Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:47:24 (1636096): wrapper (7.7.26015): starting
00:47:24 (1636096): wrapper: running run_atlas (--nthreads 4)
[2025-10-08 00:47:24] Arguments: --nthreads 4
[2025-10-08 00:47:24] Threads: 4
[2025-10-08 00:47:24] Checking for CVMFS
[2025-10-08 00:47:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 00:47:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 00:47:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 00:47:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 00:47:24] 2.9.2.0 798349 2095 93512 151450 2 57 28625749 36864000 0 130560 0 2188951 99.992 72335 1169 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-08 00:47:24] CVMFS is ok
[2025-10-08 00:47:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-08 00:47:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-08 00:47:24] Further information can be found at the LHC@home message board.
[2025-10-08 00:47:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 00:47:24] Checking for apptainer binary...
[2025-10-08 00:47:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 00:47:24] Running /usr/bin/apptainer --version
[2025-10-08 00:47:24] apptainer version 1.4.1-1.1
[2025-10-08 00:47:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 00:47:24] thA325
[2025-10-08 00:47:24] apptainer works
[2025-10-08 00:47:24] Set ATHENA_PROC_NUMBER=4
[2025-10-08 00:47:24] Set ATHENA_CORE_NUMBER=4
[2025-10-08 00:47:24] Starting ATLAS job with PandaID=6833428784
[2025-10-08 00:47:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 01:50:50]  *** The last 200 lines of the pilot log: ***
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 01:50:50] 2025-10-07 23:50:18,754 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 01:50:50] 2025-10-07 23:50:18,755 | INFO     | job 6833428784 has completed (purged errors)
[2025-10-08 01:50:50] 2025-10-07 23:50:18,755 | INFO     | overall cleanup function is called
[2025-10-08 01:50:50] 2025-10-07 23:50:19,761 | INFO     | --- collectZombieJob: --- 10, [1646461]
[2025-10-08 01:50:50] 2025-10-07 23:50:19,761 | INFO     | zombie collector waiting for pid 1646461
[2025-10-08 01:50:50] 2025-10-07 23:50:19,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 01:50:50] 2025-10-07 23:50:19,762 | INFO     | collected zombie processes
[2025-10-08 01:50:50] 2025-10-07 23:50:19,762 | INFO     | will attempt to kill all subprocesses of pid=1646461
[2025-10-08 01:50:50] 2025-10-07 23:50:19,807 | INFO     | process IDs to be killed: [1646461] (in reverse order)
[2025-10-08 01:50:50] 2025-10-07 23:50:19,838 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 01:50:50] 2025-10-07 23:50:19,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 01:50:50] 2025-10-07 23:50:19,839 | INFO     | did not find any defunct processes belonging to 1646461
[2025-10-08 01:50:50] 2025-10-07 23:50:19,840 | INFO     | did not find any defunct processes belonging to 1646461
[2025-10-08 01:50:50] 2025-10-07 23:50:19,841 | INFO     | ready for new job
[2025-10-08 01:50:50] 2025-10-07 23:50:19,841 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 01:50:50] 2025-10-07 23:50:19,841 | INFO     | ***************************************
[2025-10-08 01:50:50] 2025-10-07 23:50:19,841 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 01:50:50] 2025-10-07 23:50:19,841 | INFO     | ***************************************
[2025-10-08 01:50:50] 2025-10-07 23:50:19,841 | INFO     | 
[2025-10-08 01:50:50] 2025-10-07 23:50:19,842 | INFO     | architecture information:
[2025-10-08 01:50:50] 2025-10-07 23:50:19,842 | INFO     | executing command: cat /etc/os-release
[2025-10-08 01:50:50] 2025-10-07 23:50:19,855 | INFO     | cat /etc/os-release:
[2025-10-08 01:50:50] NAME="CentOS Linux"
[2025-10-08 01:50:50] VERSION="7 (Core)"
[2025-10-08 01:50:50] ID="centos"
[2025-10-08 01:50:50] ID_LIKE="rhel fedora"
[2025-10-08 01:50:50] VERSION_ID="7"
[2025-10-08 01:50:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 01:50:50] ANSI_COLOR="0;31"
[2025-10-08 01:50:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 01:50:50] HOME_URL="https://www.centos.org/"
[2025-10-08 01:50:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 01:50:50] 
[2025-10-08 01:50:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 01:50:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 01:50:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 01:50:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 01:50:50] 
[2025-10-08 01:50:50] 2025-10-07 23:50:19,855 | INFO     | ***************************************
[2025-10-08 01:50:50] 2025-10-07 23:50:20,358 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-08 01:50:50] 2025-10-07 23:50:20,375 | INFO     | sufficient remaining disk space (232278458368 B)
[2025-10-08 01:50:50] 2025-10-07 23:50:20,376 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 01:50:50] 2025-10-07 23:50:20,376 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 01:50:50] 2025-10-07 23:50:20,376 | INFO     | update_server=False
[2025-10-08 01:50:50] 2025-10-07 23:50:20,376 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 01:50:50] 2025-10-07 23:50:20,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 01:50:50] 2025-10-07 23:50:20,376 | INFO     | aborting loop
[2025-10-08 01:50:50] 2025-10-07 23:50:20,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 01:50:50] 2025-10-07 23:50:20,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 01:50:50] 2025-10-07 23:50:20,489 | INFO     | all payload control threads have been joined
[2025-10-08 01:50:50] 2025-10-07 23:50:20,784 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 01:50:50] 2025-10-07 23:50:21,381 | INFO     | [job] retrieve thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:21,382 | INFO     | [job] job monitor thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:21,382 | INFO     | [job] queue monitor thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:21,397 | INFO     | all data control threads have been joined
[2025-10-08 01:50:50] 2025-10-07 23:50:21,495 | INFO     | [payload] control thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:21,670 | INFO     | [payload] validate_post thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:21,959 | INFO     | all job control threads have been joined
[2025-10-08 01:50:50] 2025-10-07 23:50:22,070 | INFO     | [job] validate thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,402 | INFO     | [data] control thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,517 | INFO     | [payload] failed_post thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,517 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,790 | INFO     | [data] copytool_out thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,808 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,811 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,824 | INFO     | [data] copytool_in thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:22,964 | INFO     | [job] control thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:24,473 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:30,548 | INFO     | job.realtimelogging is not enabled
[2025-10-08 01:50:50] 2025-10-07 23:50:31,554 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 01:50:50] 2025-10-07 23:50:36,694 | INFO     | [monitor] cgroup control has ended
[2025-10-08 01:50:50] 2025-10-07 23:50:37,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140553863087936)>', '<ExcThread(monitor, started 140552863475456)>']
[2025-10-08 01:50:50] 2025-10-07 23:50:42,448 | INFO     | all workflow threads have been joined
[2025-10-08 01:50:50] 2025-10-07 23:50:42,448 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 01:50:50] 2025-10-07 23:50:42,448 | INFO     | traces error code: 0
[2025-10-08 01:50:50] 2025-10-07 23:50:42,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 01:50:50] 2025-10-07 23:50:50,059 | INFO     | PID=1639885 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-08 01:50:50] 2025-10-07 23:50:50,059 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 01:50:50] 2025-10-07 23:50:50,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 01:50:50] 2025-10-07 23:50:50,060 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 01:50:50] 2025-10-07 23:50:50,060 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 01:50:50] 2025-10-07 23:50:50,060 | INFO     | [monitor] control thread has ended
[2025-10-08 01:50:50] 2025-10-07 23:50:50,124 [wrapper] ==== pilot stdout END ====
[2025-10-08 01:50:50] 2025-10-07 23:50:50,128 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 01:50:50] 2025-10-07 23:50:50,132 [wrapper] pilotpid: 1639885
[2025-10-08 01:50:50] 2025-10-07 23:50:50,135 [wrapper] Pilot exit status: 0
[2025-10-08 01:50:50] 2025-10-07 23:50:50,146 [wrapper] pandaids: 6833428784
[2025-10-08 01:50:50] 2025-10-07 23:50:50,167 [wrapper] cleanup supervisor_pilot 1656685 1639886
[2025-10-08 01:50:50] 2025-10-07 23:50:50,171 [wrapper] Test setup, not cleaning
[2025-10-08 01:50:50] 2025-10-07 23:50:50,174 [wrapper] apfmon messages muted
[2025-10-08 01:50:50] 2025-10-07 23:50:50,178 [wrapper] ==== wrapper stdout END ====
[2025-10-08 01:50:50] 2025-10-07 23:50:50,182 [wrapper] ==== wrapper stderr END ====
[2025-10-08 01:50:50]  *** Error codes and diagnostics ***
[2025-10-08 01:50:50]     "exeErrorCode": 0,
[2025-10-08 01:50:50]     "exeErrorDiag": "",
[2025-10-08 01:50:50]     "pilotErrorCode": 0,
[2025-10-08 01:50:50]     "pilotErrorDiag": "",
[2025-10-08 01:50:50]  *** Listing of results directory ***
[2025-10-08 01:50:50] total 392496
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc    552446 Oct  7 12:05 pilot3.tar.gz
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc      5112 Oct  7 12:12 queuedata.json
[2025-10-08 01:50:50] -rwx------ 1 boinc boinc     36292 Oct  7 12:13 runpilot2-wrapper.sh
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc       100 Oct  8 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 01:50:50] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 00:47 run_atlas
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc       105 Oct  8 00:47 job.xml
[2025-10-08 01:50:50] -rw-r--r-- 2 boinc boinc 216532859 Oct  8 00:47 EVNT.46376901._004936.pool.root.1
[2025-10-08 01:50:50] -rw-r--r-- 2 boinc boinc    565601 Oct  8 00:47 input.tar.gz
[2025-10-08 01:50:50] -rw-r--r-- 2 boinc boinc     15120 Oct  8 00:47 start_atlas.sh
[2025-10-08 01:50:50] drwxrwx--x 2 boinc boinc      4096 Oct  8 00:47 shared
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc         0 Oct  8 00:47 boinc_setup_complete
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc      6370 Oct  8 00:47 init_data.xml
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc         0 Oct  8 00:47 boinc_lockfile
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc      2520 Oct  8 00:47 pandaJob.out
[2025-10-08 01:50:50] -rw------- 1 boinc boinc    979849 Oct  8 00:47 agis_schedconf.cvmfs.json
[2025-10-08 01:50:50] -rw------- 1 boinc boinc   1560401 Oct  8 00:47 agis_ddmendpoints.agis.ALL.json
[2025-10-08 01:50:50] drwx------ 4 boinc boinc      4096 Oct  8 00:47 pilot3
[2025-10-08 01:50:50] -rw------- 1 boinc boinc        95 Oct  8 01:49 pilot_heartbeat.json
[2025-10-08 01:50:50] -rw------- 1 boinc boinc 179907932 Oct  8 01:49 HITS.46376905._132551.pool.root.1
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc       529 Oct  8 01:49 boinc_task_state.xml
[2025-10-08 01:50:50] -rw------- 1 boinc boinc      1019 Oct  8 01:50 memory_monitor_summary.json
[2025-10-08 01:50:50] -rw------- 1 boinc boinc    239065 Oct  8 01:50 log.46376905._132551.job.log.tgz.1
[2025-10-08 01:50:50] -rw------- 1 boinc boinc      7761 Oct  8 01:50 heartbeat.json
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc        27 Oct  8 01:50 wrapper_checkpoint.txt
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc      8192 Oct  8 01:50 boinc_mmap_file
[2025-10-08 01:50:50] -rw------- 1 boinc boinc       747 Oct  8 01:50 pilotlog.txt
[2025-10-08 01:50:50] -rw------- 1 boinc boinc    564450 Oct  8 01:50 log.46376905._132551.job.log.1
[2025-10-08 01:50:50] -rw------- 1 boinc boinc       357 Oct  8 01:50 output.list
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc       620 Oct  8 01:50 runtime_log
[2025-10-08 01:50:50] -rw------- 1 boinc boinc    819200 Oct  8 01:50 result.tar.gz
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc      8777 Oct  8 01:50 runtime_log.err
[2025-10-08 01:50:50] -rw------- 1 boinc boinc       658 Oct  8 01:50 5cXLDmGsJQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmzVLMDmInjBTo.diag
[2025-10-08 01:50:50] -rw-r--r-- 1 boinc boinc     11712 Oct  8 01:50 stderr.txt
[2025-10-08 01:50:50] HITS file was successfully produced:
[2025-10-08 01:50:50] -rw------- 1 boinc boinc 179907932 Oct  8 01:49 shared/HITS.pool.root.1
[2025-10-08 01:50:50]  *** Contents of shared directory: ***
[2025-10-08 01:50:50] total 388528
[2025-10-08 01:50:50] -rw-r--r-- 2 boinc boinc 216532859 Oct  8 00:47 ATLAS.root_0
[2025-10-08 01:50:50] -rw-r--r-- 2 boinc boinc    565601 Oct  8 00:47 input.tar.gz
[2025-10-08 01:50:50] -rw-r--r-- 2 boinc boinc     15120 Oct  8 00:47 start_atlas.sh
[2025-10-08 01:50:50] -rw------- 1 boinc boinc 179907932 Oct  8 01:49 HITS.pool.root.1
[2025-10-08 01:50:50] -rw------- 1 boinc boinc    819200 Oct  8 01:50 result.tar.gz
01:50:51 (1636096): run_atlas exited; CPU time 14041.210112
01:50:51 (1636096): called boinc_finish(0)

</stderr_txt>
]]>

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