Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:34:57 (24787): wrapper (7.7.26015): starting
12:34:57 (24787): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 12:34:57] Arguments: --nthreads 12
[2025-10-07 12:34:57] Threads: 12
[2025-10-07 12:34:57] Checking for CVMFS
[2025-10-07 12:34:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 12:34:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 12:34:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 12:34:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 12:34:57] 2.11.2.0 14820 71273 90908 151441 3 58 18239267 20275200 1 130560 0 43016903 99.991 2260368 45750 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-07 12:34:57] CVMFS is ok
[2025-10-07 12:34:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 12:34:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 12:34:57] Further information can be found at the LHC@home message board.
[2025-10-07 12:34:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 12:34:57] Checking for apptainer binary...
[2025-10-07 12:34:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 12:34:57] Running /usr/bin/apptainer --version
[2025-10-07 12:34:57] apptainer version 1.3.2-1.el7
[2025-10-07 12:34:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 12:34:59] c-205-27.aglt2.org
[2025-10-07 12:34:59] apptainer works
[2025-10-07 12:34:59] Set ATHENA_PROC_NUMBER=12
[2025-10-07 12:34:59] Set ATHENA_CORE_NUMBER=12
[2025-10-07 12:34:59] Starting ATLAS job with PandaID=6832200328
[2025-10-07 12:34:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 13:40:28]  *** The last 200 lines of the pilot log: ***
[2025-10-07 13:40:28] 2025-10-07 17:39:48,574 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 13:40:28] 2025-10-07 17:39:48,574 | INFO     | summary of transferred files:
[2025-10-07 13:40:28] 2025-10-07 17:39:48,574 | INFO     |  -- lfn=log.46376905._101603.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 13:40:28] 2025-10-07 17:39:48,575 | INFO     | stage-out finished correctly
[2025-10-07 13:40:28] 2025-10-07 17:39:48,849 | INFO     | time since job start (3874s) is within the limit (172800.0s)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,210 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 13:40:28] 2025-10-07 17:39:50,483 | WARNING  | process 4548 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 13:40:28] 2025-10-07 17:39:50,483 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832200328/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,484 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832200328/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,485 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4560805 B
[2025-10-07 13:40:28] 2025-10-07 17:39:50,485 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16030 B
[2025-10-07 13:40:28] 2025-10-07 17:39:50,485 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-07 13:40:28] 2025-10-07 17:39:50,503 | INFO     | sufficient remaining disk space (29384245248 B)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,504 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,505 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6832200328: 4855365 B (within 2537553920 B limit)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,505 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6832200328/HITS.46376905._101603.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,505 | INFO     | total size of present files: 0 B (workdir size: 4855365 B)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,505 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6832200328/HITS.46376905._101603.pool.root.1 since it does not exist
[2025-10-07 13:40:28] 2025-10-07 17:39:50,595 | INFO     | number of running child processes to parent process 4548: 1
[2025-10-07 13:40:28] 2025-10-07 17:39:50,595 | INFO     | maximum number of monitored processes: 6
[2025-10-07 13:40:28] 2025-10-07 17:39:50,854 | INFO     | time since job start (3876s) is within the limit (172800.0s)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,919 | INFO     | job 6832200328 has state=finished
[2025-10-07 13:40:28] 2025-10-07 17:39:50,920 | INFO     | preparing for final server update for job 6832200328 in state='finished'
[2025-10-07 13:40:28] 2025-10-07 17:39:50,920 | INFO     | this job has now completed (state=finished)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,920 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,921 | INFO     | log transfer has been attempted: DONE
[2025-10-07 13:40:28] 2025-10-07 17:39:50,921 | INFO     | job 6832200328 has finished - writing final server update
[2025-10-07 13:40:28] 2025-10-07 17:39:50,921 | INFO     | total number of processed events: 400 (read)
[2025-10-07 13:40:28] 2025-10-07 17:39:50,922 | INFO     | executing command: lscpu
[2025-10-07 13:40:28] 2025-10-07 17:39:50,949 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 13:40:28] 2025-10-07 17:39:52,860 | INFO     | time since job start (3878s) is within the limit (172800.0s)
[2025-10-07 13:40:28] 2025-10-07 17:39:53,098 | INFO     | monitor loop #288: job 0:6832200328 is in state 'finished'
[2025-10-07 13:40:28] 2025-10-07 17:39:53,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:40:28] 2025-10-07 17:39:53,980 | INFO     | PID=30380 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 13:40:28] 2025-10-07 17:39:54,980 | INFO     | time since job start (3880s) is within the limit (172800.0s)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,601 | INFO     | monitor loop #289: job 0:6832200328 is in state 'finished'
[2025-10-07 13:40:28] 2025-10-07 17:39:55,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,608 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-07 13:40:28] 2025-10-07 17:39:55,612 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-07 13:40:28] 2025-10-07 17:39:55,614 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832200328/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,615 | INFO     | extracted standard info from prmon json
[2025-10-07 13:40:28] 2025-10-07 17:39:55,615 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 13:40:28] 2025-10-07 17:39:55,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 13:40:28] 2025-10-07 17:39:55,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 13:40:28] 2025-10-07 17:39:55,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 13:40:28] 2025-10-07 17:39:55,618 | INFO     | fitting pss+swap vs Time
[2025-10-07 13:40:28] 2025-10-07 17:39:55,618 | INFO     | sum of square deviations: 54438230.0
[2025-10-07 13:40:28] 2025-10-07 17:39:55,619 | INFO     | sum of deviations: -6094611412.5
[2025-10-07 13:40:28] 2025-10-07 17:39:55,619 | INFO     | mean x: 1759856924.5
[2025-10-07 13:40:28] 2025-10-07 17:39:55,619 | INFO     | mean y: 2830561.9464285714
[2025-10-07 13:40:28] 2025-10-07 17:39:55,619 | INFO     | -- intersect: 197026945718.24103
[2025-10-07 13:40:28] 2025-10-07 17:39:55,619 | INFO     | intersect: 197026945718.24103
[2025-10-07 13:40:28] 2025-10-07 17:39:55,619 | INFO     | chi2: 0.04943470176939345
[2025-10-07 13:40:28] 2025-10-07 17:39:55,619 | INFO     | -- intersect: 197026945718.24103
[2025-10-07 13:40:28] 2025-10-07 17:39:55,620 | INFO     | current memory leak: -111.95 B/s (using 56 data points, chi2=0.05)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,620 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,620 | INFO     | ..............................
[2025-10-07 13:40:28] 2025-10-07 17:39:55,620 | INFO     | . Timing measurements:
[2025-10-07 13:40:28] 2025-10-07 17:39:55,620 | INFO     | . get job = 0 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,620 | INFO     | . initial setup = 2 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,621 | INFO     | . payload setup = 7 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,621 | INFO     | . stage-in = 0 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,621 | INFO     | . payload execution = 3845 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,621 | INFO     | . stage-out = 0 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,621 | INFO     | . log creation = 0 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,621 | INFO     | ..............................
[2025-10-07 13:40:28] 2025-10-07 17:39:55,704 | INFO     | 
[2025-10-07 13:40:28] 2025-10-07 17:39:55,704 | INFO     | job summary report
[2025-10-07 13:40:28] 2025-10-07 17:39:55,704 | INFO     | --------------------------------------------------
[2025-10-07 13:40:28] 2025-10-07 17:39:55,704 | INFO     | PanDA job id: 6832200328
[2025-10-07 13:40:28] 2025-10-07 17:39:55,705 | INFO     | task id: 46376905
[2025-10-07 13:40:28] 2025-10-07 17:39:55,705 | INFO     | errors: (none)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,705 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 13:40:28] 2025-10-07 17:39:55,705 | INFO     | pilot state: finished 
[2025-10-07 13:40:28] 2025-10-07 17:39:55,705 | INFO     | transexitcode: 0
[2025-10-07 13:40:28] 2025-10-07 17:39:55,705 | INFO     | exeerrorcode: 0
[2025-10-07 13:40:28] 2025-10-07 17:39:55,706 | INFO     | exeerrordiag: 
[2025-10-07 13:40:28] 2025-10-07 17:39:55,706 | INFO     | exitcode: 0
[2025-10-07 13:40:28] 2025-10-07 17:39:55,706 | INFO     | exitmsg: OK
[2025-10-07 13:40:28] 2025-10-07 17:39:55,706 | INFO     | cpuconsumptiontime: 41557 s
[2025-10-07 13:40:28] 2025-10-07 17:39:55,706 | INFO     | nevents: 400
[2025-10-07 13:40:28] 2025-10-07 17:39:55,706 | INFO     | neventsw: 0
[2025-10-07 13:40:28] 2025-10-07 17:39:55,706 | INFO     | pid: 4548
[2025-10-07 13:40:28] 2025-10-07 17:39:55,707 | INFO     | pgrp: 4548
[2025-10-07 13:40:28] 2025-10-07 17:39:55,707 | INFO     | corecount: 12
[2025-10-07 13:40:28] 2025-10-07 17:39:55,707 | INFO     | event service: False
[2025-10-07 13:40:28] 2025-10-07 17:39:55,707 | INFO     | sizes: {0: 2348645, 1: 2348844, 6: 2349106, 11: 2349134, 3856: 2374885, 3859: 2383883, 3860: 2384067, 3866: 2384289}
[2025-10-07 13:40:28] 2025-10-07 17:39:55,707 | INFO     | --------------------------------------------------
[2025-10-07 13:40:28] 2025-10-07 17:39:55,707 | INFO     | 
[2025-10-07 13:40:28] 2025-10-07 17:39:55,708 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-07 13:40:28] 2025-10-07 17:39:55,733 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,733 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,733 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,733 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,735 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,735 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,736 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,736 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,736 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 13:40:28] 2025-10-07 17:39:55,736 | INFO     | job 6832200328 has completed (purged errors)
[2025-10-07 13:40:28] 2025-10-07 17:39:55,737 | INFO     | overall cleanup function is called
[2025-10-07 13:40:28] 2025-10-07 17:39:56,745 | INFO     | --- collectZombieJob: --- 10, [4548]
[2025-10-07 13:40:28] 2025-10-07 17:39:56,745 | INFO     | zombie collector waiting for pid 4548
[2025-10-07 13:40:28] 2025-10-07 17:39:56,745 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 13:40:28] 2025-10-07 17:39:56,745 | INFO     | collected zombie processes
[2025-10-07 13:40:28] 2025-10-07 17:39:56,745 | INFO     | will attempt to kill all subprocesses of pid=4548
[2025-10-07 13:40:28] 2025-10-07 17:39:56,835 | INFO     | process IDs to be killed: [4548] (in reverse order)
[2025-10-07 13:40:28] 2025-10-07 17:39:56,889 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 13:40:28] 2025-10-07 17:39:56,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 13:40:28] 2025-10-07 17:39:56,893 | INFO     | did not find any defunct processes belonging to 4548
[2025-10-07 13:40:28] 2025-10-07 17:39:56,896 | INFO     | did not find any defunct processes belonging to 4548
[2025-10-07 13:40:28] 2025-10-07 17:39:56,896 | INFO     | ready for new job
[2025-10-07 13:40:28] 2025-10-07 17:39:56,897 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 13:40:28] 2025-10-07 17:39:56,898 | INFO     | ***************************************
[2025-10-07 13:40:28] 2025-10-07 17:39:56,898 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 13:40:28] 2025-10-07 17:39:56,898 | INFO     | ***************************************
[2025-10-07 13:40:28] 2025-10-07 17:39:56,898 | INFO     | 
[2025-10-07 13:40:28] 2025-10-07 17:39:56,899 | INFO     | architecture information:
[2025-10-07 13:40:28] 2025-10-07 17:39:56,899 | INFO     | executing command: cat /etc/os-release
[2025-10-07 13:40:28] 2025-10-07 17:39:56,915 | INFO     | cat /etc/os-release:
[2025-10-07 13:40:28] NAME="CentOS Linux"
[2025-10-07 13:40:28] VERSION="7 (Core)"
[2025-10-07 13:40:28] ID="centos"
[2025-10-07 13:40:28] ID_LIKE="rhel fedora"
[2025-10-07 13:40:28] VERSION_ID="7"
[2025-10-07 13:40:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 13:40:28] ANSI_COLOR="0;31"
[2025-10-07 13:40:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 13:40:28] HOME_URL="https://www.centos.org/"
[2025-10-07 13:40:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 13:40:28] 
[2025-10-07 13:40:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 13:40:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 13:40:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 13:40:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 13:40:28] 
[2025-10-07 13:40:28] 2025-10-07 17:39:56,916 | INFO     | ***************************************
[2025-10-07 13:40:28] 2025-10-07 17:39:57,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-07 13:40:28] 2025-10-07 17:39:57,435 | INFO     | sufficient remaining disk space (29389488128 B)
[2025-10-07 13:40:28] 2025-10-07 17:39:57,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 13:40:28] 2025-10-07 17:39:57,435 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 13:40:28] 2025-10-07 17:39:57,435 | INFO     | update_server=False
[2025-10-07 13:40:28] 2025-10-07 17:39:57,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 13:40:28] 2025-10-07 17:39:57,436 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:40:28] 2025-10-07 17:39:57,436 | INFO     | aborting loop
[2025-10-07 13:40:28] 2025-10-07 17:39:57,436 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 13:40:28] 2025-10-07 17:39:57,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:40:28] 2025-10-07 17:39:57,479 | INFO     | all job control threads have been joined
[2025-10-07 13:40:28] 2025-10-07 17:39:57,663 | INFO     | all data control threads have been joined
[2025-10-07 13:40:28] 2025-10-07 17:39:58,255 | INFO     | all payload control threads have been joined
[2025-10-07 13:40:28] 2025-10-07 17:39:58,439 | INFO     | [job] retrieve thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,442 | INFO     | [job] job monitor thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,442 | INFO     | [job] queue monitor thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,485 | INFO     | [job] control thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,603 | INFO     | [payload] validate_post thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,666 | INFO     | [job] validate thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,669 | INFO     | [data] control thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:58,741 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:59,020 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:59,032 | INFO     | [data] copytool_in thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:59,230 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:59,260 | INFO     | [payload] control thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:59,442 | INFO     | [data] copytool_out thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:39:59,611 | INFO     | [payload] failed_post thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:40:00,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 13:40:28] 2025-10-07 17:40:04,807 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 13:40:28] 2025-10-07 17:40:19,514 | INFO     | [monitor] cgroup control has ended
[2025-10-07 13:40:28] 2025-10-07 17:40:20,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123092313920)>', '<ExcThread(monitor, started 140122276218624)>']
[2025-10-07 13:40:28] 2025-10-07 17:40:25,093 | INFO     | all workflow threads have been joined
[2025-10-07 13:40:28] 2025-10-07 17:40:25,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 13:40:28] 2025-10-07 17:40:25,103 | INFO     | traces error code: 0
[2025-10-07 13:40:28] 2025-10-07 17:40:25,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 13:40:28] 2025-10-07 17:40:28,175 | INFO     | PID=30380 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 13:40:28] 2025-10-07 17:40:28,176 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 13:40:28] 2025-10-07 17:40:28,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 13:40:28] 2025-10-07 17:40:28,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 13:40:28] 2025-10-07 17:40:28,176 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 13:40:28] 2025-10-07 17:40:28,177 | INFO     | [monitor] control thread has ended
[2025-10-07 13:40:28] 2025-10-07 17:40:28,265 [wrapper] ==== pilot stdout END ====
[2025-10-07 13:40:28] 2025-10-07 17:40:28,270 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 13:40:28] 2025-10-07 17:40:28,273 [wrapper] pilotpid: 30380
[2025-10-07 13:40:28] 2025-10-07 17:40:28,277 [wrapper] Pilot exit status: 0
[2025-10-07 13:40:28] 2025-10-07 17:40:28,294 [wrapper] pandaids: 6832200328
[2025-10-07 13:40:28] 2025-10-07 17:40:28,333 [wrapper] cleanup supervisor_pilot  6537 30381
[2025-10-07 13:40:28] 2025-10-07 17:40:28,337 [wrapper] Test setup, not cleaning
[2025-10-07 13:40:28] 2025-10-07 17:40:28,341 [wrapper] apfmon messages muted
[2025-10-07 13:40:28] 2025-10-07 17:40:28,345 [wrapper] ==== wrapper stdout END ====
[2025-10-07 13:40:28] 2025-10-07 17:40:28,349 [wrapper] ==== wrapper stderr END ====
[2025-10-07 13:40:28]  *** Error codes and diagnostics ***
[2025-10-07 13:40:28]     "exeErrorCode": 0,
[2025-10-07 13:40:28]     "exeErrorDiag": "",
[2025-10-07 13:40:28]     "pilotErrorCode": 0,
[2025-10-07 13:40:28]     "pilotErrorDiag": "",
[2025-10-07 13:40:28]  *** Listing of results directory ***
[2025-10-07 13:40:28] total 394188
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 20:57 pilot3.tar.gz
[2025-10-07 13:40:28] -rwx------ 1 boincer umatlas     36292 Oct  5 21:03 runpilot2-wrapper.sh
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 21:03 queuedata.json
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas       100 Oct  7 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 13:40:28] -rwxr-xr-x 1 boincer umatlas      7986 Oct  7 12:34 run_atlas
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas       105 Oct  7 12:34 job.xml
[2025-10-07 13:40:28] -rw-r--r-- 2 boincer umatlas 215192022 Oct  7 12:34 EVNT.46376901._003756.pool.root.1
[2025-10-07 13:40:28] drwxrwx--x 2 boincer umatlas      4096 Oct  7 12:34 shared
[2025-10-07 13:40:28] -rw-r--r-- 2 boincer umatlas    565597 Oct  7 12:34 input.tar.gz
[2025-10-07 13:40:28] -rw-r--r-- 2 boincer umatlas     15120 Oct  7 12:34 start_atlas.sh
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas         0 Oct  7 12:34 boinc_lockfile
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas      2519 Oct  7 12:34 pandaJob.out
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas    977512 Oct  7 12:35 agis_schedconf.cvmfs.json
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas   1560401 Oct  7 12:35 agis_ddmendpoints.agis.ALL.json
[2025-10-07 13:40:28] drwx------ 4 boincer umatlas      4096 Oct  7 12:35 pilot3
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas      5953 Oct  7 13:36 init_data.xml
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas 182662877 Oct  7 13:39 HITS.46376905._101603.pool.root.1
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas       529 Oct  7 13:39 boinc_task_state.xml
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas      1050 Oct  7 13:39 memory_monitor_summary.json
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas    387090 Oct  7 13:39 log.46376905._101603.job.log.tgz.1
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas      7859 Oct  7 13:39 heartbeat.json
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas      8192 Oct  7 13:40 boinc_mmap_file
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas        27 Oct  7 13:40 wrapper_checkpoint.txt
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas       745 Oct  7 13:40 pilotlog.txt
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas        95 Oct  7 13:40 pilot_heartbeat.json
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas    568033 Oct  7 13:40 log.46376905._101603.job.log.1
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas       357 Oct  7 13:40 output.list
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas       620 Oct  7 13:40 runtime_log
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas    972800 Oct  7 13:40 result.tar.gz
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas      8705 Oct  7 13:40 runtime_log.err
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas       659 Oct  7 13:40 eEFNDmHooP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmp4HMDmNahIGo.diag
[2025-10-07 13:40:28] -rw-r--r-- 1 boincer umatlas     22536 Oct  7 13:40 stderr.txt
[2025-10-07 13:40:28] HITS file was successfully produced:
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas 182662877 Oct  7 13:39 shared/HITS.pool.root.1
[2025-10-07 13:40:28]  *** Contents of shared directory: ***
[2025-10-07 13:40:28] total 390064
[2025-10-07 13:40:28] -rw-r--r-- 2 boincer umatlas 215192022 Oct  7 12:34 ATLAS.root_0
[2025-10-07 13:40:28] -rw-r--r-- 2 boincer umatlas    565597 Oct  7 12:34 input.tar.gz
[2025-10-07 13:40:28] -rw-r--r-- 2 boincer umatlas     15120 Oct  7 12:34 start_atlas.sh
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas 182662877 Oct  7 13:39 HITS.pool.root.1
[2025-10-07 13:40:28] -rw------- 1 boincer umatlas    972800 Oct  7 13:40 result.tar.gz
13:40:29 (24787): run_atlas exited; CPU time 41529.659470
13:40:29 (24787): called boinc_finish(0)

</stderr_txt>
]]>

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