Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-07 14:55:46 (11824): vboxwrapper version 26210
2025-10-07 14:55:46 (11824): BOINC client version: 8.0.2
2025-10-07 14:55:47 (11824): Detected: VirtualBox VboxManage Interface (Version: 6.1.18)
2025-10-07 14:55:48 (11824): Successfully copied 'init_data.xml' to the shared directory.
2025-10-07 14:55:48 (11824): Create VM. (boinc_e2af1e21ff44575b, slot#0)
2025-10-07 14:55:48 (11824): Setting Memory Size for VM. (5900MB)
2025-10-07 14:55:49 (11824): Setting CPU Count for VM. (2)
2025-10-07 14:55:49 (11824): Setting Chipset Options for VM.
2025-10-07 14:55:49 (11824): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-07 14:55:50 (11824): Setting Boot Options for VM.
2025-10-07 14:55:50 (11824): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-07 14:55:50 (11824): Enabling VM Network Access.
2025-10-07 14:55:51 (11824): Disabling USB Support for VM.
2025-10-07 14:55:51 (11824): Disabling COM Port Support for VM.
2025-10-07 14:55:51 (11824): Disabling LPT Port Support for VM.
2025-10-07 14:55:52 (11824): Disabling Audio Support for VM.
2025-10-07 14:55:52 (11824): Disabling Clipboard Support for VM.
2025-10-07 14:55:52 (11824): Disabling Drag and Drop Support for VM.
2025-10-07 14:55:53 (11824): Adding storage controller(s) to VM.
2025-10-07 14:55:53 (11824): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-07 14:55:54 (11824): Adding VirtualBox Guest Additions to VM.
2025-10-07 14:55:54 (11824): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-07 14:55:55 (11824): forwarding host port 63109 to guest port 80
2025-10-07 14:55:55 (11824): Enabling remote desktop for VM.
2025-10-07 14:55:55 (11824): Enabling shared directory for VM.
2025-10-07 14:55:56 (11824): Starting VM using VBoxManage interface. (boinc_e2af1e21ff44575b, slot#0)
2025-10-07 14:56:04 (11824): Successfully started VM. (PID = '7708')
2025-10-07 14:56:04 (11824): Reporting VM Process ID to BOINC.
2025-10-07 14:56:04 (11824): Guest Log: BIOS: VirtualBox 6.1.18
2025-10-07 14:56:04 (11824): Guest Log: CPUID EDX: 0x178bfbff
2025-10-07 14:56:04 (11824): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-07 14:56:04 (11824): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-07 14:56:04 (11824): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-07 14:56:04 (11824): Detected: Web Application Enabled (http://localhost:63109)
2025-10-07 14:56:04 (11824): Detected: Remote Desktop Enabled (localhost:63110)
2025-10-07 14:56:05 (11824): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 14:56:13 (11824): Preference change detected
2025-10-07 14:56:13 (11824): Setting CPU throttle for VM. (100%)
2025-10-07 14:56:13 (11824): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-07 14:56:14 (11824): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 14:56:15 (11824): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-07 14:56:15 (11824): Guest Log: BIOS: Booting from Hard Disk...
2025-10-07 14:56:18 (11824): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-07 14:56:18 (11824): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-07 14:56:18 (11824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-07 14:56:24 (11824): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-07 14:56:24 (11824): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-07 14:56:44 (11824): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.000202 main     Log opened 2025-10-07T14:56:34.313832000Z
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.000342 main     OS Product: Linux
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.000404 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.000442 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.000492 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.000494 main     Process ID: 1323
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.000494 main     Package type: LINUX_64BITS_GENERIC
2025-10-07 14:56:44 (11824): Guest Log: 00:00:00.003313 main     5.2.32 r132073 started. Verbose level = 0
2025-10-07 14:56:45 (11824): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-07 14:56:45 (11824): Guest Log: [INFO] Mounting shared directory
2025-10-07 14:56:45 (11824): Guest Log: [INFO] Checking for init_data.xml
2025-10-07 14:56:54 (11824): Guest Log: 00:00:10.031044 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 180 244 897 000ns (GuestNow=1 759 841 814 074 863 000 ns GuestLast=1 759 848 994 319 760 000 ns fSetTimeLastLoop=true )
2025-10-07 14:57:17 (11824): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-07 14:57:17 (11824): Guest Log: [INFO] Detected branch: prod
2025-10-07 14:57:18 (11824): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-07 14:57:18 (11824): Guest Log: Copying input files
2025-10-07 14:57:21 (11824): Guest Log: Copied input files into RunAtlas.
2025-10-07 14:57:21 (11824): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-07 14:57:30 (11824): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-07 14:57:30 (11824): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-07 14:57:30 (11824): Guest Log: 2.6.3.0 1619 0 29520 151434 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-07 14:57:32 (11824): Guest Log: copied the webapp to /var/www
2025-10-07 14:57:32 (11824): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-07 14:57:32 (11824): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-07 14:57:33 (11824): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-07 14:57:33 (11824): Guest Log:  *** Starting ATLAS job. (PandaID=6833174124 taskID=46376905) ***
2025-10-07 16:36:24 (11824): Status Report: Elapsed Time: '6000.000000'
2025-10-07 16:36:24 (11824): Status Report: CPU Time: '11353.953125'
2025-10-07 17:32:44 (11824): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 17:33:04 (11824): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 18:16:59 (11824): Status Report: Elapsed Time: '12000.000000'
2025-10-07 18:16:59 (11824): Status Report: CPU Time: '23302.796875'
2025-10-07 19:57:09 (11824): Status Report: Elapsed Time: '18000.000000'
2025-10-07 19:57:09 (11824): Status Report: CPU Time: '35244.656250'
2025-10-07 21:37:20 (11824): Status Report: Elapsed Time: '24000.000000'
2025-10-07 21:37:20 (11824): Status Report: CPU Time: '47184.687500'
2025-10-07 23:17:33 (11824): Status Report: Elapsed Time: '30000.000000'
2025-10-07 23:17:33 (11824): Status Report: CPU Time: '59133.046875'
2025-10-07 23:49:54 (11824): Guest Log:  *** Job finished ***
2025-10-07 23:49:54 (11824): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:19,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:19,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:39,357 | INFO     | [monitor] cgroup control has ended
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:39,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140688637294400)>', '<ExcThread(monitor, started 140688196876032)>']
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:40,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:40,360 | INFO     | [monitor] control thread has ended
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:44,986 | INFO     | all workflow threads have been joined
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:44,986 | INFO     | end of generic workflow (traces error code: 0)
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:44,987 | INFO     | traces error code: 0
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:44,987 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,113 [wrapper] ==== pilot stdout END ====
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,123 [wrapper] ==== wrapper stdout RESUME ====
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,134 [wrapper] pilotpid: 5971
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,144 [wrapper] Pilot exit status: 0
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,178 [wrapper] pandaids: 6833174124
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,226 [wrapper] cleanup supervisor_pilot  9304 5972
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,236 [wrapper] Test setup, not cleaning
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,247 [wrapper] apfmon messages muted
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,255 [wrapper] ==== wrapper stdout END ====
2025-10-07 23:49:54 (11824): Guest Log: 2025-10-07 21:49:45,263 [wrapper] ==== wrapper stderr END ====
2025-10-07 23:49:54 (11824): Guest Log:  *** Error codes and diagnostics ***
2025-10-07 23:49:54 (11824): Guest Log:     "exeErrorCode": 0,
2025-10-07 23:49:54 (11824): Guest Log:     "exeErrorDiag": "",
2025-10-07 23:49:54 (11824): Guest Log:     "pilotErrorCode": 0,
2025-10-07 23:49:54 (11824): Guest Log:     "pilotErrorDiag": "",
2025-10-07 23:49:54 (11824): Guest Log:  *** Listing of results directory ***
2025-10-07 23:49:54 (11824): Guest Log: total 185048
2025-10-07 23:49:54 (11824): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  7 07:34 runpilot2-wrapper.sh
2025-10-07 23:49:54 (11824): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  7 07:34 queuedata.json
2025-10-07 23:49:54 (11824): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  7 07:34 pilot3.tar.gz
2025-10-07 23:49:54 (11824): Guest Log: -rwxr-xr-x. 1 atlas atlas      9107 Oct  7 12:57 init_data.xml
2025-10-07 23:49:54 (11824): Guest Log: -rwxr-xr-x. 1 atlas atlas    565594 Oct  7 12:57 input.tar.gz
2025-10-07 23:49:54 (11824): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  7 12:57 start_atlas.sh
2025-10-07 23:49:54 (11824): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  7 12:57 EVNT.46376901._004857.pool.root.1 -> /data/./ATLAS.root_0
2025-10-07 23:49:54 (11824): Guest Log: -rw-r--r--. 1 atlas atlas      2521 Oct  7 12:57 pandaJob.out
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas    975010 Oct  7 12:58 agis_schedconf.cvmfs.json
2025-10-07 23:49:54 (11824): Guest Log: drwx------. 4 atlas atlas      4096 Oct  7 12:58 pilot3
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas 175731293 Oct  7 21:48 HITS.46376905._130386.pool.root.1
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas      1028 Oct  7 21:48 memory_monitor_summary.json
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  7 21:48 agis_ddmendpoints.agis.ALL.json
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas    615331 Oct  7 21:48 log.46376905._130386.job.log.tgz.1
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas      7824 Oct  7 21:48 heartbeat.json
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas        95 Oct  7 21:49 pilot_heartbeat.json
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas      4877 Oct  7 21:49 pilotlog.txt
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas   4350809 Oct  7 21:49 log.46376905._130386.job.log.1
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas       357 Oct  7 21:49 output.list
2025-10-07 23:49:54 (11824): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  7 21:49 runtime_log
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas   4986880 Oct  7 21:49 result.tar.gz
2025-10-07 23:49:54 (11824): Guest Log: -rw-r--r--. 1 atlas atlas      8646 Oct  7 21:49 runtime_log.err
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas       661 Oct  7 21:49 oWRLDmqOHQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvELMDmeVmHEo.diag
2025-10-07 23:49:54 (11824): Guest Log: Looking for outputfile HITS.46376905._130386.pool.root.1
2025-10-07 23:49:54 (11824): Guest Log: HITS file was successfully produced
2025-10-07 23:49:54 (11824): Guest Log: -rw-------. 1 atlas atlas 175731293 Oct  7 21:48 /home/atlas/RunAtlas/HITS.46376905._130386.pool.root.1
2025-10-07 23:49:56 (11824): Guest Log: Successfully finished the ATLAS job!
2025-10-07 23:49:56 (11824): Guest Log: Copying the results back to the shared directory!
2025-10-07 23:49:56 (11824): Guest Log:  *** Contents of shared directory: ***
2025-10-07 23:49:56 (11824): Guest Log: total 385496
2025-10-07 23:49:56 (11824): Guest Log: -rwxrwxrwx. 1 root root 213423963 Oct  7 12:55 ATLAS.root_0
2025-10-07 23:49:56 (11824): Guest Log: -rwxrwxrwx. 1 root root 175731293 Oct  7  2025 HITS.pool.root.1
2025-10-07 23:49:56 (11824): Guest Log: -rwxrwxrwx. 1 root root      9107 Oct  7 12:55 init_data.xml
2025-10-07 23:49:56 (11824): Guest Log: -rwxrwxrwx. 1 root root    565594 Oct  7 12:54 input.tar.gz
2025-10-07 23:49:56 (11824): Guest Log: -rwxrwxrwx. 1 root root   4986880 Oct  7  2025 result.tar.gz
2025-10-07 23:49:56 (11824): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  7 12:54 start_atlas.sh
2025-10-07 23:49:56 (11824): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-07 23:49:56 (11824): VM Completion File Detected.
2025-10-07 23:49:56 (11824): Powering off VM.
2025-10-07 23:49:57 (11824): Successfully stopped VM.
2025-10-07 23:49:57 (11824): Deregistering VM. (boinc_e2af1e21ff44575b, slot#0)
2025-10-07 23:49:57 (11824): Removing network bandwidth throttle group from VM.
2025-10-07 23:49:58 (11824): Removing VM from VirtualBox.
2025-10-07 23:50:03 (11824): called boinc_finish(0)

</stderr_txt>
]]>

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