48,394 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 07:11:49] 2025-10-08 05:10:48,394 | INFO     | collected zombie processes
[2025-10-08 07:11:49] 2025-10-08 05:10:48,394 | INFO     | will attempt to kill all subprocesses of pid=9353
[2025-10-08 07:11:49] 2025-10-08 05:10:48,518 | INFO     | process IDs to be killed: [9353] (in reverse order)
[2025-10-08 07:11:49] 2025-10-08 05:10:48,894 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 07:11:49] 2025-10-08 05:10:48,895 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 07:11:49] 2025-10-08 05:10:48,898 | INFO     | did not find any defunct processes belonging to 9353
[2025-10-08 07:11:49] 2025-10-08 05:10:48,901 | INFO     | did not find any defunct processes belonging to 9353
[2025-10-08 07:11:49] 2025-10-08 05:10:48,901 | INFO     | ready for new job
[2025-10-08 07:11:49] 2025-10-08 05:10:48,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 07:11:49] 2025-10-08 05:10:48,903 | INFO     | ***************************************
[2025-10-08 07:11:49] 2025-10-08 05:10:48,903 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 07:11:49] 2025-10-08 05:10:48,904 | INFO     | ***************************************
[2025-10-08 07:11:49] 2025-10-08 05:10:48,904 | INFO     | 
[2025-10-08 07:11:49] 2025-10-08 05:10:48,904 | INFO     | pilot is running in a VM
[2025-10-08 07:11:49] 2025-10-08 05:10:48,904 | INFO     | architecture information:
[2025-10-08 07:11:49] 2025-10-08 05:10:48,905 | INFO     | executing command: cat /etc/os-release
[2025-10-08 07:11:49] 2025-10-08 05:10:49,125 | INFO     | cat /etc/os-release:
[2025-10-08 07:11:49] NAME="CentOS Linux"
[2025-10-08 07:11:49] VERSION="7 (Core)"
[2025-10-08 07:11:49] ID="centos"
[2025-10-08 07:11:49] ID_LIKE="rhel fedora"
[2025-10-08 07:11:49] VERSION_ID="7"
[2025-10-08 07:11:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 07:11:49] ANSI_COLOR="0;31"
[2025-10-08 07:11:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 07:11:49] HOME_URL="https://www.centos.org/"
[2025-10-08 07:11:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 07:11:49] 
[2025-10-08 07:11:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 07:11:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 07:11:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 07:11:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 07:11:49] 
[2025-10-08 07:11:49] 2025-10-08 05:10:49,125 | INFO     | ***************************************
[2025-10-08 07:11:49] 2025-10-08 05:10:49,629 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-10-08 07:11:49] 2025-10-08 05:10:49,784 | INFO     | sufficient remaining disk space (496308846592 B)
[2025-10-08 07:11:49] 2025-10-08 05:10:49,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 07:11:49] 2025-10-08 05:10:49,784 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 07:11:49] 2025-10-08 05:10:49,785 | INFO     | update_server=False
[2025-10-08 07:11:49] 2025-10-08 05:10:49,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 07:11:49] 2025-10-08 05:10:50,020 | INFO     | all data control threads have been joined
[2025-10-08 07:11:49] 2025-10-08 05:10:50,212 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 07:11:49] 2025-10-08 05:10:50,212 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 07:11:49] 2025-10-08 05:10:50,212 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 07:11:49] 2025-10-08 05:10:50,212 | INFO     | will abort loop
[2025-10-08 07:11:49] 2025-10-08 05:10:50,586 | INFO     | all payload control threads have been joined
[2025-10-08 07:11:49] 2025-10-08 05:10:50,679 | INFO     | all job control threads have been joined
[2025-10-08 07:11:49] 2025-10-08 05:10:50,779 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 07:11:49] 2025-10-08 05:10:50,791 | INFO     | [job] retrieve thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,026 | INFO     | [data] control thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,075 | INFO     | [payload] failed_post thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,084 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,218 | INFO     | [job] job monitor thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,450 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,592 | INFO     | [payload] control thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,686 | INFO     | [job] control thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,739 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 07:11:49] 2025-10-08 05:10:51,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 07:11:49] 2025-10-08 05:10:51,967 | INFO     | [data] copytool_in thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:51,969 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:52,072 | INFO     | [payload] validate_post thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:52,115 | INFO     | [job] validate thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:52,242 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:52,745 | INFO     | [job] queue monitor thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:52,787 | INFO     | [data] copytool_out thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:10:55,787 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 07:11:49] 2025-10-08 05:11:20,083 | INFO     | PID=2797 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-08 07:11:49] 2025-10-08 05:11:20,084 | INFO     | .. there are 9 such processes running
[2025-10-08 07:11:49] 2025-10-08 05:11:20,084 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 07:11:49] 2025-10-08 05:11:20,084 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 07:11:49] 2025-10-08 05:11:20,084 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 07:11:49] 2025-10-08 05:11:39,482 | INFO     | [monitor] cgroup control has ended
[2025-10-08 07:11:49] 2025-10-08 05:11:41,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140364521158464)>', '<ExcThread(monitor, started 140363473868544)>']
[2025-10-08 07:11:49] 2025-10-08 05:11:42,215 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 07:11:49] 2025-10-08 05:11:42,215 | INFO     | [monitor] control thread has ended
[2025-10-08 07:11:49] 2025-10-08 05:11:46,443 | INFO     | all workflow threads have been joined
[2025-10-08 07:11:49] 2025-10-08 05:11:46,443 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 07:11:49] 2025-10-08 05:11:46,443 | INFO     | traces error code: 0
[2025-10-08 07:11:49] 2025-10-08 05:11:46,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 07:11:49] 2025-10-08 05:11:46,680 [wrapper] ==== pilot stdout END ====
[2025-10-08 07:11:49] 2025-10-08 05:11:46,686 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 07:11:49] 2025-10-08 05:11:46,690 [wrapper] pilotpid: 2797
[2025-10-08 07:11:49] 2025-10-08 05:11:46,695 [wrapper] Pilot exit status: 0
[2025-10-08 07:11:49] 2025-10-08 05:11:46,717 [wrapper] pandaids: 6834756029
[2025-10-08 07:11:49] 2025-10-08 05:11:46,759 [wrapper] cleanup supervisor_pilot 16378 2798
[2025-10-08 07:11:49] 2025-10-08 05:11:46,772 [wrapper] Test setup, not cleaning
[2025-10-08 07:11:49] 2025-10-08 05:11:46,789 [wrapper] apfmon messages muted
[2025-10-08 07:11:49] 2025-10-08 05:11:46,803 [wrapper] ==== wrapper stdout END ====
[2025-10-08 07:11:49] 2025-10-08 05:11:46,824 [wrapper] ==== wrapper stderr END ====
[2025-10-08 07:11:49]  *** Error codes and diagnostics ***
[2025-10-08 07:11:49]     "exeErrorCode": 0,
[2025-10-08 07:11:49]     "exeErrorDiag": "",
[2025-10-08 07:11:49]     "pilotErrorCode": 0,
[2025-10-08 07:11:49]     "pilotErrorDiag": "",
[2025-10-08 07:11:49]  *** Listing of results directory ***
[2025-10-08 07:11:49] total 391068
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc    552446 Oct  7 14:52 pilot3.tar.gz
[2025-10-08 07:11:49] -rwx------. 1 boinc boinc     36292 Oct  7 14:58 runpilot2-wrapper.sh
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc      5112 Oct  7 14:58 queuedata.json
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc       100 Oct  8 03:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 07:11:49] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 03:17 run_atlas
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc       105 Oct  8 03:17 job.xml
[2025-10-08 07:11:49] -rw-r--r--. 2 boinc boinc 214492070 Oct  8 03:17 EVNT.46376901._004616.pool.root.1
[2025-10-08 07:11:49] drwxrwx--x. 2 boinc boinc        68 Oct  8 03:17 shared
[2025-10-08 07:11:49] -rw-r--r--. 2 boinc boinc    565608 Oct  8 03:17 input.tar.gz
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc      6390 Oct  8 03:17 init_data.xml
[2025-10-08 07:11:49] -rw-r--r--. 2 boinc boinc     15120 Oct  8 03:17 start_atlas.sh
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc         0 Oct  8 03:17 boinc_lockfile
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc      2521 Oct  8 03:17 pandaJob.out
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc    979833 Oct  8 03:21 agis_schedconf.cvmfs.json
[2025-10-08 07:11:49] drwx------. 4 boinc boinc      4096 Oct  8 03:21 pilot3
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc 177533349 Oct  8 07:07 HITS.46376905._134791.pool.root.1
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc       531 Oct  8 07:07 boinc_task_state.xml
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc      1018 Oct  8 07:09 memory_monitor_summary.json
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc   1560401 Oct  8 07:09 agis_ddmendpoints.agis.ALL.json
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc    440172 Oct  8 07:09 log.46376905._134791.job.log.tgz.1
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc        95 Oct  8 07:10 pilot_heartbeat.json
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc      7785 Oct  8 07:10 heartbeat.json
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc      8192 Oct  8 07:11 boinc_mmap_file
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc        28 Oct  8 07:11 wrapper_checkpoint.txt
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc      5069 Oct  8 07:11 pilotlog.txt
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc   1832633 Oct  8 07:11 log.46376905._134791.job.log.1
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc       357 Oct  8 07:11 output.list
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc       620 Oct  8 07:11 runtime_log
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc   2293760 Oct  8 07:11 result.tar.gz
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc      8703 Oct  8 07:11 runtime_log.err
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc       656 Oct  8 07:11 3ipNDmcRMQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmYiLMDmLUQEqn.diag
[2025-10-08 07:11:49] -rw-r--r--. 1 boinc boinc     20806 Oct  8 07:11 stderr.txt
[2025-10-08 07:11:49] HITS file was successfully produced:
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc 177533349 Oct  8 07:07 shared/HITS.pool.root.1
[2025-10-08 07:11:49]  *** Contents of shared directory: ***
[2025-10-08 07:11:49] total 385656
[2025-10-08 07:11:49] -rw-r--r--. 2 boinc boinc 214492070 Oct  8 03:17 ATLAS.root_0
[2025-10-08 07:11:49] -rw-r--r--. 2 boinc boinc    565608 Oct  8 03:17 input.tar.gz
[2025-10-08 07:11:49] -rw-r--r--. 2 boinc boinc     15120 Oct  8 03:17 start_atlas.sh
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc 177533349 Oct  8 07:07 HITS.pool.root.1
[2025-10-08 07:11:49] -rw-------. 1 boinc boinc   2293760 Oct  8 07:11 result.tar.gz
07:11:51 (31422): run_atlas exited; CPU time 50025.207638
07:11:51 (31422): called boinc_finish(0)

</stderr_txt>
]]>

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