Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:51:07 (3954908): wrapper (7.7.26015): starting
13:51:07 (3954908): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 13:51:07] Arguments: --nthreads 12
[2025-10-07 13:51:07] Threads: 12
[2025-10-07 13:51:07] Checking for CVMFS
[2025-10-07 13:51:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 13:51:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 13:51:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 13:51:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 13:51:08] 2.13.2.0 7258 7303 62752 151444 0 188 4885112 6144001 2712 130560 0 44429288 99.999 239844 241 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-07 13:51:08] CVMFS is ok
[2025-10-07 13:51:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 13:51:08] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-07 13:51:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-07 13:51:08] Further information can be found at the LHC@home message board.
[2025-10-07 13:51:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 13:51:08] Checking for apptainer binary...
[2025-10-07 13:51:08] apptainer is not installed, using version from CVMFS
[2025-10-07 13:51:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 13:51:09] XeonFire
[2025-10-07 13:51:09] apptainer works
[2025-10-07 13:51:09] Set ATHENA_PROC_NUMBER=12
[2025-10-07 13:51:09] Set ATHENA_CORE_NUMBER=12
[2025-10-07 13:51:09] Starting ATLAS job with PandaID=6833166679
[2025-10-07 13:51:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 14:36:45]  *** The last 200 lines of the pilot log: ***
[2025-10-07 14:36:45]  scope=mc23_13p6TeV
[2025-10-07 14:36:45]  status=None
[2025-10-07 14:36:45]  status_code=0
[2025-10-07 14:36:45]  storage_token=
[2025-10-07 14:36:45]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6833166679/log.46376905._127263.job.log.tgz.1
[2025-10-07 14:36:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/4b/log.46376905._127263.job.log.tgz.1
[2025-10-07 14:36:45]  workdir=None
[2025-10-07 14:36:45] ]
[2025-10-07 14:36:45] 2025-10-07 19:35:55,266 | INFO     | transferring file log.46376905._127263.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6833166679/log.46376905._127263.job.log.tgz.1 to /var/lib/boinc
[2025-10-07 14:36:45] 2025-10-07 19:35:55,266 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6833166679/log.46376905._127263.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.463769
[2025-10-07 14:36:45] 2025-10-07 19:35:55,288 | INFO     | adding to output.list: log.46376905._127263.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/4b/log.46376905._127263.job.log.tg
[2025-10-07 14:36:45] 2025-10-07 19:35:55,289 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 14:36:45] 2025-10-07 19:35:55,289 | INFO     | summary of transferred files:
[2025-10-07 14:36:45] 2025-10-07 19:35:55,289 | INFO     |  -- lfn=log.46376905._127263.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 14:36:45] 2025-10-07 19:35:55,289 | INFO     | stage-out finished correctly
[2025-10-07 14:36:45] 2025-10-07 19:35:55,354 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 14:36:45] 2025-10-07 19:35:56,336 | INFO     | time since job start (2661s) is within the limit (172800.0s)
[2025-10-07 14:36:45] 2025-10-07 19:35:57,795 | WARNING  | process 3966009 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 14:36:45] 2025-10-07 19:35:57,795 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6833166679/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 14:36:45] 2025-10-07 19:35:57,954 | INFO     | job 6833166679 has state=finished
[2025-10-07 14:36:45] 2025-10-07 19:35:57,954 | INFO     | preparing for final server update for job 6833166679 in state='finished'
[2025-10-07 14:36:45] 2025-10-07 19:35:57,955 | INFO     | this job has now completed (state=finished)
[2025-10-07 14:36:45] 2025-10-07 19:35:57,955 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 14:36:45] 2025-10-07 19:35:57,956 | INFO     | log transfer has been attempted: DONE
[2025-10-07 14:36:45] 2025-10-07 19:35:57,956 | INFO     | job 6833166679 has finished - writing final server update
[2025-10-07 14:36:45] 2025-10-07 19:35:57,956 | INFO     | total number of processed events: 400 (read)
[2025-10-07 14:36:45] 2025-10-07 19:35:57,958 | INFO     | executing command: lscpu
[2025-10-07 14:36:45] 2025-10-07 19:35:58,007 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 14:36:45] 2025-10-07 19:35:58,043 | INFO     | number of running child processes to parent process 3966009: 1
[2025-10-07 14:36:45] 2025-10-07 19:35:58,043 | INFO     | maximum number of monitored processes: 6
[2025-10-07 14:36:45] 2025-10-07 19:35:58,337 | INFO     | time since job start (2663s) is within the limit (172800.0s)
[2025-10-07 14:36:45] 2025-10-07 19:36:00,342 | INFO     | time since job start (2665s) is within the limit (172800.0s)
[2025-10-07 14:36:45] 2025-10-07 19:36:00,546 | INFO     | monitor loop #199: job 0:6833166679 is in state 'finished'
[2025-10-07 14:36:45] 2025-10-07 19:36:00,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 14:36:45] 2025-10-07 19:36:01,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 14:36:45] 2025-10-07 19:36:01,340 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2053.9477840909094
[2025-10-07 14:36:45] 2025-10-07 19:36:01,358 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6833166679/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 14:36:45] 2025-10-07 19:36:01,358 | INFO     | extracted standard info from prmon json
[2025-10-07 14:36:45] 2025-10-07 19:36:01,359 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 14:36:45] 2025-10-07 19:36:01,359 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 14:36:45] 2025-10-07 19:36:01,359 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 14:36:45] 2025-10-07 19:36:01,359 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 14:36:45] 2025-10-07 19:36:01,361 | INFO     | fitting pss+swap vs Time
[2025-10-07 14:36:45] 2025-10-07 19:36:01,361 | INFO     | sum of square deviations: 15695178.0
[2025-10-07 14:36:45] 2025-10-07 19:36:01,362 | INFO     | sum of deviations: 875141990.0000002
[2025-10-07 14:36:45] 2025-10-07 19:36:01,362 | INFO     | mean x: 1759864525.0
[2025-10-07 14:36:45] 2025-10-07 19:36:01,362 | INFO     | mean y: 2667983.6756756757
[2025-10-07 14:36:45] 2025-10-07 19:36:01,362 | INFO     | -- intersect: -98125008079.56523
[2025-10-07 14:36:45] 2025-10-07 19:36:01,362 | INFO     | intersect: -98125008079.56523
[2025-10-07 14:36:45] 2025-10-07 19:36:01,362 | INFO     | chi2: 0.15256751640528854
[2025-10-07 14:36:45] 2025-10-07 19:36:01,363 | INFO     | -- intersect: -98125008079.56523
[2025-10-07 14:36:45] 2025-10-07 19:36:01,363 | INFO     | current memory leak: 55.76 B/s (using 37 data points, chi2=0.15)
[2025-10-07 14:36:45] 2025-10-07 19:36:01,363 | INFO     | could have reported an average CPU frequency of 2049 MHz (5 samples)
[2025-10-07 14:36:45] 2025-10-07 19:36:01,363 | INFO     | ..............................
[2025-10-07 14:36:45] 2025-10-07 19:36:01,363 | INFO     | . Timing measurements:
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | . get job = 0 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | . initial setup = 16 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | . payload setup = 6 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | . stage-in = 0 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | . payload execution = 2632 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | . stage-out = 0 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | . log creation = 0 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,364 | INFO     | ..............................
[2025-10-07 14:36:45] 2025-10-07 19:36:01,548 | INFO     | 
[2025-10-07 14:36:45] 2025-10-07 19:36:01,549 | INFO     | job summary report
[2025-10-07 14:36:45] 2025-10-07 19:36:01,549 | INFO     | --------------------------------------------------
[2025-10-07 14:36:45] 2025-10-07 19:36:01,549 | INFO     | PanDA job id: 6833166679
[2025-10-07 14:36:45] 2025-10-07 19:36:01,549 | INFO     | task id: 46376905
[2025-10-07 14:36:45] 2025-10-07 19:36:01,549 | INFO     | errors: (none)
[2025-10-07 14:36:45] 2025-10-07 19:36:01,549 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 14:36:45] 2025-10-07 19:36:01,549 | INFO     | pilot state: finished 
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | transexitcode: 0
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | exeerrorcode: 0
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | exeerrordiag: 
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | exitcode: 0
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | exitmsg: OK
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | cpuconsumptiontime: 25992 s
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | nevents: 400
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | neventsw: 0
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | pid: 3966009
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | pgrp: 3966009
[2025-10-07 14:36:45] 2025-10-07 19:36:01,550 | INFO     | corecount: 12
[2025-10-07 14:36:45] 2025-10-07 19:36:01,551 | INFO     | event service: False
[2025-10-07 14:36:45] 2025-10-07 19:36:01,551 | INFO     | sizes: {0: 2348654, 1: 2348853, 5: 2349115, 11: 2349171, 2641: 2374383, 2642: 2374382, 2643: 2383634, 2649: 2383804}
[2025-10-07 14:36:45] 2025-10-07 19:36:01,551 | INFO     | --------------------------------------------------
[2025-10-07 14:36:45] 2025-10-07 19:36:01,551 | INFO     | 
[2025-10-07 14:36:45] 2025-10-07 19:36:01,551 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-07 14:36:45] 2025-10-07 19:36:01,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,576 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,576 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 14:36:45] 2025-10-07 19:36:01,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,578 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 14:36:45] 2025-10-07 19:36:01,578 | INFO     | job 6833166679 has completed (purged errors)
[2025-10-07 14:36:45] 2025-10-07 19:36:01,578 | INFO     | overall cleanup function is called
[2025-10-07 14:36:45] 2025-10-07 19:36:02,587 | INFO     | --- collectZombieJob: --- 10, [3966009]
[2025-10-07 14:36:45] 2025-10-07 19:36:02,588 | INFO     | zombie collector waiting for pid 3966009
[2025-10-07 14:36:45] 2025-10-07 19:36:02,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 14:36:45] 2025-10-07 19:36:02,588 | INFO     | collected zombie processes
[2025-10-07 14:36:45] 2025-10-07 19:36:02,588 | INFO     | will attempt to kill all subprocesses of pid=3966009
[2025-10-07 14:36:45] 2025-10-07 19:36:02,902 | INFO     | process IDs to be killed: [3966009] (in reverse order)
[2025-10-07 14:36:45] 2025-10-07 19:36:02,995 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 14:36:45] 2025-10-07 19:36:02,996 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 14:36:45] 2025-10-07 19:36:03,007 | INFO     | did not find any defunct processes belonging to 3966009
[2025-10-07 14:36:45] 2025-10-07 19:36:03,017 | INFO     | did not find any defunct processes belonging to 3966009
[2025-10-07 14:36:45] 2025-10-07 19:36:03,018 | INFO     | ready for new job
[2025-10-07 14:36:45] 2025-10-07 19:36:03,018 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 14:36:45] 2025-10-07 19:36:03,020 | INFO     | ***************************************
[2025-10-07 14:36:45] 2025-10-07 19:36:03,020 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 14:36:45] 2025-10-07 19:36:03,020 | INFO     | ***************************************
[2025-10-07 14:36:45] 2025-10-07 19:36:03,020 | INFO     | 
[2025-10-07 14:36:45] 2025-10-07 19:36:03,026 | INFO     | architecture information:
[2025-10-07 14:36:45] 2025-10-07 19:36:03,026 | INFO     | executing command: cat /etc/os-release
[2025-10-07 14:36:45] 2025-10-07 19:36:03,042 | INFO     | cat /etc/os-release:
[2025-10-07 14:36:45] NAME="CentOS Linux"
[2025-10-07 14:36:45] VERSION="7 (Core)"
[2025-10-07 14:36:45] ID="centos"
[2025-10-07 14:36:45] ID_LIKE="rhel fedora"
[2025-10-07 14:36:45] VERSION_ID="7"
[2025-10-07 14:36:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 14:36:45] ANSI_COLOR="0;31"
[2025-10-07 14:36:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 14:36:45] HOME_URL="https://www.centos.org/"
[2025-10-07 14:36:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 14:36:45] 
[2025-10-07 14:36:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 14:36:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 14:36:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 14:36:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 14:36:45] 
[2025-10-07 14:36:45] 2025-10-07 19:36:03,043 | INFO     | ***************************************
[2025-10-07 14:36:45] 2025-10-07 19:36:03,545 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-07 14:36:45] 2025-10-07 19:36:03,562 | INFO     | sufficient remaining disk space (1815811719168 B)
[2025-10-07 14:36:45] 2025-10-07 19:36:03,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 14:36:45] 2025-10-07 19:36:03,563 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 14:36:45] 2025-10-07 19:36:03,563 | INFO     | update_server=False
[2025-10-07 14:36:45] 2025-10-07 19:36:03,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 14:36:45] 2025-10-07 19:36:03,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 14:36:45] 2025-10-07 19:36:03,611 | INFO     | all payload control threads have been joined
[2025-10-07 14:36:45] 2025-10-07 19:36:04,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 14:36:45] 2025-10-07 19:36:04,051 | INFO     | aborting loop
[2025-10-07 14:36:45] 2025-10-07 19:36:04,568 | INFO     | [job] retrieve thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:04,616 | INFO     | [payload] control thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:04,623 | INFO     | all data control threads have been joined
[2025-10-07 14:36:45] 2025-10-07 19:36:04,873 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:05,017 | INFO     | all job control threads have been joined
[2025-10-07 14:36:45] 2025-10-07 19:36:05,054 | INFO     | [job] job monitor thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:05,426 | INFO     | [payload] failed_post thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:05,566 | INFO     | [data] copytool_out thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:05,611 | INFO     | [job] validate thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:05,628 | INFO     | [data] control thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:05,893 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:05,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 14:36:45] 2025-10-07 19:36:06,021 | INFO     | [data] copytool_in thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:06,022 | INFO     | [job] control thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:06,033 | INFO     | [payload] validate_post thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:06,040 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:06,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 14:36:45] 2025-10-07 19:36:07,460 | INFO     | [job] queue monitor thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:09,965 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:13,885 | INFO     | job.realtimelogging is not enabled
[2025-10-07 14:36:45] 2025-10-07 19:36:14,891 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 14:36:45] 2025-10-07 19:36:19,175 [wrapper] supervise_pilot (15 min periods counter: 4)
[2025-10-07 14:36:45] 2025-10-07 19:36:33,791 | INFO     | PID=3958962 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 14:36:45] 2025-10-07 19:36:33,791 | INFO     | .. there are 4 such processes running
[2025-10-07 14:36:45] 2025-10-07 19:36:33,792 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 14:36:45] 2025-10-07 19:36:33,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 14:36:45] 2025-10-07 19:36:33,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 14:36:45] 2025-10-07 19:36:38,709 | INFO     | [monitor] cgroup control has ended
[2025-10-07 14:36:45] 2025-10-07 19:36:40,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125622112237376)>', '<ExcThread(monitor, started 125621703251712)>']
[2025-10-07 14:36:45] 2025-10-07 19:36:40,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 14:36:45] 2025-10-07 19:36:40,820 | INFO     | [monitor] control thread has ended
[2025-10-07 14:36:45] 2025-10-07 19:36:45,395 | INFO     | all workflow threads have been joined
[2025-10-07 14:36:45] 2025-10-07 19:36:45,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 14:36:45] 2025-10-07 19:36:45,396 | INFO     | traces error code: 0
[2025-10-07 14:36:45] 2025-10-07 19:36:45,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 14:36:45] 2025-10-07 19:36:45,498 [wrapper] ==== pilot stdout END ====
[2025-10-07 14:36:45] 2025-10-07 19:36:45,501 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 14:36:45] 2025-10-07 19:36:45,503 [wrapper] pilotpid: 3958962
[2025-10-07 14:36:45] 2025-10-07 19:36:45,505 [wrapper] Pilot exit status: 0
[2025-10-07 14:36:45] 2025-10-07 19:36:45,514 [wrapper] pandaids: 6833166679
[2025-10-07 14:36:45] 2025-10-07 19:36:45,561 [wrapper] cleanup supervisor_pilot 4056904 3958963
[2025-10-07 14:36:45] 2025-10-07 19:36:45,564 [wrapper] Test setup, not cleaning
[2025-10-07 14:36:45] 2025-10-07 19:36:45,566 [wrapper] apfmon messages muted
[2025-10-07 14:36:45] 2025-10-07 19:36:45,569 [wrapper] ==== wrapper stdout END ====
[2025-10-07 14:36:45] 2025-10-07 19:36:45,571 [wrapper] ==== wrapper stderr END ====
[2025-10-07 14:36:45]  *** Error codes and diagnostics ***
[2025-10-07 14:36:45]     "exeErrorCode": 0,
[2025-10-07 14:36:45]     "exeErrorDiag": "",
[2025-10-07 14:36:45]     "pilotErrorCode": 0,
[2025-10-07 14:36:45]     "pilotErrorDiag": "",
[2025-10-07 14:36:45]  *** Listing of results directory ***
[2025-10-07 14:36:45] total 393512
[2025-10-07 14:36:45] -rw-r--r-- 1 mark mark    552446 Oct  6 22:46 pilot3.tar.gz
[2025-10-07 14:36:45] -rwx------ 1 mark mark     36292 Oct  6 23:01 runpilot2-wrapper.sh
[2025-10-07 14:36:45] -rw-r--r-- 1 mark mark      5112 Oct  6 23:01 queuedata.json
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark       100 Oct  7 13:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 14:36:45] -rwxr-xr-x 1 mark mark      7986 Oct  7 13:51 run_atlas
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark       105 Oct  7 13:51 job.xml
[2025-10-07 14:36:45] -rw-r--r-- 2 mark mark 215750225 Oct  7 13:51 EVNT.46376901._004734.pool.root.1
[2025-10-07 14:36:45] -rw-r--r-- 2 mark mark     15120 Oct  7 13:51 start_atlas.sh
[2025-10-07 14:36:45] drwxrwx--x 2 mark mark      4096 Oct  7 13:51 shared
[2025-10-07 14:36:45] -rw-r--r-- 2 mark mark    565599 Oct  7 13:51 input.tar.gz
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark      9229 Oct  7 13:51 init_data.xml
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark         0 Oct  7 13:51 boinc_setup_complete
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark         0 Oct  7 13:51 boinc_lockfile
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark      2520 Oct  7 13:51 pandaJob.out
[2025-10-07 14:36:45] -rw------- 1 mark mark    977512 Oct  7 13:51 agis_schedconf.cvmfs.json
[2025-10-07 14:36:45] -rw------- 1 mark mark   1560401 Oct  7 13:51 agis_ddmendpoints.agis.ALL.json
[2025-10-07 14:36:45] drwx------ 4 mark mark      4096 Oct  7 13:51 pilot3
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark       529 Oct  7 14:35 boinc_task_state.xml
[2025-10-07 14:36:45] -rw------- 1 mark mark 181792274 Oct  7 14:35 HITS.46376905._127263.pool.root.1
[2025-10-07 14:36:45] -rw------- 1 mark mark      1030 Oct  7 14:35 memory_monitor_summary.json
[2025-10-07 14:36:45] -rw------- 1 mark mark    345246 Oct  7 14:35 log.46376905._127263.job.log.tgz.1
[2025-10-07 14:36:45] -rw------- 1 mark mark      7784 Oct  7 14:36 heartbeat.json
[2025-10-07 14:36:45] -rw------- 1 mark mark        95 Oct  7 14:36 pilot_heartbeat.json
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark        27 Oct  7 14:36 wrapper_checkpoint.txt
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark      8192 Oct  7 14:36 boinc_mmap_file
[2025-10-07 14:36:45] -rw------- 1 mark mark      4904 Oct  7 14:36 pilotlog.txt
[2025-10-07 14:36:45] -rw------- 1 mark mark    415002 Oct  7 14:36 log.46376905._127263.job.log.1
[2025-10-07 14:36:45] -rw------- 1 mark mark       357 Oct  7 14:36 output.list
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark       620 Oct  7 14:36 runtime_log
[2025-10-07 14:36:45] -rw------- 1 mark mark    778240 Oct  7 14:36 result.tar.gz
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark      8759 Oct  7 14:36 runtime_log.err
[2025-10-07 14:36:45] -rw------- 1 mark mark       643 Oct  7 14:36 dOxKDml4DQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVyVNDmpyqm4n.diag
[2025-10-07 14:36:45] -rw-rw-r-- 1 mark mark     22029 Oct  7 14:36 stderr.txt
[2025-10-07 14:36:45] HITS file was successfully produced:
[2025-10-07 14:36:45] -rw------- 1 mark mark 181792274 Oct  7 14:35 shared/HITS.pool.root.1
[2025-10-07 14:36:45]  *** Contents of shared directory: ***
[2025-10-07 14:36:45] total 389568
[2025-10-07 14:36:45] -rw-r--r-- 2 mark mark 215750225 Oct  7 13:51 ATLAS.root_0
[2025-10-07 14:36:45] -rw-r--r-- 2 mark mark     15120 Oct  7 13:51 start_atlas.sh
[2025-10-07 14:36:45] -rw-r--r-- 2 mark mark    565599 Oct  7 13:51 input.tar.gz
[2025-10-07 14:36:45] -rw------- 1 mark mark 181792274 Oct  7 14:35 HITS.pool.root.1
[2025-10-07 14:36:45] -rw------- 1 mark mark    778240 Oct  7 14:36 result.tar.gz
14:36:46 (3954908): run_atlas exited; CPU time 26081.166986
14:36:46 (3954908): called boinc_finish(0)

</stderr_txt>
]]>

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