Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:51:40 (1142791): wrapper (7.7.26015): starting
12:51:40 (1142791): wrapper: running run_atlas (--nthreads 10)
[2025-10-07 12:51:40] Arguments: --nthreads 10
[2025-10-07 12:51:40] Threads: 10
[2025-10-07 12:51:40] Checking for CVMFS
[2025-10-07 12:51:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 12:51:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 12:51:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 12:51:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 12:51:41] 2.13.2.0 116703 131174 184632 151441 0 502 25565709 32935937 18869 16776704 0 71308343 99.647 67147943 30913 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-07 12:51:41] CVMFS is ok
[2025-10-07 12:51:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 12:51:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 12:51:41] Further information can be found at the LHC@home message board.
[2025-10-07 12:51:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 12:51:41] Checking for apptainer binary...
[2025-10-07 12:51:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 12:51:41] Running /usr/bin/apptainer --version
[2025-10-07 12:51:41] apptainer version 1.4.2-1.el9
[2025-10-07 12:51:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 12:51:42] c-5-3.aglt2.org
[2025-10-07 12:51:42] apptainer works
[2025-10-07 12:51:42] Set ATHENA_PROC_NUMBER=10
[2025-10-07 12:51:42] Set ATHENA_CORE_NUMBER=10
[2025-10-07 12:51:42] Starting ATLAS job with PandaID=6833170761
[2025-10-07 12:51:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:20:06 (1142791): BOINC client no longer exists - exiting
15:20:06 (1142791): timer handler: client dead, exiting
15:27:59 (1543344): wrapper (7.7.26015): starting
15:27:59 (1543344): wrapper: running run_atlas (--nthreads 9)
[2025-10-07 15:27:59] Arguments: --nthreads 9
[2025-10-07 15:27:59] Threads: 9
[2025-10-07 15:27:59] This job has been restarted, cleaning up previous attempt
[2025-10-07 15:27:59] Checking for CVMFS
[2025-10-07 15:28:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 15:28:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 15:28:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 15:28:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 15:28:00] 2.13.2.0 116703 131330 173180 151445 3 55 27319202 32935937 11179 16776704 0 71602255 99.646 67936385 30985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-07 15:28:00] CVMFS is ok
[2025-10-07 15:28:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 15:28:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 15:28:00] Further information can be found at the LHC@home message board.
[2025-10-07 15:28:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 15:28:00] Checking for apptainer binary...
[2025-10-07 15:28:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 15:28:00] Running /usr/bin/apptainer --version
[2025-10-07 15:28:00] apptainer version 1.4.2-1.el9
[2025-10-07 15:28:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 15:28:00] c-5-3.aglt2.org
[2025-10-07 15:28:00] apptainer works
[2025-10-07 15:28:00] Set ATHENA_PROC_NUMBER=9
[2025-10-07 15:28:00] Set ATHENA_CORE_NUMBER=9
[2025-10-07 15:28:00] Starting ATLAS job with PandaID=6833170761
[2025-10-07 15:28:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 18:54:40]  *** The last 200 lines of the pilot log: ***
[2025-10-07 18:54:40] 2025-10-07 22:54:06,505 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 18:54:40] 2025-10-07 22:54:06,509 | INFO     | fitting pss+swap vs Time
[2025-10-07 18:54:40] 2025-10-07 22:54:06,510 | INFO     | sum of square deviations: 2555596332.2425885
[2025-10-07 18:54:40] 2025-10-07 22:54:06,511 | INFO     | sum of deviations: -4310475321.6683235
[2025-10-07 18:54:40] 2025-10-07 22:54:06,511 | INFO     | mean x: 1759871447.8465347
[2025-10-07 18:54:40] 2025-10-07 22:54:06,511 | INFO     | mean y: 2210622.6881188117
[2025-10-07 18:54:40] 2025-10-07 22:54:06,512 | INFO     | -- intersect: 2970552042.475031
[2025-10-07 18:54:40] 2025-10-07 22:54:06,512 | INFO     | intersect: 2970552042.475031
[2025-10-07 18:54:40] 2025-10-07 22:54:06,512 | INFO     | chi2: 1.8472689183322315
[2025-10-07 18:54:40] 2025-10-07 22:54:06,512 | INFO     | sum of square deviations: 2370488629.1268945
[2025-10-07 18:54:40] 2025-10-07 22:54:06,514 | INFO     | sum of deviations: -2939129085.8071127
[2025-10-07 18:54:40] 2025-10-07 22:54:06,514 | INFO     | mean x: 1759871295.35533
[2025-10-07 18:54:40] 2025-10-07 22:54:06,514 | INFO     | mean y: 2211734.340101523
[2025-10-07 18:54:40] 2025-10-07 22:54:06,514 | INFO     | -- intersect: 2184246631.2385683
[2025-10-07 18:54:40] 2025-10-07 22:54:06,514 | INFO     | intersect: 2184246631.2385683
[2025-10-07 18:54:40] 2025-10-07 22:54:06,515 | INFO     | chi2: 1.8454944571808418
[2025-10-07 18:54:40] 2025-10-07 22:54:06,515 | INFO     | current chi2=1.8454944571808418 (change=0.09605862653672098 %)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,515 | INFO     | right removable region: 196
[2025-10-07 18:54:40] 2025-10-07 22:54:06,515 | INFO     | sum of square deviations: 2370445929.1268945
[2025-10-07 18:54:40] 2025-10-07 22:54:06,516 | INFO     | sum of deviations: -35862452616.03045
[2025-10-07 18:54:40] 2025-10-07 22:54:06,517 | INFO     | mean x: 1759871600.35533
[2025-10-07 18:54:40] 2025-10-07 22:54:06,517 | INFO     | mean y: 2236407.3147208123
[2025-10-07 18:54:40] 2025-10-07 22:54:06,517 | INFO     | -- intersect: 26627316145.491745
[2025-10-07 18:54:40] 2025-10-07 22:54:06,517 | INFO     | intersect: 26627316145.491745
[2025-10-07 18:54:40] 2025-10-07 22:54:06,517 | INFO     | chi2: 0.22851858981880313
[2025-10-07 18:54:40] 2025-10-07 22:54:06,517 | INFO     | current chi2=0.22851858981880313 (change=87.62938153990505 %)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,518 | INFO     | sum of square deviations: 2194458488.479172
[2025-10-07 18:54:40] 2025-10-07 22:54:06,519 | INFO     | sum of deviations: -37841806825.80209
[2025-10-07 18:54:40] 2025-10-07 22:54:06,519 | INFO     | mean x: 1759871752.8645833
[2025-10-07 18:54:40] 2025-10-07 22:54:06,519 | INFO     | mean y: 2238066.6614583335
[2025-10-07 18:54:40] 2025-10-07 22:54:06,519 | INFO     | -- intersect: 30349919401.130844
[2025-10-07 18:54:40] 2025-10-07 22:54:06,519 | INFO     | intersect: 30349919401.130844
[2025-10-07 18:54:40] 2025-10-07 22:54:06,520 | INFO     | chi2: 0.1707308883701846
[2025-10-07 18:54:40] 2025-10-07 22:54:06,520 | INFO     | current chi2=0.1707308883701846 (change=25.28796519112057 %)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,520 | INFO     | sum of square deviations: 2027436824.9946525
[2025-10-07 18:54:40] 2025-10-07 22:54:06,521 | INFO     | sum of deviations: -34654701517.97859
[2025-10-07 18:54:40] 2025-10-07 22:54:06,522 | INFO     | mean x: 1759871905.3582888
[2025-10-07 18:54:40] 2025-10-07 22:54:06,522 | INFO     | mean y: 2235145.5668449197
[2025-10-07 18:54:40] 2025-10-07 22:54:06,522 | INFO     | -- intersect: 30083485933.851517
[2025-10-07 18:54:40] 2025-10-07 22:54:06,522 | INFO     | intersect: 30083485933.851517
[2025-10-07 18:54:40] 2025-10-07 22:54:06,522 | INFO     | chi2: 0.16907984282599592
[2025-10-07 18:54:40] 2025-10-07 22:54:06,522 | INFO     | current chi2=0.16907984282599592 (change=0.9670456002131437 %)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,523 | INFO     | left removable region: 30
[2025-10-07 18:54:40] 2025-10-07 22:54:06,523 | INFO     | sum of square deviations: 1418191905.0843422
[2025-10-07 18:54:40] 2025-10-07 22:54:06,524 | INFO     | sum of deviations: -19421789141.385544
[2025-10-07 18:54:40] 2025-10-07 22:54:06,524 | INFO     | mean x: 1759872179.8674698
[2025-10-07 18:54:40] 2025-10-07 22:54:06,524 | INFO     | mean y: 2223002.891566265
[2025-10-07 18:54:40] 2025-10-07 22:54:06,524 | INFO     | -- intersect: 24103239424.321358
[2025-10-07 18:54:40] 2025-10-07 22:54:06,524 | INFO     | intersect: 24103239424.321358
[2025-10-07 18:54:40] 2025-10-07 22:54:06,525 | INFO     | chi2: 0.1410215017784862
[2025-10-07 18:54:40] 2025-10-07 22:54:06,525 | INFO     | -- intersect: 24103239424.321358
[2025-10-07 18:54:40] 2025-10-07 22:54:06,525 | INFO     | current memory leak: -13.69 B/s (using 166 data points, chi2=0.14)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | could have reported an average CPU frequency of 2629 MHz (10 samples)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | ..............................
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | . Timing measurements:
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | . get job = 0 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | . initial setup = 1 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | . payload setup = 5 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | . stage-in = 0 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,526 | INFO     | . payload execution = 12316 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,527 | INFO     | . stage-out = 2 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,527 | INFO     | . log creation = 0 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,527 | INFO     | ..............................
[2025-10-07 18:54:40] 2025-10-07 22:54:06,751 | INFO     | time since job start (12356s) is within the limit (172800.0s)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,947 | INFO     | 
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | job summary report
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | --------------------------------------------------
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | PanDA job id: 6833170761
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | task id: 46376905
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | errors: (none)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | pilot state: finished 
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | transexitcode: 0
[2025-10-07 18:54:40] 2025-10-07 22:54:06,948 | INFO     | exeerrorcode: 0
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | exeerrordiag: 
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | exitcode: 0
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | exitmsg: OK
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | cpuconsumptiontime: 41923 s
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | nevents: 400
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | neventsw: 0
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | pid: 1565962
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | pgrp: 1565962
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | corecount: 9
[2025-10-07 18:54:40] 2025-10-07 22:54:06,949 | INFO     | event service: False
[2025-10-07 18:54:40] 2025-10-07 22:54:06,950 | INFO     | sizes: {0: 2348648, 1: 2348847, 5: 2349109, 12: 2349165, 12326: 2378926, 12327: 2378925, 12330: 2388107, 12331: 2388163, 12341: 2388357}
[2025-10-07 18:54:40] 2025-10-07 22:54:06,950 | INFO     | --------------------------------------------------
[2025-10-07 18:54:40] 2025-10-07 22:54:06,950 | INFO     | 
[2025-10-07 18:54:40] 2025-10-07 22:54:06,950 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-07 18:54:40] 2025-10-07 22:54:06,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,978 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,979 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,979 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 18:54:40] 2025-10-07 22:54:06,979 | INFO     | job 6833170761 has completed (purged errors)
[2025-10-07 18:54:40] 2025-10-07 22:54:06,979 | INFO     | overall cleanup function is called
[2025-10-07 18:54:40] 2025-10-07 22:54:07,988 | INFO     | --- collectZombieJob: --- 10, [1565962]
[2025-10-07 18:54:40] 2025-10-07 22:54:07,988 | INFO     | zombie collector waiting for pid 1565962
[2025-10-07 18:54:40] 2025-10-07 22:54:07,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 18:54:40] 2025-10-07 22:54:07,988 | INFO     | collected zombie processes
[2025-10-07 18:54:40] 2025-10-07 22:54:07,989 | INFO     | will attempt to kill all subprocesses of pid=1565962
[2025-10-07 18:54:40] 2025-10-07 22:54:08,288 | INFO     | process IDs to be killed: [1565962] (in reverse order)
[2025-10-07 18:54:40] 2025-10-07 22:54:08,382 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 18:54:40] 2025-10-07 22:54:08,383 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 18:54:40] 2025-10-07 22:54:08,394 | INFO     | did not find any defunct processes belonging to 1565962
[2025-10-07 18:54:40] 2025-10-07 22:54:08,406 | INFO     | did not find any defunct processes belonging to 1565962
[2025-10-07 18:54:40] 2025-10-07 22:54:08,406 | INFO     | ready for new job
[2025-10-07 18:54:40] 2025-10-07 22:54:08,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 18:54:40] 2025-10-07 22:54:08,408 | INFO     | ***************************************
[2025-10-07 18:54:40] 2025-10-07 22:54:08,408 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 18:54:40] 2025-10-07 22:54:08,409 | INFO     | ***************************************
[2025-10-07 18:54:40] 2025-10-07 22:54:08,409 | INFO     | 
[2025-10-07 18:54:40] 2025-10-07 22:54:08,423 | INFO     | architecture information:
[2025-10-07 18:54:40] 2025-10-07 22:54:08,424 | INFO     | executing command: cat /etc/os-release
[2025-10-07 18:54:40] 2025-10-07 22:54:08,440 | INFO     | cat /etc/os-release:
[2025-10-07 18:54:40] NAME="CentOS Linux"
[2025-10-07 18:54:40] VERSION="7 (Core)"
[2025-10-07 18:54:40] ID="centos"
[2025-10-07 18:54:40] ID_LIKE="rhel fedora"
[2025-10-07 18:54:40] VERSION_ID="7"
[2025-10-07 18:54:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 18:54:40] ANSI_COLOR="0;31"
[2025-10-07 18:54:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 18:54:40] HOME_URL="https://www.centos.org/"
[2025-10-07 18:54:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 18:54:40] 
[2025-10-07 18:54:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 18:54:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 18:54:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 18:54:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 18:54:40] 
[2025-10-07 18:54:40] 2025-10-07 22:54:08,440 | INFO     | ***************************************
[2025-10-07 18:54:40] 2025-10-07 22:54:08,945 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-07 18:54:40] 2025-10-07 22:54:08,984 | INFO     | sufficient remaining disk space (75745984512 B)
[2025-10-07 18:54:40] 2025-10-07 22:54:08,985 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 18:54:40] 2025-10-07 22:54:08,985 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 18:54:40] 2025-10-07 22:54:08,985 | INFO     | update_server=False
[2025-10-07 18:54:40] 2025-10-07 22:54:08,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 18:54:40] 2025-10-07 22:54:08,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 18:54:40] 2025-10-07 22:54:08,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:54:40] 2025-10-07 22:54:08,986 | INFO     | aborting loop
[2025-10-07 18:54:40] 2025-10-07 22:54:09,617 | INFO     | all payload control threads have been joined
[2025-10-07 18:54:40] 2025-10-07 22:54:09,894 | INFO     | all data control threads have been joined
[2025-10-07 18:54:40] 2025-10-07 22:54:09,991 | INFO     | [job] retrieve thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:09,997 | INFO     | [job] job monitor thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,039 | INFO     | [data] copytool_in thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,485 | INFO     | [payload] failed_post thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,561 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,623 | INFO     | [payload] control thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,624 | INFO     | all job control threads have been joined
[2025-10-07 18:54:40] 2025-10-07 22:54:10,709 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,765 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,836 | INFO     | [payload] validate_post thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,900 | INFO     | [data] control thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:10,992 | INFO     | [data] copytool_out thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:11,138 | INFO     | [job] validate thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:11,139 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 18:54:40] 2025-10-07 22:54:11,630 | INFO     | [job] control thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:11,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:54:40] 2025-10-07 22:54:12,721 | INFO     | [job] queue monitor thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:15,150 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 18:54:40] 2025-10-07 22:54:32,555 | INFO     | [monitor] cgroup control has ended
[2025-10-07 18:54:40] 2025-10-07 22:54:33,562 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153110882112)>', '<ExcThread(monitor, started 140152466814720)>']
[2025-10-07 18:54:40] 2025-10-07 22:54:38,587 | INFO     | all workflow threads have been joined
[2025-10-07 18:54:40] 2025-10-07 22:54:38,588 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 18:54:40] 2025-10-07 22:54:38,588 | INFO     | traces error code: 0
[2025-10-07 18:54:40] 2025-10-07 22:54:38,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 18:54:40] 2025-10-07 22:54:40,250 | INFO     | PID=1552271 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 18:54:40] 2025-10-07 22:54:40,250 | INFO     | .. there are 21 such processes running
[2025-10-07 18:54:40] 2025-10-07 22:54:40,251 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 18:54:40] 2025-10-07 22:54:40,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 18:54:40] 2025-10-07 22:54:40,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 18:54:40] 2025-10-07 22:54:40,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 18:54:40] 2025-10-07 22:54:40,252 | CRITICAL | thread 'MainThread' is not alive
[2025-10-07 18:54:40] 2025-10-07 22:54:40,252 | INFO     | [monitor] control thread has ended
[2025-10-07 18:54:40] 2025-10-07 22:54:40,399 [wrapper] ==== pilot stdout END ====
[2025-10-07 18:54:40] 2025-10-07 22:54:40,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 18:54:40] 2025-10-07 22:54:40,406 [wrapper] pilotpid: 1552271
[2025-10-07 18:54:40] 2025-10-07 22:54:40,409 [wrapper] Pilot exit status: 0
[2025-10-07 18:54:40] 2025-10-07 22:54:40,421 [wrapper] pandaids: 6833170761 6833170761
[2025-10-07 18:54:40] 2025-10-07 22:54:40,479 [wrapper] cleanup supervisor_pilot 1975221 1552272
[2025-10-07 18:54:40] 2025-10-07 22:54:40,482 [wrapper] Test setup, not cleaning
[2025-10-07 18:54:40] 2025-10-07 22:54:40,487 [wrapper] apfmon messages muted
[2025-10-07 18:54:40] 2025-10-07 22:54:40,490 [wrapper] ==== wrapper stdout END ====
[2025-10-07 18:54:40] 2025-10-07 22:54:40,493 [wrapper] ==== wrapper stderr END ====
[2025-10-07 18:54:40]  *** Error codes and diagnostics ***
[2025-10-07 18:54:40]     "exeErrorCode": 0,
[2025-10-07 18:54:40]     "exeErrorDiag": "",
[2025-10-07 18:54:40]     "pilotErrorCode": 0,
[2025-10-07 18:54:40]     "pilotErrorDiag": "",
[2025-10-07 18:54:40]  *** Listing of results directory ***
[2025-10-07 18:54:40] total 595076
[2025-10-07 18:54:40] drwx------. 4 boincer umatlas      4096 Jul 31 09:00 pilot3
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas    552446 Oct  7 01:44 pilot3.tar.gz
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas      5112 Oct  7 02:20 queuedata.json
[2025-10-07 18:54:40] -rwx------. 1 boincer umatlas     36292 Oct  7 02:21 runpilot2-wrapper.sh
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas       100 Oct  7 12:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 18:54:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 12:51 run_atlas
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas       105 Oct  7 12:51 job.xml
[2025-10-07 18:54:40] -rw-r--r--. 3 boincer umatlas 212183256 Oct  7 12:51 EVNT.46376901._004820.pool.root.1
[2025-10-07 18:54:40] -rw-r--r--. 3 boincer umatlas 212183256 Oct  7 12:51 ATLAS.root_0
[2025-10-07 18:54:40] -rw-r--r--. 2 boincer umatlas    565611 Oct  7 12:51 input.tar.gz
[2025-10-07 18:54:40] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 12:51 start_atlas.sh
[2025-10-07 18:54:40] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 12:51 shared
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas         0 Oct  7 12:51 boinc_lockfile
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas      2520 Oct  7 15:28 pandaJob.out
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas    979864 Oct  7 15:28 agis_schedconf.cvmfs.json
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas      6707 Oct  7 18:48 init_data.xml
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas 176970497 Oct  7 18:53 HITS.46376905._129441.pool.root.1
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas       531 Oct  7 18:53 boinc_task_state.xml
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas      1042 Oct  7 18:53 memory_monitor_summary.json
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas   1560401 Oct  7 18:53 agis_ddmendpoints.agis.ALL.json
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas    440541 Oct  7 18:53 log.46376905._129441.job.log.tgz.1
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas      7825 Oct  7 18:54 heartbeat.json
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas        28 Oct  7 18:54 wrapper_checkpoint.txt
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 18:54 boinc_mmap_file
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas        96 Oct  7 18:54 pilot_heartbeat.json
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas       893 Oct  7 18:54 pilotlog.txt
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas   1625224 Oct  7 18:54 log.46376905._129441.job.log.1
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas       357 Oct  7 18:54 output.list
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas       620 Oct  7 18:54 runtime_log
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas   2088960 Oct  7 18:54 result.tar.gz
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas      8774 Oct  7 18:54 runtime_log.err
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas       778 Oct  7 18:54 JQ2NDmoFGQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmz9KMDmipK6im.diag
[2025-10-07 18:54:40] -rw-r--r--. 1 boincer umatlas     23307 Oct  7 18:54 stderr.txt
[2025-10-07 18:54:40] HITS file was successfully produced:
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas 176970497 Oct  7 18:53 shared/HITS.pool.root.1
[2025-10-07 18:54:40]  *** Contents of shared directory: ***
[2025-10-07 18:54:40] total 382652
[2025-10-07 18:54:40] -rw-r--r--. 3 boincer umatlas 212183256 Oct  7 12:51 ATLAS.root_0
[2025-10-07 18:54:40] -rw-r--r--. 2 boincer umatlas    565611 Oct  7 12:51 input.tar.gz
[2025-10-07 18:54:40] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 12:51 start_atlas.sh
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas 176970497 Oct  7 18:53 HITS.pool.root.1
[2025-10-07 18:54:40] -rw-------. 1 boincer umatlas   2088960 Oct  7 18:54 result.tar.gz
18:54:41 (1543344): run_atlas exited; CPU time 42238.139764
18:54:41 (1543344): called boinc_finish(0)

</stderr_txt>
]]>

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