Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:57:22 (326305): wrapper (7.7.26015): starting
12:57:22 (326305): wrapper: running run_atlas (--nthreads 11)
[2025-10-07 12:57:22] Arguments: --nthreads 11
[2025-10-07 12:57:22] Threads: 11
[2025-10-07 12:57:22] Checking for CVMFS
[2025-10-07 12:57:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 12:57:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 12:57:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 12:57:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 12:57:22] 2.13.2.0 3269412 28796 274596 151441 0 444 40758236 40960000 25829 16776704 0 347387864 99.821 161764059 36603 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-07 12:57:22] CVMFS is ok
[2025-10-07 12:57:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 12:57:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 12:57:22] Further information can be found at the LHC@home message board.
[2025-10-07 12:57:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 12:57:22] Checking for apptainer binary...
[2025-10-07 12:57:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 12:57:22] Running /usr/bin/apptainer --version
[2025-10-07 12:57:22] apptainer version 1.4.2-1.el9
[2025-10-07 12:57:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 12:57:22] c8-16-2.aglt2.org
[2025-10-07 12:57:22] apptainer works
[2025-10-07 12:57:22] Set ATHENA_PROC_NUMBER=11
[2025-10-07 12:57:22] Set ATHENA_CORE_NUMBER=11
[2025-10-07 12:57:22] Starting ATLAS job with PandaID=6833171504
[2025-10-07 12:57:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 13:36:43]  *** The last 200 lines of the pilot log: ***
[2025-10-07 13:36:43] 2025-10-07 17:35:45,706 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 13:36:43] 2025-10-07 17:35:45,707 | INFO     | log transfer has been attempted: DONE
[2025-10-07 13:36:43] 2025-10-07 17:35:45,707 | INFO     | job 6833171504 has finished - writing final server update
[2025-10-07 13:36:43] 2025-10-07 17:35:45,707 | INFO     | total number of processed events: 400 (read)
[2025-10-07 13:36:43] 2025-10-07 17:35:45,711 | INFO     | executing command: lscpu
[2025-10-07 13:36:43] 2025-10-07 17:35:45,864 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 13:36:43] 2025-10-07 17:35:46,413 | INFO     | time since job start (2293s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:35:48,419 | INFO     | time since job start (2295s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:35:50,430 | INFO     | time since job start (2297s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:35:50,803 | WARNING  | process 353607 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 13:36:43] 2025-10-07 17:35:50,803 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6833171504/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 13:36:43] 2025-10-07 17:35:52,449 | INFO     | time since job start (2299s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:35:52,745 | INFO     | number of running child processes to parent process 353607: 1
[2025-10-07 13:36:43] 2025-10-07 17:35:52,745 | INFO     | maximum number of monitored processes: 6
[2025-10-07 13:36:43] 2025-10-07 17:35:54,455 | INFO     | time since job start (2301s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:35:55,250 | INFO     | monitor loop #153: job 0:6833171504 is in state 'finished'
[2025-10-07 13:36:43] 2025-10-07 17:35:55,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:36:43] 2025-10-07 17:35:56,463 | INFO     | time since job start (2303s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:35:57,755 | INFO     | monitor loop #154: job 0:6833171504 is in state 'finished'
[2025-10-07 13:36:43] 2025-10-07 17:35:57,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:36:43] 2025-10-07 17:35:58,471 | INFO     | time since job start (2305s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:36:00,263 | INFO     | monitor loop #155: job 0:6833171504 is in state 'finished'
[2025-10-07 13:36:43] 2025-10-07 17:36:00,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:36:43] 2025-10-07 17:36:00,478 | INFO     | time since job start (2307s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:36:02,487 | INFO     | time since job start (2309s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:36:02,771 | INFO     | monitor loop #156: job 0:6833171504 is in state 'finished'
[2025-10-07 13:36:43] 2025-10-07 17:36:02,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:36:43] 2025-10-07 17:36:04,494 | INFO     | time since job start (2311s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:36:05,276 | INFO     | monitor loop #157: job 0:6833171504 is in state 'finished'
[2025-10-07 13:36:43] 2025-10-07 17:36:05,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:36:43] 2025-10-07 17:36:07,207 | INFO     | PID=333052 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 13:36:43] 2025-10-07 17:36:07,208 | INFO     | .. there are 38 such processes running
[2025-10-07 13:36:43] 2025-10-07 17:36:07,782 | INFO     | monitor loop #158: job 0:6833171504 is in state 'finished'
[2025-10-07 13:36:43] 2025-10-07 17:36:07,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:36:43] 2025-10-07 17:36:08,213 | INFO     | time since job start (2315s) is within the limit (172800.0s)
[2025-10-07 13:36:43] 2025-10-07 17:36:09,226 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 13:36:43] 2025-10-07 17:36:09,236 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9900859374934
[2025-10-07 13:36:43] 2025-10-07 17:36:09,346 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6833171504/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 13:36:43] 2025-10-07 17:36:09,346 | INFO     | extracted standard info from prmon json
[2025-10-07 13:36:43] 2025-10-07 17:36:09,346 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 13:36:43] 2025-10-07 17:36:09,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 13:36:43] 2025-10-07 17:36:09,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 13:36:43] 2025-10-07 17:36:09,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 13:36:43] 2025-10-07 17:36:09,359 | INFO     | fitting pss+swap vs Time
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | sum of square deviations: 9228080.0
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | sum of deviations: -100206591.0
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | mean x: 1759857500.0
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | mean y: 2314338.806451613
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | -- intersect: 19112391486.033447
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | intersect: 19112391486.033447
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | chi2: 0.0012197817399121835
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | -- intersect: 19112391486.033447
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | current memory leak: -10.86 B/s (using 31 data points, chi2=0.00)
[2025-10-07 13:36:43] 2025-10-07 17:36:09,360 | INFO     | could have reported an average CPU frequency of 3763 MHz (5 samples)
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | ..............................
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . Timing measurements:
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . get job = 0 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . initial setup = 2 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . payload setup = 5 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . stage-in = 0 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . payload execution = 2263 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . stage-out = 1 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | . log creation = 0 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,361 | INFO     | ..............................
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | 
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | job summary report
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | --------------------------------------------------
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | PanDA job id: 6833171504
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | task id: 46376905
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | errors: (none)
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | pilot state: finished 
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | transexitcode: 0
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | exeerrorcode: 0
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | exeerrordiag: 
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | exitcode: 0
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | exitmsg: OK
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | cpuconsumptiontime: 20235 s
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | nevents: 400
[2025-10-07 13:36:43] 2025-10-07 17:36:09,941 | INFO     | neventsw: 0
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | pid: 353607
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | pgrp: 353607
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | corecount: 11
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | event service: False
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | sizes: {0: 2348817, 5: 2349079, 11: 2349135, 2274: 2374310, 2277: 2383364, 2301: 2383534}
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | --------------------------------------------------
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | 
[2025-10-07 13:36:43] 2025-10-07 17:36:09,942 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,986 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | job 6833171504 has completed (purged errors)
[2025-10-07 13:36:43] 2025-10-07 17:36:09,987 | INFO     | overall cleanup function is called
[2025-10-07 13:36:43] 2025-10-07 17:36:10,995 | INFO     | --- collectZombieJob: --- 10, [353607]
[2025-10-07 13:36:43] 2025-10-07 17:36:10,995 | INFO     | zombie collector waiting for pid 353607
[2025-10-07 13:36:43] 2025-10-07 17:36:10,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 13:36:43] 2025-10-07 17:36:10,995 | INFO     | collected zombie processes
[2025-10-07 13:36:43] 2025-10-07 17:36:10,995 | INFO     | will attempt to kill all subprocesses of pid=353607
[2025-10-07 13:36:43] 2025-10-07 17:36:12,900 | INFO     | process IDs to be killed: [353607] (in reverse order)
[2025-10-07 13:36:43] 2025-10-07 17:36:13,529 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 13:36:43] 2025-10-07 17:36:13,529 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 13:36:43] 2025-10-07 17:36:13,608 | INFO     | did not find any defunct processes belonging to 353607
[2025-10-07 13:36:43] 2025-10-07 17:36:13,649 | INFO     | did not find any defunct processes belonging to 353607
[2025-10-07 13:36:43] 2025-10-07 17:36:13,650 | INFO     | ready for new job
[2025-10-07 13:36:43] 2025-10-07 17:36:13,650 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 13:36:43] 2025-10-07 17:36:13,651 | INFO     | ***************************************
[2025-10-07 13:36:43] 2025-10-07 17:36:13,651 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 13:36:43] 2025-10-07 17:36:13,651 | INFO     | ***************************************
[2025-10-07 13:36:43] 2025-10-07 17:36:13,651 | INFO     | 
[2025-10-07 13:36:43] 2025-10-07 17:36:13,675 | INFO     | architecture information:
[2025-10-07 13:36:43] 2025-10-07 17:36:13,679 | INFO     | executing command: cat /etc/os-release
[2025-10-07 13:36:43] 2025-10-07 17:36:13,717 | INFO     | cat /etc/os-release:
[2025-10-07 13:36:43] NAME="CentOS Linux"
[2025-10-07 13:36:43] VERSION="7 (Core)"
[2025-10-07 13:36:43] ID="centos"
[2025-10-07 13:36:43] ID_LIKE="rhel fedora"
[2025-10-07 13:36:43] VERSION_ID="7"
[2025-10-07 13:36:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 13:36:43] ANSI_COLOR="0;31"
[2025-10-07 13:36:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 13:36:43] HOME_URL="https://www.centos.org/"
[2025-10-07 13:36:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 13:36:43] 
[2025-10-07 13:36:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 13:36:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 13:36:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 13:36:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 13:36:43] 
[2025-10-07 13:36:43] 2025-10-07 17:36:13,717 | INFO     | ***************************************
[2025-10-07 13:36:43] 2025-10-07 17:36:14,221 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-07 13:36:43] 2025-10-07 17:36:14,260 | INFO     | sufficient remaining disk space (168002846720 B)
[2025-10-07 13:36:43] 2025-10-07 17:36:14,261 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 13:36:43] 2025-10-07 17:36:14,261 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 13:36:43] 2025-10-07 17:36:14,261 | INFO     | update_server=False
[2025-10-07 13:36:43] 2025-10-07 17:36:14,261 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 13:36:43] 2025-10-07 17:36:14,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 13:36:43] 2025-10-07 17:36:14,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:36:43] 2025-10-07 17:36:14,263 | INFO     | aborting loop
[2025-10-07 13:36:43] 2025-10-07 17:36:14,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 13:36:43] 2025-10-07 17:36:14,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:36:43] 2025-10-07 17:36:14,606 | INFO     | all data control threads have been joined
[2025-10-07 13:36:43] 2025-10-07 17:36:15,247 | INFO     | all payload control threads have been joined
[2025-10-07 13:36:43] 2025-10-07 17:36:15,267 | INFO     | [job] retrieve thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:15,274 | INFO     | [job] job monitor thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:15,428 | INFO     | all job control threads have been joined
[2025-10-07 13:36:43] 2025-10-07 17:36:15,533 | INFO     | [job] queue monitor thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:15,612 | INFO     | [data] control thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:15,748 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:15,951 | INFO     | [payload] validate_post thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:15,951 | INFO     | [payload] failed_post thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:16,253 | INFO     | [payload] control thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:16,269 | INFO     | [data] copytool_out thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:16,434 | INFO     | [job] control thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:16,478 | INFO     | [data] copytool_in thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:16,623 | INFO     | [job] validate thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:16,623 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:16,683 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:18,331 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:25,183 | INFO     | job.realtimelogging is not enabled
[2025-10-07 13:36:43] 2025-10-07 17:36:26,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 13:36:43] 2025-10-07 17:36:36,985 | INFO     | [monitor] cgroup control has ended
[2025-10-07 13:36:43] 2025-10-07 17:36:37,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140322264241984)>', '<ExcThread(monitor, started 140321539221248)>']
[2025-10-07 13:36:43] 2025-10-07 17:36:42,429 | INFO     | all workflow threads have been joined
[2025-10-07 13:36:43] 2025-10-07 17:36:42,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 13:36:43] 2025-10-07 17:36:42,429 | INFO     | traces error code: 0
[2025-10-07 13:36:43] 2025-10-07 17:36:42,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 13:36:43] 2025-10-07 17:36:42,625 | INFO     | PID=333052 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-07 13:36:43] 2025-10-07 17:36:42,626 | INFO     | .. there are 38 such processes running
[2025-10-07 13:36:43] 2025-10-07 17:36:42,627 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 13:36:43] 2025-10-07 17:36:42,627 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 13:36:43] 2025-10-07 17:36:42,627 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 13:36:43] 2025-10-07 17:36:42,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 13:36:43] 2025-10-07 17:36:42,627 | INFO     | [monitor] control thread has ended
[2025-10-07 13:36:43] 2025-10-07 17:36:43,012 [wrapper] ==== pilot stdout END ====
[2025-10-07 13:36:43] 2025-10-07 17:36:43,021 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 13:36:43] 2025-10-07 17:36:43,025 [wrapper] pilotpid: 333052
[2025-10-07 13:36:43] 2025-10-07 17:36:43,026 [wrapper] Pilot exit status: 0
[2025-10-07 13:36:43] 2025-10-07 17:36:43,040 [wrapper] pandaids: 6833171504
[2025-10-07 13:36:43] 2025-10-07 17:36:43,196 [wrapper] cleanup supervisor_pilot  765252 333053
[2025-10-07 13:36:43] 2025-10-07 17:36:43,214 [wrapper] Test setup, not cleaning
[2025-10-07 13:36:43] 2025-10-07 17:36:43,223 [wrapper] apfmon messages muted
[2025-10-07 13:36:43] 2025-10-07 17:36:43,225 [wrapper] ==== wrapper stdout END ====
[2025-10-07 13:36:43] 2025-10-07 17:36:43,227 [wrapper] ==== wrapper stderr END ====
[2025-10-07 13:36:43]  *** Error codes and diagnostics ***
[2025-10-07 13:36:43]     "exeErrorCode": 0,
[2025-10-07 13:36:43]     "exeErrorDiag": "",
[2025-10-07 13:36:43]     "pilotErrorCode": 0,
[2025-10-07 13:36:43]     "pilotErrorDiag": "",
[2025-10-07 13:36:43]  *** Listing of results directory ***
[2025-10-07 13:36:43] total 391512
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas    552446 Oct  7 02:32 pilot3.tar.gz
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas      5112 Oct  7 02:36 queuedata.json
[2025-10-07 13:36:43] -rwx------. 1 boincer umatlas     36292 Oct  7 02:36 runpilot2-wrapper.sh
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas       100 Oct  7 12:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 13:36:43] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  7 12:57 run_atlas
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas       105 Oct  7 12:57 job.xml
[2025-10-07 13:36:43] -rw-r--r--. 2 boincer umatlas 214275190 Oct  7 12:57 EVNT.46376901._004833.pool.root.1
[2025-10-07 13:36:43] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 12:57 start_atlas.sh
[2025-10-07 13:36:43] drwxrwx--x. 2 boincer umatlas      4096 Oct  7 12:57 shared
[2025-10-07 13:36:43] -rw-r--r--. 2 boincer umatlas    565600 Oct  7 12:57 input.tar.gz
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas         0 Oct  7 12:57 boinc_lockfile
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas      2519 Oct  7 12:57 pandaJob.out
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas    977512 Oct  7 12:57 agis_schedconf.cvmfs.json
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas   1560401 Oct  7 12:57 agis_ddmendpoints.agis.ALL.json
[2025-10-07 13:36:43] drwx------. 4 boincer umatlas      4096 Oct  7 12:57 pilot3
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas      7162 Oct  7 13:27 init_data.xml
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas 181415790 Oct  7 13:35 HITS.46376905._129764.pool.root.1
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas       529 Oct  7 13:35 boinc_task_state.xml
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas      1047 Oct  7 13:35 memory_monitor_summary.json
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas    322428 Oct  7 13:35 log.46376905._129764.job.log.tgz.1
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas      7772 Oct  7 13:36 heartbeat.json
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas        27 Oct  7 13:36 wrapper_checkpoint.txt
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas        95 Oct  7 13:36 pilot_heartbeat.json
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas       822 Oct  7 13:36 pilotlog.txt
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas    346827 Oct  7 13:36 log.46376905._129764.job.log.1
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas       357 Oct  7 13:36 output.list
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas       620 Oct  7 13:36 runtime_log
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas    686080 Oct  7 13:36 result.tar.gz
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas      8700 Oct  7 13:36 runtime_log.err
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas       651 Oct  7 13:36 gfTNDm3TGQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVLWNDm9TBcEn.diag
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas      8192 Oct  7 13:36 boinc_mmap_file
[2025-10-07 13:36:43] -rw-r--r--. 1 boincer umatlas     22256 Oct  7 13:36 stderr.txt
[2025-10-07 13:36:43] HITS file was successfully produced:
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas 181415790 Oct  7 13:35 shared/HITS.pool.root.1
[2025-10-07 13:36:43]  *** Contents of shared directory: ***
[2025-10-07 13:36:43] total 387668
[2025-10-07 13:36:43] -rw-r--r--. 2 boincer umatlas 214275190 Oct  7 12:57 ATLAS.root_0
[2025-10-07 13:36:43] -rw-r--r--. 2 boincer umatlas     15120 Oct  7 12:57 start_atlas.sh
[2025-10-07 13:36:43] -rw-r--r--. 2 boincer umatlas    565600 Oct  7 12:57 input.tar.gz
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas 181415790 Oct  7 13:35 HITS.pool.root.1
[2025-10-07 13:36:43] -rw-------. 1 boincer umatlas    686080 Oct  7 13:36 result.tar.gz
13:37:05 (326305): run_atlas exited; CPU time 20315.617701
13:37:05 (326305): called boinc_finish(0)

</stderr_txt>
]]>

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