Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:47:08 (22931): wrapper (7.7.26015): starting
00:47:08 (22931): wrapper: running run_atlas (--nthreads 8)
[2025-10-08 00:47:08] Arguments: --nthreads 8
[2025-10-08 00:47:08] Threads: 8
[2025-10-08 00:47:08] Checking for CVMFS
[2025-10-08 00:47:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 00:47:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 00:47:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 00:47:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 00:47:11] 2.11.2.0 21130 213815 135708 151450 0 61 20334327 25165824 4632 130560 0 112762830 99.866 64705729 3121 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-08 00:47:11] CVMFS is ok
[2025-10-08 00:47:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 00:47:11] Checking for apptainer binary...
[2025-10-08 00:47:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 00:47:11] Running /usr/bin/apptainer --version
[2025-10-08 00:47:11] apptainer version 1.3.2-1.el7
[2025-10-08 00:47:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 00:47:18] cg-vwn411.simple-grid.lan
[2025-10-08 00:47:18] apptainer works
[2025-10-08 00:47:18] Set ATHENA_PROC_NUMBER=8
[2025-10-08 00:47:18] Set ATHENA_CORE_NUMBER=8
[2025-10-08 00:47:18] Starting ATLAS job with PandaID=6833429199
[2025-10-08 00:47:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 04:43:32]  *** The last 200 lines of the pilot log: ***
[2025-10-08 04:43:32] 2025-10-08 02:42:18,920 | INFO     | sum of square deviations: 3256879670.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,921 | INFO     | sum of deviations: 83778351783.00002
[2025-10-08 04:43:32] 2025-10-08 02:42:18,922 | INFO     | mean x: 1759884579.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,922 | INFO     | mean y: 2422601.105022831
[2025-10-08 04:43:32] 2025-10-08 02:42:18,922 | INFO     | -- intersect: -45267972469.07541
[2025-10-08 04:43:32] 2025-10-08 02:42:18,922 | INFO     | intersect: -45267972469.07541
[2025-10-08 04:43:32] 2025-10-08 02:42:18,922 | INFO     | chi2: 5.986938715952144
[2025-10-08 04:43:32] 2025-10-08 02:42:18,923 | INFO     | sum of square deviations: 3038856977.5
[2025-10-08 04:43:32] 2025-10-08 02:42:18,925 | INFO     | sum of deviations: 95880412013.00002
[2025-10-08 04:43:32] 2025-10-08 02:42:18,925 | INFO     | mean x: 1759884426.5
[2025-10-08 04:43:32] 2025-10-08 02:42:18,925 | INFO     | mean y: 2430879.23364486
[2025-10-08 04:43:32] 2025-10-08 02:42:18,925 | INFO     | -- intersect: -55524514007.42555
[2025-10-08 04:43:32] 2025-10-08 02:42:18,925 | INFO     | intersect: -55524514007.42555
[2025-10-08 04:43:32] 2025-10-08 02:42:18,925 | INFO     | chi2: 5.262767174405985
[2025-10-08 04:43:32] 2025-10-08 02:42:18,926 | INFO     | current chi2=5.262767174405985 (change=12.095856929629338 %)
[2025-10-08 04:43:32] 2025-10-08 02:42:18,926 | INFO     | right removable region: 213
[2025-10-08 04:43:32] 2025-10-08 02:42:18,926 | INFO     | sum of square deviations: 3038856977.5
[2025-10-08 04:43:32] 2025-10-08 02:42:18,928 | INFO     | sum of deviations: 10484413704.500002
[2025-10-08 04:43:32] 2025-10-08 02:42:18,928 | INFO     | mean x: 1759884731.5
[2025-10-08 04:43:32] 2025-10-08 02:42:18,928 | INFO     | mean y: 2473804.042056075
[2025-10-08 04:43:32] 2025-10-08 02:42:18,928 | INFO     | -- intersect: -6069335344.560399
[2025-10-08 04:43:32] 2025-10-08 02:42:18,928 | INFO     | intersect: -6069335344.560399
[2025-10-08 04:43:32] 2025-10-08 02:42:18,928 | INFO     | chi2: 1.4871109816992494
[2025-10-08 04:43:32] 2025-10-08 02:42:18,929 | INFO     | current chi2=1.4871109816992494 (change=75.1607448772299 %)
[2025-10-08 04:43:32] 2025-10-08 02:42:18,929 | INFO     | sum of square deviations: 2830787960.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,937 | INFO     | sum of deviations: -12473365278.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,937 | INFO     | mean x: 1759884884.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,937 | INFO     | mean y: 2490462.5358851673
[2025-10-08 04:43:32] 2025-10-08 02:42:18,937 | INFO     | -- intersect: 7757111195.542908
[2025-10-08 04:43:32] 2025-10-08 02:42:18,937 | INFO     | intersect: 7757111195.542908
[2025-10-08 04:43:32] 2025-10-08 02:42:18,938 | INFO     | chi2: 0.8363608079494987
[2025-10-08 04:43:32] 2025-10-08 02:42:18,938 | INFO     | current chi2=0.8363608079494987 (change=43.759355001613265 %)
[2025-10-08 04:43:32] 2025-10-08 02:42:18,938 | INFO     | sum of square deviations: 2632440055.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,940 | INFO     | sum of deviations: -9364543008.5
[2025-10-08 04:43:32] 2025-10-08 02:42:18,940 | INFO     | mean x: 1759885036.5
[2025-10-08 04:43:32] 2025-10-08 02:42:18,940 | INFO     | mean y: 2488030.3088235296
[2025-10-08 04:43:32] 2025-10-08 02:42:18,940 | INFO     | -- intersect: 6263036711.3764515
[2025-10-08 04:43:32] 2025-10-08 02:42:18,940 | INFO     | intersect: 6263036711.3764515
[2025-10-08 04:43:32] 2025-10-08 02:42:18,941 | INFO     | chi2: 0.8140854874024736
[2025-10-08 04:43:32] 2025-10-08 02:42:18,941 | INFO     | current chi2=0.8140854874024736 (change=2.6633625506242304 %)
[2025-10-08 04:43:32] 2025-10-08 02:42:18,941 | INFO     | left removable region: 30
[2025-10-08 04:43:32] 2025-10-08 02:42:18,941 | INFO     | sum of square deviations: 1900284932.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,943 | INFO     | sum of deviations: 4130413333.999998
[2025-10-08 04:43:32] 2025-10-08 02:42:18,943 | INFO     | mean x: 1759885311.0
[2025-10-08 04:43:32] 2025-10-08 02:42:18,943 | INFO     | mean y: 2498494.180327869
[2025-10-08 04:43:32] 2025-10-08 02:42:18,943 | INFO     | -- intersect: -3822745621.8242364
[2025-10-08 04:43:32] 2025-10-08 02:42:18,950 | INFO     | intersect: -3822745621.8242364
[2025-10-08 04:43:32] 2025-10-08 02:42:18,951 | INFO     | chi2: 0.0003381056864077364
[2025-10-08 04:43:32] 2025-10-08 02:42:18,951 | INFO     | -- intersect: -3822745621.8242364
[2025-10-08 04:43:32] 2025-10-08 02:42:18,951 | INFO     | current memory leak: 2.17 B/s (using 183 data points, chi2=0.00)
[2025-10-08 04:43:32] 2025-10-08 02:42:18,952 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-08 04:43:32] 2025-10-08 02:42:18,952 | INFO     | ..............................
[2025-10-08 04:43:32] 2025-10-08 02:42:18,952 | INFO     | . Timing measurements:
[2025-10-08 04:43:32] 2025-10-08 02:42:18,952 | INFO     | . get job = 0 s
[2025-10-08 04:43:32] 2025-10-08 02:42:18,952 | INFO     | . initial setup = 8 s
[2025-10-08 04:43:32] 2025-10-08 02:42:18,952 | INFO     | . payload setup = 123 s
[2025-10-08 04:43:32] 2025-10-08 02:42:18,953 | INFO     | . stage-in = 0 s
[2025-10-08 04:43:32] 2025-10-08 02:42:18,953 | INFO     | . payload execution = 13469 s
[2025-10-08 04:43:32] 2025-10-08 02:42:18,953 | INFO     | . stage-out = 3 s
[2025-10-08 04:43:32] 2025-10-08 02:42:18,953 | INFO     | . log creation = 1 s
[2025-10-08 04:43:32] 2025-10-08 02:42:18,953 | INFO     | ..............................
[2025-10-08 04:43:32] 2025-10-08 02:42:19,091 | INFO     | time since job start (13882s) is within the limit (172800.0s)
[2025-10-08 04:43:32] 2025-10-08 02:42:19,358 | INFO     | 
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | job summary report
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | --------------------------------------------------
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | PanDA job id: 6833429199
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | task id: 46376905
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | errors: (none)
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | pilot state: finished 
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | transexitcode: 0
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | exeerrorcode: 0
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | exeerrordiag: 
[2025-10-08 04:43:32] 2025-10-08 02:42:19,359 | INFO     | exitcode: 0
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | exitmsg: OK
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | cpuconsumptiontime: 50129 s
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | nevents: 400
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | neventsw: 0
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | pid: 1164
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | pgrp: 1164
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | corecount: 8
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | event service: False
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | sizes: {0: 2348647, 1: 2348846, 12: 2348846, 23: 2348874, 33: 2348902, 44: 2348958, 55: 2349114, 66: 2349142, 76: 2349170, 87: 2349226, 90: 2349516, 98: 2349824, 1
[2025-10-08 04:43:32] 2025-10-08 02:42:19,360 | INFO     | --------------------------------------------------
[2025-10-08 04:43:32] 2025-10-08 02:42:19,361 | INFO     | 
[2025-10-08 04:43:32] 2025-10-08 02:42:19,361 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-10-08 04:43:32] 2025-10-08 02:42:19,711 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | job 6833429199 has completed (purged errors)
[2025-10-08 04:43:32] 2025-10-08 02:42:19,713 | INFO     | overall cleanup function is called
[2025-10-08 04:43:32] 2025-10-08 02:42:20,721 | INFO     | --- collectZombieJob: --- 10, [1164]
[2025-10-08 04:43:32] 2025-10-08 02:42:20,722 | INFO     | zombie collector waiting for pid 1164
[2025-10-08 04:43:32] 2025-10-08 02:42:20,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 04:43:32] 2025-10-08 02:42:20,722 | INFO     | collected zombie processes
[2025-10-08 04:43:32] 2025-10-08 02:42:20,722 | INFO     | will attempt to kill all subprocesses of pid=1164
[2025-10-08 04:43:32] 2025-10-08 02:42:20,852 | INFO     | process IDs to be killed: [1164] (in reverse order)
[2025-10-08 04:43:32] 2025-10-08 02:42:21,544 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 04:43:32] 2025-10-08 02:42:21,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 04:43:32] 2025-10-08 02:42:21,556 | INFO     | did not find any defunct processes belonging to 1164
[2025-10-08 04:43:32] 2025-10-08 02:42:21,559 | INFO     | did not find any defunct processes belonging to 1164
[2025-10-08 04:43:32] 2025-10-08 02:42:21,559 | INFO     | ready for new job
[2025-10-08 04:43:32] 2025-10-08 02:42:21,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 04:43:32] 2025-10-08 02:42:21,561 | INFO     | ***************************************
[2025-10-08 04:43:32] 2025-10-08 02:42:21,562 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 04:43:32] 2025-10-08 02:42:21,562 | INFO     | ***************************************
[2025-10-08 04:43:32] 2025-10-08 02:42:21,562 | INFO     | 
[2025-10-08 04:43:32] 2025-10-08 02:42:21,562 | INFO     | pilot is running in a VM
[2025-10-08 04:43:32] 2025-10-08 02:42:21,563 | INFO     | architecture information:
[2025-10-08 04:43:32] 2025-10-08 02:42:21,570 | INFO     | executing command: cat /etc/os-release
[2025-10-08 04:43:32] 2025-10-08 02:42:21,780 | INFO     | cat /etc/os-release:
[2025-10-08 04:43:32] NAME="CentOS Linux"
[2025-10-08 04:43:32] VERSION="7 (Core)"
[2025-10-08 04:43:32] ID="centos"
[2025-10-08 04:43:32] ID_LIKE="rhel fedora"
[2025-10-08 04:43:32] VERSION_ID="7"
[2025-10-08 04:43:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 04:43:32] ANSI_COLOR="0;31"
[2025-10-08 04:43:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 04:43:32] HOME_URL="https://www.centos.org/"
[2025-10-08 04:43:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 04:43:32] 
[2025-10-08 04:43:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 04:43:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 04:43:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 04:43:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 04:43:32] 
[2025-10-08 04:43:32] 2025-10-08 02:42:21,780 | INFO     | ***************************************
[2025-10-08 04:43:32] 2025-10-08 02:42:22,284 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-10-08 04:43:32] 2025-10-08 02:42:22,481 | INFO     | sufficient remaining disk space (496144220160 B)
[2025-10-08 04:43:32] 2025-10-08 02:42:22,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 04:43:32] 2025-10-08 02:42:22,482 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 04:43:32] 2025-10-08 02:42:22,482 | INFO     | update_server=False
[2025-10-08 04:43:32] 2025-10-08 02:42:22,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 04:43:32] 2025-10-08 02:42:22,756 | INFO     | all payload control threads have been joined
[2025-10-08 04:43:32] 2025-10-08 02:42:22,758 | INFO     | all data control threads have been joined
[2025-10-08 04:43:32] 2025-10-08 02:42:22,967 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-08 04:43:32] 2025-10-08 02:42:22,968 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-08 04:43:32] 2025-10-08 02:42:22,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 04:43:32] 2025-10-08 02:42:22,968 | INFO     | will abort loop
[2025-10-08 04:43:32] 2025-10-08 02:42:23,081 | INFO     | all job control threads have been joined
[2025-10-08 04:43:32] 2025-10-08 02:42:23,489 | INFO     | [job] retrieve thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:23,531 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:23,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 04:43:32] 2025-10-08 02:42:23,763 | INFO     | [data] control thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:23,765 | INFO     | [payload] control thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:23,808 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:23,962 | INFO     | [payload] failed_post thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:23,973 | INFO     | [job] job monitor thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:23,998 | INFO     | [payload] validate_post thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:24,088 | INFO     | [job] control thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:24,091 | INFO     | [data] copytool_in thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:24,105 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 04:43:32] 2025-10-08 02:42:24,382 | INFO     | [job] validate thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:24,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:24,768 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:25,101 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 04:43:32] 2025-10-08 02:42:25,111 | INFO     | [job] queue monitor thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:25,670 | INFO     | [data] copytool_out thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:29,110 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 04:43:32] 2025-10-08 02:42:52,278 | INFO     | PID=26883 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 04:43:32] 2025-10-08 02:42:52,279 | INFO     | .. there are 9 such processes running
[2025-10-08 04:43:32] 2025-10-08 02:42:52,279 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 04:43:32] 2025-10-08 02:42:52,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 04:43:32] 2025-10-08 02:42:52,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 04:43:32] 2025-10-08 02:43:21,165 | INFO     | [monitor] cgroup control has ended
[2025-10-08 04:43:32] 2025-10-08 02:43:22,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661778192192)>', '<ExcThread(monitor, started 140661479155456)>']
[2025-10-08 04:43:32] 2025-10-08 02:43:22,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 04:43:32] 2025-10-08 02:43:22,456 | INFO     | [monitor] control thread has ended
[2025-10-08 04:43:32] 2025-10-08 02:43:27,149 | INFO     | all workflow threads have been joined
[2025-10-08 04:43:32] 2025-10-08 02:43:27,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 04:43:32] 2025-10-08 02:43:27,150 | INFO     | traces error code: 0
[2025-10-08 04:43:32] 2025-10-08 02:43:27,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 04:43:32] 2025-10-08 02:43:27,599 [wrapper] ==== pilot stdout END ====
[2025-10-08 04:43:32] 2025-10-08 02:43:27,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 04:43:32] 2025-10-08 02:43:27,830 [wrapper] pilotpid: 26883
[2025-10-08 04:43:32] 2025-10-08 02:43:27,879 [wrapper] Pilot exit status: 0
[2025-10-08 04:43:32] 2025-10-08 02:43:28,390 [wrapper] pandaids: 6833429199
[2025-10-08 04:43:32] 2025-10-08 02:43:29,286 [wrapper] cleanup supervisor_pilot 25031 26884
[2025-10-08 04:43:32] 2025-10-08 02:43:29,409 [wrapper] Test setup, not cleaning
[2025-10-08 04:43:32] 2025-10-08 02:43:29,535 [wrapper] apfmon messages muted
[2025-10-08 04:43:32] 2025-10-08 02:43:29,634 [wrapper] ==== wrapper stdout END ====
[2025-10-08 04:43:32] 2025-10-08 02:43:29,721 [wrapper] ==== wrapper stderr END ====
[2025-10-08 04:43:32]  *** Error codes and diagnostics ***
[2025-10-08 04:43:32]     "exeErrorCode": 0,
[2025-10-08 04:43:32]     "exeErrorDiag": "",
[2025-10-08 04:43:32]     "pilotErrorCode": 0,
[2025-10-08 04:43:32]     "pilotErrorDiag": "",
[2025-10-08 04:43:32]  *** Listing of results directory ***
[2025-10-08 04:43:32] total 393612
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc    552446 Oct  7 12:41 pilot3.tar.gz
[2025-10-08 04:43:32] -rwx------. 1 boinc boinc     36292 Oct  7 12:42 runpilot2-wrapper.sh
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc      5112 Oct  7 12:42 queuedata.json
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc       100 Oct  8 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 04:43:32] -rwxr-xr-x. 1 boinc boinc      7986 Oct  8 00:47 run_atlas
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc       105 Oct  8 00:47 job.xml
[2025-10-08 04:43:32] -rw-r--r--. 2 boinc boinc 213352640 Oct  8 00:47 EVNT.46376901._004949.pool.root.1
[2025-10-08 04:43:32] -rw-r--r--. 2 boinc boinc     15120 Oct  8 00:47 start_atlas.sh
[2025-10-08 04:43:32] drwxrwx--x. 2 boinc boinc        68 Oct  8 00:47 shared
[2025-10-08 04:43:32] -rw-r--r--. 2 boinc boinc    565593 Oct  8 00:47 input.tar.gz
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc      6391 Oct  8 00:47 init_data.xml
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc         0 Oct  8 00:47 boinc_lockfile
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc      2520 Oct  8 00:47 pandaJob.out
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc    979849 Oct  8 00:50 agis_schedconf.cvmfs.json
[2025-10-08 04:43:32] drwx------. 4 boinc boinc      4096 Oct  8 00:50 pilot3
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc 181237346 Oct  8 04:39 HITS.46376905._132875.pool.root.1
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc       531 Oct  8 04:39 boinc_task_state.xml
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc      1014 Oct  8 04:40 memory_monitor_summary.json
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc   1560401 Oct  8 04:40 agis_ddmendpoints.agis.ALL.json
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc    434856 Oct  8 04:40 log.46376905._132875.job.log.tgz.1
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc        95 Oct  8 04:42 pilot_heartbeat.json
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc      7772 Oct  8 04:42 heartbeat.json
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc      5070 Oct  8 04:43 pilotlog.txt
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc   1855892 Oct  8 04:43 log.46376905._132875.job.log.1
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc       357 Oct  8 04:43 output.list
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc       620 Oct  8 04:43 runtime_log
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc   2314240 Oct  8 04:43 result.tar.gz
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc       656 Oct  8 04:43 YQNNDmMKKQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZXLMDmYFhJFm.diag
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc      8703 Oct  8 04:43 runtime_log.err
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc        28 Oct  8 04:43 wrapper_checkpoint.txt
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc      8192 Oct  8 04:43 boinc_mmap_file
[2025-10-08 04:43:32] -rw-r--r--. 1 boinc boinc     20669 Oct  8 04:43 stderr.txt
[2025-10-08 04:43:32] HITS file was successfully produced:
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc 181237346 Oct  8 04:39 shared/HITS.pool.root.1
[2025-10-08 04:43:32]  *** Contents of shared directory: ***
[2025-10-08 04:43:32] total 388180
[2025-10-08 04:43:32] -rw-r--r--. 2 boinc boinc 213352640 Oct  8 00:47 ATLAS.root_0
[2025-10-08 04:43:32] -rw-r--r--. 2 boinc boinc     15120 Oct  8 00:47 start_atlas.sh
[2025-10-08 04:43:32] -rw-r--r--. 2 boinc boinc    565593 Oct  8 00:47 input.tar.gz
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc 181237346 Oct  8 04:39 HITS.pool.root.1
[2025-10-08 04:43:32] -rw-------. 1 boinc boinc   2314240 Oct  8 04:43 result.tar.gz
04:43:33 (22931): run_atlas exited; CPU time 50322.239411
04:43:33 (22931): called boinc_finish(0)

</stderr_txt>
]]>

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