Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:57:55 (1884555): wrapper (7.7.26015): starting
13:57:55 (1884555): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 13:57:55] Arguments: --nthreads 12
[2025-10-07 13:57:55] Threads: 12
[2025-10-07 13:57:55] Checking for CVMFS
[2025-10-07 13:57:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 13:57:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 13:57:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 13:57:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 13:57:55] 2.13.2.0 193085 6726 54808 151444 1 188 16428126 16777217 916 130560 0 25491086 99.998 222466 1209 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-07 13:57:55] CVMFS is ok
[2025-10-07 13:57:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 13:57:55] Checking for apptainer binary...
[2025-10-07 13:57:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 13:57:55] Running /usr/bin/apptainer --version
[2025-10-07 13:57:55] apptainer version 1.3.0-bp160.1.36
[2025-10-07 13:57:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 13:57:56] boinc-runner
[2025-10-07 13:57:56] apptainer works
[2025-10-07 13:57:56] Set ATHENA_PROC_NUMBER=12
[2025-10-07 13:57:56] Set ATHENA_CORE_NUMBER=12
[2025-10-07 13:57:56] Starting ATLAS job with PandaID=6834572115
[2025-10-07 13:57:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 14:24:12]  *** The last 200 lines of the pilot log: ***
[2025-10-07 14:24:12] 2025-10-07 19:23:07,017 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6834572115/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 14:24:12] 2025-10-07 19:23:07,018 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6834572115/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 14:24:12] 2025-10-07 19:23:07,018 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4238090 B
[2025-10-07 14:24:12] 2025-10-07 19:23:07,018 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15311 B
[2025-10-07 14:24:12] 2025-10-07 19:23:07,018 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-07 14:24:12] 2025-10-07 19:23:07,027 | INFO     | sufficient remaining disk space (3849482928128 B)
[2025-10-07 14:24:12] 2025-10-07 19:23:07,028 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-07 14:24:12] 2025-10-07 19:23:07,028 | INFO     | size of work directory /var/lib/boinc/slots/0/PanDA_Pilot-6834572115: 4515075 B (within 2537553920 B limit)
[2025-10-07 14:24:12] 2025-10-07 19:23:07,028 | INFO     | pfn file=/var/lib/boinc/slots/0/PanDA_Pilot-6834572115/HITS.46376905._134574.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-07 14:24:12] 2025-10-07 19:23:07,028 | INFO     | total size of present files: 0 B (workdir size: 4515075 B)
[2025-10-07 14:24:12] 2025-10-07 19:23:07,028 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/0/PanDA_Pilot-6834572115/HITS.46376905._134574.pool.root.1 since it does not exist
[2025-10-07 14:24:12] 2025-10-07 19:23:07,091 | INFO     | number of running child processes to parent process 1895319: 1
[2025-10-07 14:24:12] 2025-10-07 19:23:07,091 | INFO     | maximum number of monitored processes: 6
[2025-10-07 14:24:12] 2025-10-07 19:23:08,060 | INFO     | time since job start (1505s) is within the limit (172800.0s)
[2025-10-07 14:24:12] 2025-10-07 19:23:09,152 | INFO     | PID=1888446 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 14:24:12] 2025-10-07 19:23:09,152 | INFO     | .. there are 2 such processes running
[2025-10-07 14:24:12] 2025-10-07 19:23:09,390 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 14:24:12] 2025-10-07 19:23:09,594 | INFO     | monitor loop #118: job 0:6834572115 is in state 'finished'
[2025-10-07 14:24:12] 2025-10-07 19:23:09,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:24:12] 2025-10-07 19:23:10,152 | INFO     | time since job start (1507s) is within the limit (172800.0s)
[2025-10-07 14:24:12] 2025-10-07 19:23:11,692 | INFO     | job 6834572115 has state=finished
[2025-10-07 14:24:12] 2025-10-07 19:23:11,693 | INFO     | preparing for final server update for job 6834572115 in state='finished'
[2025-10-07 14:24:12] 2025-10-07 19:23:11,693 | INFO     | this job has now completed (state=finished)
[2025-10-07 14:24:12] 2025-10-07 19:23:11,693 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 14:24:12] 2025-10-07 19:23:11,693 | INFO     | log transfer has been attempted: DONE
[2025-10-07 14:24:12] 2025-10-07 19:23:11,693 | INFO     | job 6834572115 has finished - writing final server update
[2025-10-07 14:24:12] 2025-10-07 19:23:11,693 | INFO     | total number of processed events: 400 (read)
[2025-10-07 14:24:12] 2025-10-07 19:23:11,694 | INFO     | executing command: lscpu
[2025-10-07 14:24:12] 2025-10-07 19:23:11,719 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 14:24:12] 2025-10-07 19:23:12,096 | INFO     | monitor loop #119: job 0:6834572115 is in state 'finished'
[2025-10-07 14:24:12] 2025-10-07 19:23:12,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:24:12] 2025-10-07 19:23:12,158 | INFO     | time since job start (1509s) is within the limit (172800.0s)
[2025-10-07 14:24:12] 2025-10-07 19:23:14,164 | INFO     | time since job start (1511s) is within the limit (172800.0s)
[2025-10-07 14:24:12] 2025-10-07 19:23:14,599 | INFO     | monitor loop #120: job 0:6834572115 is in state 'finished'
[2025-10-07 14:24:12] 2025-10-07 19:23:14,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,168 | INFO     | time since job start (1513s) is within the limit (172800.0s)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,811 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 14:24:12] 2025-10-07 19:23:16,814 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4308.386625
[2025-10-07 14:24:12] 2025-10-07 19:23:16,817 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6834572115/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,817 | INFO     | extracted standard info from prmon json
[2025-10-07 14:24:12] 2025-10-07 19:23:16,817 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 14:24:12] 2025-10-07 19:23:16,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | fitting pss+swap vs Time
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | sum of square deviations: 1802824.5
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | sum of deviations: -616891597.0
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | mean x: 1759864324.5
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | mean y: 2867348.4444444445
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | -- intersect: 602194325055.0217
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | intersect: 602194325055.0217
[2025-10-07 14:24:12] 2025-10-07 19:23:16,818 | INFO     | chi2: 0.009234622310387389
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | -- intersect: 602194325055.0217
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | current memory leak: -342.18 B/s (using 18 data points, chi2=0.01)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | could have reported an average CPU frequency of 3984 MHz (4 samples)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | ..............................
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . Timing measurements:
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . get job = 0 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . initial setup = 3 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . payload setup = 2 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . stage-in = 0 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . payload execution = 1483 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . stage-out = 0 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | . log creation = 0 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,819 | INFO     | ..............................
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | 
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | job summary report
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | --------------------------------------------------
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | PanDA job id: 6834572115
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | task id: 46376905
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | errors: (none)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | pilot state: finished 
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | transexitcode: 0
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | exeerrorcode: 0
[2025-10-07 14:24:12] 2025-10-07 19:23:16,865 | INFO     | exeerrordiag: 
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | exitcode: 0
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | exitmsg: OK
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | cpuconsumptiontime: 15975 s
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | nevents: 400
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | neventsw: 0
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | pid: 1895319
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | pgrp: 1895319
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | corecount: 12
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | event service: False
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | sizes: {0: 2348599, 1: 2348798, 2: 2349060, 11: 2349088, 1489: 2373900, 1490: 2382898, 1493: 2383110, 1501: 2383304}
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | --------------------------------------------------
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | 
[2025-10-07 14:24:12] 2025-10-07 19:23:16,866 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-07 14:24:12] 2025-10-07 19:23:16,884 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,884 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,884 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | job 6834572115 has completed (purged errors)
[2025-10-07 14:24:12] 2025-10-07 19:23:16,885 | INFO     | overall cleanup function is called
[2025-10-07 14:24:12] 2025-10-07 19:23:17,893 | INFO     | --- collectZombieJob: --- 10, [1895319]
[2025-10-07 14:24:12] 2025-10-07 19:23:17,893 | INFO     | zombie collector waiting for pid 1895319
[2025-10-07 14:24:12] 2025-10-07 19:23:17,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 14:24:12] 2025-10-07 19:23:17,896 | INFO     | collected zombie processes
[2025-10-07 14:24:12] 2025-10-07 19:23:17,896 | INFO     | will attempt to kill all subprocesses of pid=1895319
[2025-10-07 14:24:12] 2025-10-07 19:23:17,967 | INFO     | process IDs to be killed: [1895319] (in reverse order)
[2025-10-07 14:24:12] 2025-10-07 19:23:18,003 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 14:24:12] 2025-10-07 19:23:18,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 14:24:12] 2025-10-07 19:23:18,007 | INFO     | did not find any defunct processes belonging to 1895319
[2025-10-07 14:24:12] 2025-10-07 19:23:18,010 | INFO     | did not find any defunct processes belonging to 1895319
[2025-10-07 14:24:12] 2025-10-07 19:23:18,010 | INFO     | ready for new job
[2025-10-07 14:24:12] 2025-10-07 19:23:18,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 14:24:12] 2025-10-07 19:23:18,012 | INFO     | ***************************************
[2025-10-07 14:24:12] 2025-10-07 19:23:18,012 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 14:24:12] 2025-10-07 19:23:18,012 | INFO     | ***************************************
[2025-10-07 14:24:12] 2025-10-07 19:23:18,012 | INFO     | 
[2025-10-07 14:24:12] 2025-10-07 19:23:18,013 | INFO     | architecture information:
[2025-10-07 14:24:12] 2025-10-07 19:23:18,013 | INFO     | executing command: cat /etc/os-release
[2025-10-07 14:24:12] 2025-10-07 19:23:18,025 | INFO     | cat /etc/os-release:
[2025-10-07 14:24:12] NAME="CentOS Linux"
[2025-10-07 14:24:12] VERSION="7 (Core)"
[2025-10-07 14:24:12] ID="centos"
[2025-10-07 14:24:12] ID_LIKE="rhel fedora"
[2025-10-07 14:24:12] VERSION_ID="7"
[2025-10-07 14:24:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 14:24:12] ANSI_COLOR="0;31"
[2025-10-07 14:24:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 14:24:12] HOME_URL="https://www.centos.org/"
[2025-10-07 14:24:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 14:24:12] 
[2025-10-07 14:24:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 14:24:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 14:24:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 14:24:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 14:24:12] 
[2025-10-07 14:24:12] 2025-10-07 19:23:18,025 | INFO     | ***************************************
[2025-10-07 14:24:12] 2025-10-07 19:23:18,528 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-07 14:24:12] 2025-10-07 19:23:18,541 | INFO     | sufficient remaining disk space (3849482928128 B)
[2025-10-07 14:24:12] 2025-10-07 19:23:18,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 14:24:12] 2025-10-07 19:23:18,541 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 14:24:12] 2025-10-07 19:23:18,541 | INFO     | update_server=False
[2025-10-07 14:24:12] 2025-10-07 19:23:18,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 14:24:12] 2025-10-07 19:23:18,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 14:24:12] 2025-10-07 19:23:18,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 14:24:12] 2025-10-07 19:23:18,542 | INFO     | aborting loop
[2025-10-07 14:24:12] 2025-10-07 19:23:18,789 | INFO     | all payload control threads have been joined
[2025-10-07 14:24:12] 2025-10-07 19:23:18,973 | INFO     | all data control threads have been joined
[2025-10-07 14:24:12] 2025-10-07 19:23:19,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 14:24:12] 2025-10-07 19:23:19,546 | INFO     | [job] queue monitor thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:19,547 | INFO     | [job] retrieve thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:19,547 | INFO     | [job] job monitor thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:19,794 | INFO     | [payload] control thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:19,841 | INFO     | all job control threads have been joined
[2025-10-07 14:24:12] 2025-10-07 19:23:19,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 14:24:12] 2025-10-07 19:23:19,975 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:19,978 | INFO     | [data] control thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,337 | INFO     | [job] validate thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,409 | INFO     | [payload] failed_post thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,446 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,560 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,580 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,846 | INFO     | [job] control thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,885 | INFO     | [data] copytool_in thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:20,972 | INFO     | [payload] validate_post thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:21,338 | INFO     | [data] copytool_out thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:23,938 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 14:24:12] 2025-10-07 19:23:49,314 | INFO     | PID=1888446 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 14:24:12] 2025-10-07 19:23:49,314 | INFO     | .. there are 2 such processes running
[2025-10-07 14:24:12] 2025-10-07 19:23:49,314 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 14:24:12] 2025-10-07 19:23:49,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 14:24:12] 2025-10-07 19:23:49,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 14:24:12] 2025-10-07 19:24:05,405 | INFO     | [monitor] cgroup control has ended
[2025-10-07 14:24:12] 2025-10-07 19:24:06,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681706018624)>', '<ExcThread(monitor, started 139681354196736)>']
[2025-10-07 14:24:12] 2025-10-07 19:24:07,404 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 14:24:12] 2025-10-07 19:24:07,404 | INFO     | [monitor] control thread has ended
[2025-10-07 14:24:12] 2025-10-07 19:24:11,957 | INFO     | all workflow threads have been joined
[2025-10-07 14:24:12] 2025-10-07 19:24:11,957 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 14:24:12] 2025-10-07 19:24:11,958 | INFO     | traces error code: 0
[2025-10-07 14:24:12] 2025-10-07 19:24:11,958 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 14:24:12] 2025-10-07 19:24:12,025 [wrapper] ==== pilot stdout END ====
[2025-10-07 14:24:12] 2025-10-07 19:24:12,028 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 14:24:12] 2025-10-07 19:24:12,031 [wrapper] pilotpid: 1888446
[2025-10-07 14:24:12] 2025-10-07 19:24:12,032 [wrapper] Pilot exit status: 0
[2025-10-07 14:24:12] 2025-10-07 19:24:12,037 [wrapper] pandaids: 6834572115
[2025-10-07 14:24:12] 2025-10-07 19:24:12,059 [wrapper] cleanup supervisor_pilot 1932382 1888447
[2025-10-07 14:24:12] 2025-10-07 19:24:12,060 [wrapper] Test setup, not cleaning
[2025-10-07 14:24:12] 2025-10-07 19:24:12,062 [wrapper] apfmon messages muted
[2025-10-07 14:24:12] 2025-10-07 19:24:12,064 [wrapper] ==== wrapper stdout END ====
[2025-10-07 14:24:12] 2025-10-07 19:24:12,065 [wrapper] ==== wrapper stderr END ====
[2025-10-07 14:24:12]  *** Error codes and diagnostics ***
[2025-10-07 14:24:12]     "exeErrorCode": 0,
[2025-10-07 14:24:12]     "exeErrorDiag": "",
[2025-10-07 14:24:12]     "pilotErrorCode": 0,
[2025-10-07 14:24:12]     "pilotErrorDiag": "",
[2025-10-07 14:24:12]  *** Listing of results directory ***
[2025-10-07 14:24:12] total 389348
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc    552446 Oct  7 06:55 pilot3.tar.gz
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc      5112 Oct  7 07:36 queuedata.json
[2025-10-07 14:24:12] -rwx------. 1 boinc boinc     36292 Oct  7 07:37 runpilot2-wrapper.sh
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc       100 Oct  7 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 14:24:12] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 13:57 run_atlas
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc       105 Oct  7 13:57 job.xml
[2025-10-07 14:24:12] -rw-r--r--. 2 boinc boinc 215513274 Oct  7 13:57 EVNT.46376901._004322.pool.root.1
[2025-10-07 14:24:12] -rw-r--r--. 2 boinc boinc     15120 Oct  7 13:57 start_atlas.sh
[2025-10-07 14:24:12] drwxrwx--x. 1 boinc boinc        76 Oct  7 13:57 shared
[2025-10-07 14:24:12] -rw-r--r--. 2 boinc boinc    565611 Oct  7 13:57 input.tar.gz
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc     10054 Oct  7 13:57 init_data.xml
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc         0 Oct  7 13:57 boinc_setup_complete
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc         0 Oct  7 13:57 boinc_lockfile
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc      2521 Oct  7 13:57 pandaJob.out
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc    977512 Oct  7 13:57 agis_schedconf.cvmfs.json
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc   1560401 Oct  7 13:58 agis_ddmendpoints.agis.ALL.json
[2025-10-07 14:24:12] drwx------. 1 boinc boinc       368 Oct  7 13:58 pilot3
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc 178092630 Oct  7 14:22 HITS.46376905._134574.pool.root.1
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc       529 Oct  7 14:22 boinc_task_state.xml
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc      1027 Oct  7 14:23 memory_monitor_summary.json
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc    340568 Oct  7 14:23 log.46376905._134574.job.log.tgz.1
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc        95 Oct  7 14:23 pilot_heartbeat.json
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc      7797 Oct  7 14:23 heartbeat.json
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc        27 Oct  7 14:24 wrapper_checkpoint.txt
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc      8192 Oct  7 14:24 boinc_mmap_file
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc      4825 Oct  7 14:24 pilotlog.txt
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc    262494 Oct  7 14:24 log.46376905._134574.job.log.1
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc       357 Oct  7 14:24 output.list
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc       620 Oct  7 14:24 runtime_log
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc    624640 Oct  7 14:24 result.tar.gz
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc      8727 Oct  7 14:24 runtime_log.err
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc       652 Oct  7 14:24 9HPLDmk7LQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJ6WNDm4MELFo.diag
[2025-10-07 14:24:12] -rw-r--r--. 1 boinc boinc     22209 Oct  7 14:24 stderr.txt
[2025-10-07 14:24:12] HITS file was successfully produced:
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc 178092630 Oct  7 14:22 shared/HITS.pool.root.1
[2025-10-07 14:24:12]  *** Contents of shared directory: ***
[2025-10-07 14:24:12] total 385568
[2025-10-07 14:24:12] -rw-r--r--. 2 boinc boinc 215513274 Oct  7 13:57 ATLAS.root_0
[2025-10-07 14:24:12] -rw-r--r--. 2 boinc boinc     15120 Oct  7 13:57 start_atlas.sh
[2025-10-07 14:24:12] -rw-r--r--. 2 boinc boinc    565611 Oct  7 13:57 input.tar.gz
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc 178092630 Oct  7 14:22 HITS.pool.root.1
[2025-10-07 14:24:12] -rw-------. 1 boinc boinc    624640 Oct  7 14:24 result.tar.gz
14:24:13 (1884555): run_atlas exited; CPU time 15975.174128
14:24:13 (1884555): called boinc_finish(0)

</stderr_txt>
]]>

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