Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:38:34 (13440): wrapper (7.7.26015): starting
02:38:34 (13440): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 02:38:34] Arguments: --nthreads 8
[2025-10-08 02:38:34] Threads: 8
[2025-10-08 02:38:34] Checking for CVMFS
[2025-10-08 02:38:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 02:38:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 02:38:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 02:38:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 02:38:37] 2.11.2.0 15701 18037 82180 151452 3 61 16298360 25165825 4632 130560 0 5317523 99.882 1780120 1648 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 02:38:37] CVMFS is ok
[2025-10-08 02:38:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 02:38:37] Checking for apptainer binary...
[2025-10-08 02:38:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 02:38:37] Running /usr/bin/apptainer --version
[2025-10-08 02:38:37] apptainer version 1.3.2-1.el7
[2025-10-08 02:38:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 02:38:42] cg-vwn419.simple-grid.lan
[2025-10-08 02:38:42] apptainer works
[2025-10-08 02:38:42] Set ATHENA_PROC_NUMBER=8
[2025-10-08 02:38:42] Set ATHENA_CORE_NUMBER=8
[2025-10-08 02:38:42] Starting ATLAS job with PandaID=6831776804
[2025-10-08 02:38:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 06:30:57]  *** The last 200 lines of the pilot log: ***
[2025-10-08 06:30:57] 2025-10-08 04:30:00,817 | INFO     | sum of deviations: 67611435163.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,817 | INFO     | mean x: 1759891167.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,817 | INFO     | mean y: 2424730.3906976744
[2025-10-08 06:30:57] 2025-10-08 04:30:00,817 | INFO     | -- intersect: -38609509503.123344
[2025-10-08 06:30:57] 2025-10-08 04:30:00,818 | INFO     | intersect: -38609509503.123344
[2025-10-08 06:30:57] 2025-10-08 04:30:00,818 | INFO     | chi2: 5.9705932702798155
[2025-10-08 06:30:57] 2025-10-08 04:30:00,818 | INFO     | sum of square deviations: 2871616632.5
[2025-10-08 06:30:57] 2025-10-08 04:30:00,820 | INFO     | sum of deviations: 80001322794.99998
[2025-10-08 06:30:57] 2025-10-08 04:30:00,820 | INFO     | mean x: 1759891014.5
[2025-10-08 06:30:57] 2025-10-08 04:30:00,820 | INFO     | mean y: 2433532.742857143
[2025-10-08 06:30:57] 2025-10-08 04:30:00,820 | INFO     | -- intersect: -49026955537.36467
[2025-10-08 06:30:57] 2025-10-08 04:30:00,820 | INFO     | intersect: -49026955537.36467
[2025-10-08 06:30:57] 2025-10-08 04:30:00,821 | INFO     | chi2: 5.255699996374833
[2025-10-08 06:30:57] 2025-10-08 04:30:00,821 | INFO     | current chi2=5.255699996374833 (change=11.973571830182268 %)
[2025-10-08 06:30:57] 2025-10-08 04:30:00,821 | INFO     | right removable region: 209
[2025-10-08 06:30:57] 2025-10-08 04:30:00,822 | INFO     | sum of square deviations: 2871616632.5
[2025-10-08 06:30:57] 2025-10-08 04:30:00,823 | INFO     | sum of deviations: -2369260496.0000057
[2025-10-08 06:30:57] 2025-10-08 04:30:00,823 | INFO     | mean x: 1759891319.5
[2025-10-08 06:30:57] 2025-10-08 04:30:00,823 | INFO     | mean y: 2475474.314285714
[2025-10-08 06:30:57] 2025-10-08 04:30:00,824 | INFO     | -- intersect: 1454494150.2594197
[2025-10-08 06:30:57] 2025-10-08 04:30:00,824 | INFO     | intersect: 1454494150.2594197
[2025-10-08 06:30:57] 2025-10-08 04:30:00,824 | INFO     | chi2: 1.6800351735692056
[2025-10-08 06:30:57] 2025-10-08 04:30:00,824 | INFO     | current chi2=1.6800351735692056 (change=71.86150358069074 %)
[2025-10-08 06:30:57] 2025-10-08 04:30:00,825 | INFO     | sum of square deviations: 2671343110.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,826 | INFO     | sum of deviations: -27386849872.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,826 | INFO     | mean x: 1759891472.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,826 | INFO     | mean y: 2494347.814634146
[2025-10-08 06:30:57] 2025-10-08 04:30:00,826 | INFO     | -- intersect: 18045060034.80985
[2025-10-08 06:30:57] 2025-10-08 04:30:00,827 | INFO     | intersect: 18045060034.80985
[2025-10-08 06:30:57] 2025-10-08 04:30:00,827 | INFO     | chi2: 0.8901920954935993
[2025-10-08 06:30:57] 2025-10-08 04:30:00,827 | INFO     | current chi2=0.8901920954935993 (change=47.013484628277055 %)
[2025-10-08 06:30:57] 2025-10-08 04:30:00,827 | INFO     | sum of square deviations: 2480604650.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,829 | INFO     | sum of deviations: -20709247856.5
[2025-10-08 06:30:57] 2025-10-08 04:30:00,829 | INFO     | mean x: 1759891624.5
[2025-10-08 06:30:57] 2025-10-08 04:30:00,829 | INFO     | mean y: 2489001.245
[2025-10-08 06:30:57] 2025-10-08 04:30:00,829 | INFO     | -- intersect: 14694887426.100378
[2025-10-08 06:30:57] 2025-10-08 04:30:00,829 | INFO     | intersect: 14694887426.100378
[2025-10-08 06:30:57] 2025-10-08 04:30:00,830 | INFO     | chi2: 0.8663795471199982
[2025-10-08 06:30:57] 2025-10-08 04:30:00,830 | INFO     | current chi2=0.8663795471199982 (change=2.6749898695064696 %)
[2025-10-08 06:30:57] 2025-10-08 04:30:00,830 | INFO     | left removable region: 30
[2025-10-08 06:30:57] 2025-10-08 04:30:00,830 | INFO     | sum of square deviations: 1778377530.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,831 | INFO     | sum of deviations: 3465595622.9999995
[2025-10-08 06:30:57] 2025-10-08 04:30:00,832 | INFO     | mean x: 1759891899.0
[2025-10-08 06:30:57] 2025-10-08 04:30:00,832 | INFO     | mean y: 2490555.1787709496
[2025-10-08 06:30:57] 2025-10-08 04:30:00,832 | INFO     | -- intersect: -3427081377.2373776
[2025-10-08 06:30:57] 2025-10-08 04:30:00,832 | INFO     | intersect: -3427081377.2373776
[2025-10-08 06:30:57] 2025-10-08 04:30:00,832 | INFO     | chi2: 0.0005307128435492266
[2025-10-08 06:30:57] 2025-10-08 04:30:00,832 | INFO     | -- intersect: -3427081377.2373776
[2025-10-08 06:30:57] 2025-10-08 04:30:00,833 | INFO     | current memory leak: 1.95 B/s (using 179 data points, chi2=0.00)
[2025-10-08 06:30:57] 2025-10-08 04:30:00,833 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | ..............................
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . Timing measurements:
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . get job = 0 s
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . initial setup = 3 s
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . payload setup = 132 s
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . stage-in = 0 s
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . payload execution = 13232 s
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . stage-out = 3 s
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | . log creation = 1 s
[2025-10-08 06:30:57] 2025-10-08 04:30:00,834 | INFO     | ..............................
[2025-10-08 06:30:57] 2025-10-08 04:30:01,165 | INFO     | time since job start (13657s) is within the limit (172800.0s)
[2025-10-08 06:30:57] 2025-10-08 04:30:01,208 | INFO     | 
[2025-10-08 06:30:57] 2025-10-08 04:30:01,208 | INFO     | job summary report
[2025-10-08 06:30:57] 2025-10-08 04:30:01,208 | INFO     | --------------------------------------------------
[2025-10-08 06:30:57] 2025-10-08 04:30:01,208 | INFO     | PanDA job id: 6831776804
[2025-10-08 06:30:57] 2025-10-08 04:30:01,208 | INFO     | task id: 46376905
[2025-10-08 06:30:57] 2025-10-08 04:30:01,208 | INFO     | errors: (none)
[2025-10-08 06:30:57] 2025-10-08 04:30:01,208 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | pilot state: finished 
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | transexitcode: 0
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | exeerrorcode: 0
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | exeerrordiag: 
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | exitcode: 0
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | exitmsg: OK
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | cpuconsumptiontime: 49199 s
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | nevents: 400
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | neventsw: 0
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | pid: 23754
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | pgrp: 23754
[2025-10-08 06:30:57] 2025-10-08 04:30:01,209 | INFO     | corecount: 8
[2025-10-08 06:30:57] 2025-10-08 04:30:01,210 | INFO     | event service: False
[2025-10-08 06:30:57] 2025-10-08 04:30:01,210 | INFO     | sizes: {0: 2348584, 1: 2348839, 12: 2348839, 23: 2348867, 34: 2348895, 44: 2348923, 55: 2349079, 66: 2349107, 77: 2349135, 87: 2349191, 95: 2349481, 98: 2349789, 1
[2025-10-08 06:30:57] 2025-10-08 04:30:01,210 | INFO     | --------------------------------------------------
[2025-10-08 06:30:57] 2025-10-08 04:30:01,210 | INFO     | 
[2025-10-08 06:30:57] 2025-10-08 04:30:01,210 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-08 06:30:57] 2025-10-08 04:30:01,765 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | job 6831776804 has completed (purged errors)
[2025-10-08 06:30:57] 2025-10-08 04:30:01,767 | INFO     | overall cleanup function is called
[2025-10-08 06:30:57] 2025-10-08 04:30:02,777 | INFO     | --- collectZombieJob: --- 10, [23754]
[2025-10-08 06:30:57] 2025-10-08 04:30:02,777 | INFO     | zombie collector waiting for pid 23754
[2025-10-08 06:30:57] 2025-10-08 04:30:02,777 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 06:30:57] 2025-10-08 04:30:02,777 | INFO     | collected zombie processes
[2025-10-08 06:30:57] 2025-10-08 04:30:02,777 | INFO     | will attempt to kill all subprocesses of pid=23754
[2025-10-08 06:30:57] 2025-10-08 04:30:02,909 | INFO     | process IDs to be killed: [23754] (in reverse order)
[2025-10-08 06:30:57] 2025-10-08 04:30:03,254 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 06:30:57] 2025-10-08 04:30:03,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 06:30:57] 2025-10-08 04:30:03,258 | INFO     | did not find any defunct processes belonging to 23754
[2025-10-08 06:30:57] 2025-10-08 04:30:03,261 | INFO     | did not find any defunct processes belonging to 23754
[2025-10-08 06:30:57] 2025-10-08 04:30:03,261 | INFO     | ready for new job
[2025-10-08 06:30:57] 2025-10-08 04:30:03,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 06:30:57] 2025-10-08 04:30:03,263 | INFO     | ***************************************
[2025-10-08 06:30:57] 2025-10-08 04:30:03,264 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 06:30:57] 2025-10-08 04:30:03,264 | INFO     | ***************************************
[2025-10-08 06:30:57] 2025-10-08 04:30:03,264 | INFO     | 
[2025-10-08 06:30:57] 2025-10-08 04:30:03,264 | INFO     | pilot is running in a VM
[2025-10-08 06:30:57] 2025-10-08 04:30:03,272 | INFO     | architecture information:
[2025-10-08 06:30:57] 2025-10-08 04:30:03,288 | INFO     | executing command: cat /etc/os-release
[2025-10-08 06:30:57] 2025-10-08 04:30:03,628 | INFO     | cat /etc/os-release:
[2025-10-08 06:30:57] NAME="CentOS Linux"
[2025-10-08 06:30:57] VERSION="7 (Core)"
[2025-10-08 06:30:57] ID="centos"
[2025-10-08 06:30:57] ID_LIKE="rhel fedora"
[2025-10-08 06:30:57] VERSION_ID="7"
[2025-10-08 06:30:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 06:30:57] ANSI_COLOR="0;31"
[2025-10-08 06:30:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 06:30:57] HOME_URL="https://www.centos.org/"
[2025-10-08 06:30:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 06:30:57] 
[2025-10-08 06:30:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 06:30:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 06:30:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 06:30:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 06:30:57] 
[2025-10-08 06:30:57] 2025-10-08 04:30:03,628 | INFO     | ***************************************
[2025-10-08 06:30:57] 2025-10-08 04:30:04,132 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-08 06:30:57] 2025-10-08 04:30:04,383 | INFO     | sufficient remaining disk space (495304310784 B)
[2025-10-08 06:30:57] 2025-10-08 04:30:04,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 06:30:57] 2025-10-08 04:30:04,384 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 06:30:57] 2025-10-08 04:30:04,384 | INFO     | update_server=False
[2025-10-08 06:30:57] 2025-10-08 04:30:04,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 06:30:57] 2025-10-08 04:30:04,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 06:30:57] 2025-10-08 04:30:04,481 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 06:30:57] 2025-10-08 04:30:04,481 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 06:30:57] 2025-10-08 04:30:04,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 06:30:57] 2025-10-08 04:30:04,481 | INFO     | will abort loop
[2025-10-08 06:30:57] 2025-10-08 04:30:05,390 | INFO     | [job] retrieve thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:05,390 | INFO     | all data control threads have been joined
[2025-10-08 06:30:57] 2025-10-08 04:30:05,455 | INFO     | [job] validate thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:05,487 | INFO     | [job] job monitor thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:05,537 | INFO     | all payload control threads have been joined
[2025-10-08 06:30:57] 2025-10-08 04:30:05,709 | INFO     | [data] copytool_in thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:05,964 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 06:30:57] 2025-10-08 04:30:05,990 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,040 | INFO     | all job control threads have been joined
[2025-10-08 06:30:57] 2025-10-08 04:30:06,198 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,393 | INFO     | [data] copytool_out thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,397 | INFO     | [data] control thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 06:30:57] 2025-10-08 04:30:06,543 | INFO     | [payload] control thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,579 | INFO     | [payload] validate_post thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,703 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,797 | INFO     | [payload] failed_post thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:06,970 | INFO     | [job] queue monitor thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:07,045 | INFO     | [job] control thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:10,516 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 06:30:57] 2025-10-08 04:30:33,214 | INFO     | 13662s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-08 06:30:57] 2025-10-08 04:30:34,346 | INFO     | PID=17218 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 06:30:57] 2025-10-08 04:30:34,346 | INFO     | .. there are 9 such processes running
[2025-10-08 06:30:57] 2025-10-08 04:30:34,346 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 06:30:57] 2025-10-08 04:30:34,346 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 06:30:57] 2025-10-08 04:30:34,346 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 06:30:57] 2025-10-08 04:30:46,872 | INFO     | [monitor] cgroup control has ended
[2025-10-08 06:30:57] 2025-10-08 04:30:47,989 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702180874048)>', '<ExcThread(monitor, started 139701512034048)>']
[2025-10-08 06:30:57] 2025-10-08 04:30:48,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 06:30:57] 2025-10-08 04:30:48,430 | INFO     | [monitor] control thread has ended
[2025-10-08 06:30:57] 2025-10-08 04:30:53,015 | INFO     | all workflow threads have been joined
[2025-10-08 06:30:57] 2025-10-08 04:30:53,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 06:30:57] 2025-10-08 04:30:53,015 | INFO     | traces error code: 0
[2025-10-08 06:30:57] 2025-10-08 04:30:53,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 06:30:57] 2025-10-08 04:30:53,397 [wrapper] ==== pilot stdout END ====
[2025-10-08 06:30:57] 2025-10-08 04:30:53,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 06:30:57] 2025-10-08 04:30:53,657 [wrapper] pilotpid: 17218
[2025-10-08 06:30:57] 2025-10-08 04:30:53,756 [wrapper] Pilot exit status: 0
[2025-10-08 06:30:57] 2025-10-08 04:30:54,222 [wrapper] pandaids: 6831776804
[2025-10-08 06:30:57] 2025-10-08 04:30:55,092 [wrapper] cleanup supervisor_pilot 30604 17219
[2025-10-08 06:30:57] 2025-10-08 04:30:55,138 [wrapper] Test setup, not cleaning
[2025-10-08 06:30:57] 2025-10-08 04:30:55,209 [wrapper] apfmon messages muted
[2025-10-08 06:30:57] 2025-10-08 04:30:55,277 [wrapper] ==== wrapper stdout END ====
[2025-10-08 06:30:57] 2025-10-08 04:30:55,362 [wrapper] ==== wrapper stderr END ====
[2025-10-08 06:30:57]  *** Error codes and diagnostics ***
[2025-10-08 06:30:57]     "exeErrorCode": 0,
[2025-10-08 06:30:57]     "exeErrorDiag": "",
[2025-10-08 06:30:57]     "pilotErrorCode": 0,
[2025-10-08 06:30:57]     "pilotErrorDiag": "",
[2025-10-08 06:30:57]  *** Listing of results directory ***
[2025-10-08 06:30:57] total 391548
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc    552446 Oct  5 18:06 pilot3.tar.gz
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc      5112 Oct  5 18:51 queuedata.json
[2025-10-08 06:30:57] -rwx------. 1 boinc boinc     36292 Oct  5 18:51 runpilot2-wrapper.sh
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc       100 Oct  8 02:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 06:30:57] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 02:38 run_atlas
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc       105 Oct  8 02:38 job.xml
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc      6391 Oct  8 02:38 init_data.xml
[2025-10-08 06:30:57] -rw-r--r--. 2 boinc boinc 213575298 Oct  8 02:38 EVNT.46376901._003333.pool.root.1
[2025-10-08 06:30:57] -rw-r--r--. 2 boinc boinc     15120 Oct  8 02:38 start_atlas.sh
[2025-10-08 06:30:57] drwxrwx--x. 2 boinc boinc        68 Oct  8 02:38 shared
[2025-10-08 06:30:57] -rw-r--r--. 2 boinc boinc    565603 Oct  8 02:38 input.tar.gz
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc         0 Oct  8 02:38 boinc_lockfile
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc      2516 Oct  8 02:38 pandaJob.out
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc    979833 Oct  8 02:42 agis_schedconf.cvmfs.json
[2025-10-08 06:30:57] drwx------. 4 boinc boinc      4096 Oct  8 02:42 pilot3
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc 178989373 Oct  8 06:27 HITS.46376905._090508.pool.root.1
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc       531 Oct  8 06:27 boinc_task_state.xml
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc      1015 Oct  8 06:28 memory_monitor_summary.json
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc   1560401 Oct  8 06:28 agis_ddmendpoints.agis.ALL.json
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc    429762 Oct  8 06:28 log.46376905._090508.job.log.tgz.1
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc        95 Oct  8 06:29 pilot_heartbeat.json
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc      7779 Oct  8 06:30 heartbeat.json
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc        28 Oct  8 06:30 wrapper_checkpoint.txt
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc      8192 Oct  8 06:30 boinc_mmap_file
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc      5187 Oct  8 06:30 pilotlog.txt
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc   1820480 Oct  8 06:30 log.46376905._090508.job.log.1
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc       357 Oct  8 06:30 output.list
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc       620 Oct  8 06:30 runtime_log
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc   2273280 Oct  8 06:30 result.tar.gz
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc      8717 Oct  8 06:30 runtime_log.err
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc       656 Oct  8 06:30 5oeKDmU8gP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFFQNDmvx4Q9n.diag
[2025-10-08 06:30:57] -rw-r--r--. 1 boinc boinc     20713 Oct  8 06:30 stderr.txt
[2025-10-08 06:30:57] HITS file was successfully produced:
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc 178989373 Oct  8 06:27 shared/HITS.pool.root.1
[2025-10-08 06:30:57]  *** Contents of shared directory: ***
[2025-10-08 06:30:57] total 386160
[2025-10-08 06:30:57] -rw-r--r--. 2 boinc boinc 213575298 Oct  8 02:38 ATLAS.root_0
[2025-10-08 06:30:57] -rw-r--r--. 2 boinc boinc     15120 Oct  8 02:38 start_atlas.sh
[2025-10-08 06:30:57] -rw-r--r--. 2 boinc boinc    565603 Oct  8 02:38 input.tar.gz
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc 178989373 Oct  8 06:27 HITS.pool.root.1
[2025-10-08 06:30:57] -rw-------. 1 boinc boinc   2273280 Oct  8 06:30 result.tar.gz
06:30:59 (13440): run_atlas exited; CPU time 49387.719928
06:30:59 (13440): called boinc_finish(0)

</stderr_txt>
]]>

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