Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:31:35 (1825771): wrapper (7.7.26015): starting
13:31:35 (1825771): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 13:31:35] Arguments: --nthreads 12
[2025-10-07 13:31:35] Threads: 12
[2025-10-07 13:31:35] Checking for CVMFS
[2025-10-07 13:31:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 13:31:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 13:31:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 13:31:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 13:31:35] 2.13.2.0 193085 6700 54824 151444 3 57 16428126 16777217 916 130560 0 25382898 99.998 222462 1212 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-07 13:31:35] CVMFS is ok
[2025-10-07 13:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 13:31:35] Checking for apptainer binary...
[2025-10-07 13:31:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 13:31:35] Running /usr/bin/apptainer --version
[2025-10-07 13:31:35] apptainer version 1.3.0-bp160.1.36
[2025-10-07 13:31:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 13:31:35] boinc-runner
[2025-10-07 13:31:35] apptainer works
[2025-10-07 13:31:35] Set ATHENA_PROC_NUMBER=12
[2025-10-07 13:31:35] Set ATHENA_CORE_NUMBER=12
[2025-10-07 13:31:36] Starting ATLAS job with PandaID=6833639947
[2025-10-07 13:31:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 13:57:50]  *** The last 200 lines of the pilot log: ***
[2025-10-07 13:57:50]  status=None
[2025-10-07 13:57:50]  status_code=0
[2025-10-07 13:57:50]  storage_token=
[2025-10-07 13:57:50]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6833639947/log.46376905._133347.job.log.tgz.1
[2025-10-07 13:57:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/5e/log.46376905._133347.job.log.tgz.1
[2025-10-07 13:57:50]  workdir=None
[2025-10-07 13:57:50] ]
[2025-10-07 13:57:50] 2025-10-07 18:56:36,853 | INFO     | transferring file log.46376905._133347.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6833639947/log.46376905._133347.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-07 13:57:50] 2025-10-07 18:56:36,853 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6833639947/log.46376905._133347.job.log.tgz.1 /var/lib/boinc/slots/0/log.46376905._133347.job
[2025-10-07 13:57:50] 2025-10-07 18:56:36,863 | INFO     | adding to output.list: log.46376905._133347.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/5e/log.46376905._133347.job.log.tg
[2025-10-07 13:57:50] 2025-10-07 18:56:36,863 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 13:57:50] 2025-10-07 18:56:36,863 | INFO     | summary of transferred files:
[2025-10-07 13:57:50] 2025-10-07 18:56:36,863 | INFO     |  -- lfn=log.46376905._133347.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 13:57:50] 2025-10-07 18:56:36,863 | INFO     | stage-out finished correctly
[2025-10-07 13:57:50] 2025-10-07 18:56:37,786 | INFO     | time since job start (1494s) is within the limit (172800.0s)
[2025-10-07 13:57:50] 2025-10-07 18:56:38,540 | INFO     | monitor loop #118: job 0:6833639947 is in state 'finished'
[2025-10-07 13:57:50] 2025-10-07 18:56:38,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:57:50] 2025-10-07 18:56:39,792 | INFO     | time since job start (1496s) is within the limit (172800.0s)
[2025-10-07 13:57:50] 2025-10-07 18:56:40,343 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 13:57:50] 2025-10-07 18:56:40,389 | INFO     | job 6833639947 has state=finished
[2025-10-07 13:57:50] 2025-10-07 18:56:40,389 | INFO     | preparing for final server update for job 6833639947 in state='finished'
[2025-10-07 13:57:50] 2025-10-07 18:56:40,390 | INFO     | this job has now completed (state=finished)
[2025-10-07 13:57:50] 2025-10-07 18:56:40,390 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 13:57:50] 2025-10-07 18:56:40,390 | INFO     | log transfer has been attempted: DONE
[2025-10-07 13:57:50] 2025-10-07 18:56:40,390 | INFO     | job 6833639947 has finished - writing final server update
[2025-10-07 13:57:50] 2025-10-07 18:56:40,390 | INFO     | total number of processed events: 400 (read)
[2025-10-07 13:57:50] 2025-10-07 18:56:40,391 | INFO     | executing command: lscpu
[2025-10-07 13:57:50] 2025-10-07 18:56:40,406 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 13:57:50] 2025-10-07 18:56:41,043 | INFO     | monitor loop #119: job 0:6833639947 is in state 'finished'
[2025-10-07 13:57:50] 2025-10-07 18:56:41,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:57:50] 2025-10-07 18:56:41,797 | INFO     | time since job start (1498s) is within the limit (172800.0s)
[2025-10-07 13:57:50] 2025-10-07 18:56:43,546 | INFO     | monitor loop #120: job 0:6833639947 is in state 'finished'
[2025-10-07 13:57:50] 2025-10-07 18:56:43,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 13:57:50] 2025-10-07 18:56:43,802 | INFO     | time since job start (1500s) is within the limit (172800.0s)
[2025-10-07 13:57:50] 2025-10-07 18:56:44,197 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-07 13:57:50] 2025-10-07 18:56:44,200 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3850.1387812499997
[2025-10-07 13:57:50] 2025-10-07 18:56:44,204 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6833639947/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 13:57:50] 2025-10-07 18:56:44,204 | INFO     | extracted standard info from prmon json
[2025-10-07 13:57:50] 2025-10-07 18:56:44,204 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 13:57:50] 2025-10-07 18:56:44,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 13:57:50] 2025-10-07 18:56:44,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 13:57:50] 2025-10-07 18:56:44,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 13:57:50] 2025-10-07 18:56:44,205 | INFO     | fitting pss+swap vs Time
[2025-10-07 13:57:50] 2025-10-07 18:56:44,205 | INFO     | sum of square deviations: 1802824.5
[2025-10-07 13:57:50] 2025-10-07 18:56:44,205 | INFO     | sum of deviations: -175861017.50000003
[2025-10-07 13:57:50] 2025-10-07 18:56:44,205 | INFO     | mean x: 1759862744.5
[2025-10-07 13:57:50] 2025-10-07 18:56:44,205 | INFO     | mean y: 2874279.388888889
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | -- intersect: 171673080063.76367
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | intersect: 171673080063.76367
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | chi2: 0.00636624925633726
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | -- intersect: 171673080063.76367
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | current memory leak: -97.55 B/s (using 18 data points, chi2=0.01)
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | could have reported an average CPU frequency of 4032 MHz (4 samples)
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | ..............................
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | . Timing measurements:
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | . get job = 0 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | . initial setup = 3 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | . payload setup = 2 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | . stage-in = 0 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | . payload execution = 1474 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,206 | INFO     | . stage-out = 0 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,207 | INFO     | . log creation = 0 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,207 | INFO     | ..............................
[2025-10-07 13:57:50] 2025-10-07 18:56:44,299 | INFO     | 
[2025-10-07 13:57:50] 2025-10-07 18:56:44,299 | INFO     | job summary report
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | --------------------------------------------------
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | PanDA job id: 6833639947
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | task id: 46376905
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | errors: (none)
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | pilot state: finished 
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | transexitcode: 0
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | exeerrorcode: 0
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | exeerrordiag: 
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | exitcode: 0
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | exitmsg: OK
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | cpuconsumptiontime: 15768 s
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | nevents: 400
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | neventsw: 0
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | pid: 1836539
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | pgrp: 1836539
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | corecount: 12
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | event service: False
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | sizes: {0: 2348652, 1: 2348766, 2: 2349056, 11: 2349084, 1480: 2373870, 1481: 2382868, 1484: 2383052, 1488: 2383246}
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | --------------------------------------------------
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | 
[2025-10-07 13:57:50] 2025-10-07 18:56:44,300 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-07 13:57:50] 2025-10-07 18:56:44,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | job 6833639947 has completed (purged errors)
[2025-10-07 13:57:50] 2025-10-07 18:56:44,313 | INFO     | overall cleanup function is called
[2025-10-07 13:57:50] 2025-10-07 18:56:45,321 | INFO     | --- collectZombieJob: --- 10, [1836539]
[2025-10-07 13:57:50] 2025-10-07 18:56:45,321 | INFO     | zombie collector waiting for pid 1836539
[2025-10-07 13:57:50] 2025-10-07 18:56:45,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 13:57:50] 2025-10-07 18:56:45,322 | INFO     | collected zombie processes
[2025-10-07 13:57:50] 2025-10-07 18:56:45,322 | INFO     | will attempt to kill all subprocesses of pid=1836539
[2025-10-07 13:57:50] 2025-10-07 18:56:45,376 | INFO     | process IDs to be killed: [1836539] (in reverse order)
[2025-10-07 13:57:50] 2025-10-07 18:56:45,408 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 13:57:50] 2025-10-07 18:56:45,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 13:57:50] 2025-10-07 18:56:45,412 | INFO     | did not find any defunct processes belonging to 1836539
[2025-10-07 13:57:50] 2025-10-07 18:56:45,415 | INFO     | did not find any defunct processes belonging to 1836539
[2025-10-07 13:57:50] 2025-10-07 18:56:45,415 | INFO     | ready for new job
[2025-10-07 13:57:50] 2025-10-07 18:56:45,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 13:57:50] 2025-10-07 18:56:45,417 | INFO     | ***************************************
[2025-10-07 13:57:50] 2025-10-07 18:56:45,417 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 13:57:50] 2025-10-07 18:56:45,417 | INFO     | ***************************************
[2025-10-07 13:57:50] 2025-10-07 18:56:45,417 | INFO     | 
[2025-10-07 13:57:50] 2025-10-07 18:56:45,418 | INFO     | architecture information:
[2025-10-07 13:57:50] 2025-10-07 18:56:45,418 | INFO     | executing command: cat /etc/os-release
[2025-10-07 13:57:50] 2025-10-07 18:56:45,427 | INFO     | cat /etc/os-release:
[2025-10-07 13:57:50] NAME="CentOS Linux"
[2025-10-07 13:57:50] VERSION="7 (Core)"
[2025-10-07 13:57:50] ID="centos"
[2025-10-07 13:57:50] ID_LIKE="rhel fedora"
[2025-10-07 13:57:50] VERSION_ID="7"
[2025-10-07 13:57:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 13:57:50] ANSI_COLOR="0;31"
[2025-10-07 13:57:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 13:57:50] HOME_URL="https://www.centos.org/"
[2025-10-07 13:57:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 13:57:50] 
[2025-10-07 13:57:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 13:57:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 13:57:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 13:57:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 13:57:50] 
[2025-10-07 13:57:50] 2025-10-07 18:56:45,427 | INFO     | ***************************************
[2025-10-07 13:57:50] 2025-10-07 18:56:45,929 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-07 13:57:50] 2025-10-07 18:56:45,939 | INFO     | sufficient remaining disk space (3853851295744 B)
[2025-10-07 13:57:50] 2025-10-07 18:56:45,939 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 13:57:50] 2025-10-07 18:56:45,939 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 13:57:50] 2025-10-07 18:56:45,939 | INFO     | update_server=False
[2025-10-07 13:57:50] 2025-10-07 18:56:45,939 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 13:57:50] 2025-10-07 18:56:45,939 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:57:50] 2025-10-07 18:56:46,049 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-07 13:57:50] 2025-10-07 18:56:46,050 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-07 13:57:50] 2025-10-07 18:56:46,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:57:50] 2025-10-07 18:56:46,050 | INFO     | will abort loop
[2025-10-07 13:57:50] 2025-10-07 18:56:46,127 | INFO     | all job control threads have been joined
[2025-10-07 13:57:50] 2025-10-07 18:56:46,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 13:57:50] 2025-10-07 18:56:46,652 | INFO     | all data control threads have been joined
[2025-10-07 13:57:50] 2025-10-07 18:56:46,667 | INFO     | all payload control threads have been joined
[2025-10-07 13:57:50] 2025-10-07 18:56:46,944 | INFO     | [job] queue monitor thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:46,945 | INFO     | [job] retrieve thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,034 | INFO     | [payload] validate_post thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,050 | INFO     | [job] job monitor thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,132 | INFO     | [job] control thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,259 | INFO     | [data] copytool_in thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,403 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 13:57:50] 2025-10-07 18:56:47,513 | INFO     | [payload] failed_post thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,658 | INFO     | [data] control thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,672 | INFO     | [payload] control thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:47,897 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:48,233 | INFO     | [job] validate thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:48,234 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:48,334 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:48,425 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:49,407 | INFO     | [data] copytool_out thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:56:50,400 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 13:57:50] 2025-10-07 18:57:16,956 | INFO     | PID=1829669 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 13:57:50] 2025-10-07 18:57:16,957 | INFO     | .. there are 2 such processes running
[2025-10-07 13:57:50] 2025-10-07 18:57:16,957 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 13:57:50] 2025-10-07 18:57:16,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 13:57:50] 2025-10-07 18:57:16,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 13:57:50] 2025-10-07 18:57:45,289 | INFO     | [monitor] cgroup control has ended
[2025-10-07 13:57:50] 2025-10-07 18:57:45,402 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139828682716992)>', '<ExcThread(monitor, started 139828314216192)>']
[2025-10-07 13:57:50] 2025-10-07 18:57:46,101 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 13:57:50] 2025-10-07 18:57:46,101 | INFO     | [monitor] control thread has ended
[2025-10-07 13:57:50] 2025-10-07 18:57:50,426 | INFO     | all workflow threads have been joined
[2025-10-07 13:57:50] 2025-10-07 18:57:50,426 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 13:57:50] 2025-10-07 18:57:50,427 | INFO     | traces error code: 0
[2025-10-07 13:57:50] 2025-10-07 18:57:50,427 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 13:57:50] 2025-10-07 18:57:50,517 [wrapper] ==== pilot stdout END ====
[2025-10-07 13:57:50] 2025-10-07 18:57:50,519 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 13:57:50] 2025-10-07 18:57:50,520 [wrapper] pilotpid: 1829669
[2025-10-07 13:57:50] 2025-10-07 18:57:50,521 [wrapper] Pilot exit status: 0
[2025-10-07 13:57:50] 2025-10-07 18:57:50,527 [wrapper] pandaids: 6833639947
[2025-10-07 13:57:50] 2025-10-07 18:57:50,550 [wrapper] cleanup supervisor_pilot 1873789 1829670
[2025-10-07 13:57:50] 2025-10-07 18:57:50,551 [wrapper] Test setup, not cleaning
[2025-10-07 13:57:50] 2025-10-07 18:57:50,553 [wrapper] apfmon messages muted
[2025-10-07 13:57:50] 2025-10-07 18:57:50,555 [wrapper] ==== wrapper stdout END ====
[2025-10-07 13:57:50] 2025-10-07 18:57:50,556 [wrapper] ==== wrapper stderr END ====
[2025-10-07 13:57:50]  *** Error codes and diagnostics ***
[2025-10-07 13:57:50]     "exeErrorCode": 0,
[2025-10-07 13:57:50]     "exeErrorDiag": "",
[2025-10-07 13:57:50]     "pilotErrorCode": 0,
[2025-10-07 13:57:50]     "pilotErrorDiag": "",
[2025-10-07 13:57:50]  *** Listing of results directory ***
[2025-10-07 13:57:50] total 388752
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc    552446 Oct  7 05:56 pilot3.tar.gz
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc      5112 Oct  7 06:07 queuedata.json
[2025-10-07 13:57:50] -rwx------. 1 boinc boinc     36292 Oct  7 06:08 runpilot2-wrapper.sh
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc       100 Oct  7 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 13:57:50] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 13:31 run_atlas
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc       105 Oct  7 13:31 job.xml
[2025-10-07 13:57:50] -rw-r--r--. 2 boinc boinc 211760267 Oct  7 13:31 EVNT.46376901._003671.pool.root.1
[2025-10-07 13:57:50] -rw-r--r--. 2 boinc boinc     15120 Oct  7 13:31 start_atlas.sh
[2025-10-07 13:57:50] drwxrwx--x. 1 boinc boinc        76 Oct  7 13:31 shared
[2025-10-07 13:57:50] -rw-r--r--. 2 boinc boinc    565612 Oct  7 13:31 input.tar.gz
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc     10054 Oct  7 13:31 init_data.xml
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc         0 Oct  7 13:31 boinc_setup_complete
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc         0 Oct  7 13:31 boinc_lockfile
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc      2519 Oct  7 13:31 pandaJob.out
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc    977512 Oct  7 13:31 agis_schedconf.cvmfs.json
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc   1560401 Oct  7 13:31 agis_ddmendpoints.agis.ALL.json
[2025-10-07 13:57:50] drwx------. 1 boinc boinc       368 Oct  7 13:31 pilot3
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc       529 Oct  7 13:56 boinc_task_state.xml
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc 181238960 Oct  7 13:56 HITS.46376905._133347.pool.root.1
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc      1033 Oct  7 13:56 memory_monitor_summary.json
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc    343200 Oct  7 13:56 log.46376905._133347.job.log.tgz.1
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc      7797 Oct  7 13:56 heartbeat.json
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc        95 Oct  7 13:57 pilot_heartbeat.json
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc      8192 Oct  7 13:57 boinc_mmap_file
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc        27 Oct  7 13:57 wrapper_checkpoint.txt
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc      5011 Oct  7 13:57 pilotlog.txt
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc    259972 Oct  7 13:57 log.46376905._133347.job.log.1
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc       357 Oct  7 13:57 output.list
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc       620 Oct  7 13:57 runtime_log
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc    624640 Oct  7 13:57 result.tar.gz
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc      8727 Oct  7 13:57 runtime_log.err
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc       652 Oct  7 13:57 BmwKDmFjKQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmttWNDmDOP4Rn.diag
[2025-10-07 13:57:50] -rw-r--r--. 1 boinc boinc     21712 Oct  7 13:57 stderr.txt
[2025-10-07 13:57:50] HITS file was successfully produced:
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc 181238960 Oct  7 13:56 shared/HITS.pool.root.1
[2025-10-07 13:57:50]  *** Contents of shared directory: ***
[2025-10-07 13:57:50] total 384976
[2025-10-07 13:57:50] -rw-r--r--. 2 boinc boinc 211760267 Oct  7 13:31 ATLAS.root_0
[2025-10-07 13:57:50] -rw-r--r--. 2 boinc boinc     15120 Oct  7 13:31 start_atlas.sh
[2025-10-07 13:57:50] -rw-r--r--. 2 boinc boinc    565612 Oct  7 13:31 input.tar.gz
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc 181238960 Oct  7 13:56 HITS.pool.root.1
[2025-10-07 13:57:50] -rw-------. 1 boinc boinc    624640 Oct  7 13:57 result.tar.gz
13:57:52 (1825771): run_atlas exited; CPU time 15773.608322
13:57:52 (1825771): called boinc_finish(0)

</stderr_txt>
]]>

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