Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-07 12:06:12 (6020): vboxwrapper version 26210
2025-10-07 12:06:12 (6020): BOINC client version: 8.2.4
2025-10-07 12:06:13 (6020): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-07 12:06:14 (6020): Successfully copied 'init_data.xml' to the shared directory.
2025-10-07 12:06:14 (6020): Create VM. (boinc_729614e5dba4d464, slot#13)
2025-10-07 12:06:15 (6020): Setting Memory Size for VM. (4700MB)
2025-10-07 12:06:15 (6020): Setting CPU Count for VM. (7)
2025-10-07 12:06:15 (6020): Setting Chipset Options for VM.
2025-10-07 12:06:15 (6020): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-07 12:06:16 (6020): Setting Boot Options for VM.
2025-10-07 12:06:16 (6020): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-07 12:06:17 (6020): Enabling VM Network Access.
2025-10-07 12:06:17 (6020): Disabling USB Support for VM.
2025-10-07 12:06:17 (6020): Disabling COM Port Support for VM.
2025-10-07 12:06:17 (6020): Disabling LPT Port Support for VM.
2025-10-07 12:06:18 (6020): Disabling Audio Support for VM.
2025-10-07 12:06:18 (6020): Disabling Clipboard Support for VM.
2025-10-07 12:06:18 (6020): Disabling Drag and Drop Support for VM.
2025-10-07 12:06:18 (6020): Adding storage controller(s) to VM.
2025-10-07 12:06:19 (6020): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-07 12:06:21 (6020): Adding VirtualBox Guest Additions to VM.
2025-10-07 12:06:21 (6020): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-07 12:06:21 (6020): forwarding host port 58173 to guest port 80
2025-10-07 12:06:22 (6020): Enabling remote desktop for VM.
2025-10-07 12:06:22 (6020): Required extension pack not installed, remote desktop not enabled.
2025-10-07 12:06:22 (6020): Enabling shared directory for VM.
2025-10-07 12:06:22 (6020): Starting VM using VBoxManage interface. (boinc_729614e5dba4d464, slot#13)
2025-10-07 12:06:31 (6020): Successfully started VM. (PID = '16512')
2025-10-07 12:06:31 (6020): Reporting VM Process ID to BOINC.
2025-10-07 12:06:31 (6020): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-07 12:06:31 (6020): Guest Log: CPUID EDX: 0x178bfbff
2025-10-07 12:06:31 (6020): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-07 12:06:31 (6020): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-07 12:06:31 (6020): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-07 12:06:31 (6020): Detected: Web Application Enabled (http://localhost:58173)
2025-10-07 12:06:31 (6020): Preference change detected
2025-10-07 12:06:31 (6020): Setting CPU throttle for VM. (75%)
2025-10-07 12:06:31 (6020): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-07 12:06:33 (6020): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-07 12:06:33 (6020): Guest Log: BIOS: Booting from Hard Disk...
2025-10-07 12:06:36 (6020): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-07 12:06:36 (6020): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-07 12:06:36 (6020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-07 12:06:47 (6020): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-07 12:06:47 (6020): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-07 12:06:59 (6020): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.000295 main     Log opened 2025-10-07T12:06:57.694690000Z
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.000473 main     OS Product: Linux
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.000534 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.000582 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.000628 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.000629 main     Process ID: 1357
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.000630 main     Package type: LINUX_64BITS_GENERIC
2025-10-07 12:06:59 (6020): Guest Log: 00:00:00.002771 main     5.2.32 r132073 started. Verbose level = 0
2025-10-07 12:06:59 (6020): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-07 12:06:59 (6020): Guest Log: [INFO] Mounting shared directory
2025-10-07 12:06:59 (6020): Guest Log: [INFO] Checking for init_data.xml
2025-10-07 12:07:03 (6020): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-07 12:07:03 (6020): Guest Log: [INFO] Detected branch: prod
2025-10-07 12:07:03 (6020): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-07 12:07:03 (6020): Guest Log: Copying input files
2025-10-07 12:07:08 (6020): Guest Log: Copied input files into RunAtlas.
2025-10-07 12:07:08 (6020): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-07 12:07:08 (6020): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-07 12:07:08 (6020): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-07 12:07:08 (6020): Guest Log: Further information can be found at the LHC@home message board.
2025-10-07 12:07:09 (6020): Guest Log: 00:00:10.053535 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 615 230 000ns (GuestNow=1 759 831 629 084 835 000 ns GuestLast=1 759 838 817 700 065 000 ns fSetTimeLastLoop=true )
2025-10-07 12:07:17 (6020): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-07 12:07:18 (6020): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-07 12:07:18 (6020): Guest Log: 2.6.3.0 1635 0 32208 151432 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-07 12:07:19 (6020): Guest Log: copied the webapp to /var/www
2025-10-07 12:07:19 (6020): Guest Log: ATHENA_PROC_NUMBER=7
2025-10-07 12:07:19 (6020): Guest Log: ATHENA_CORE_NUMBER=7
2025-10-07 12:07:20 (6020): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-07 12:07:20 (6020): Guest Log:  *** Starting ATLAS job. (PandaID=6833160654 taskID=46376905) ***
2025-10-07 13:46:37 (6020): Status Report: Elapsed Time: '6000.000000'
2025-10-07 13:46:37 (6020): Status Report: CPU Time: '28259.484375'
2025-10-07 14:04:59 (6020): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 14:05:22 (6020): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 15:06:13 (6020): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 15:31:37 (6020): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 15:52:36 (6020): Status Report: Elapsed Time: '12000.000000'
2025-10-07 15:52:36 (6020): Status Report: CPU Time: '59561.453125'
2025-10-07 16:32:10 (6020): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 16:36:13 (6020): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 17:36:46 (6020): Status Report: Elapsed Time: '18000.000000'
2025-10-07 17:36:46 (6020): Status Report: CPU Time: '90908.171875'
2025-10-07 18:22:25 (6020): Guest Log:  *** Job finished ***
2025-10-07 18:22:25 (6020): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:17:57,566 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:17:57,566 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:17,753 | INFO     | [monitor] cgroup control has ended
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:18,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140428377311040)>', '<ExcThread(monitor, started 140427629942528)>']
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:19,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:19,633 | INFO     | [monitor] control thread has ended
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:23,765 | INFO     | all workflow threads have been joined
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:23,766 | INFO     | end of generic workflow (traces error code: 0)
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:23,766 | INFO     | traces error code: 0
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:23,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:23,987 [wrapper] ==== pilot stdout END ====
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:23,996 [wrapper] ==== wrapper stdout RESUME ====
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,005 [wrapper] pilotpid: 6051
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,016 [wrapper] Pilot exit status: 0
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,626 [wrapper] pandaids: 6833160654
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,685 [wrapper] cleanup supervisor_pilot 19619 6052
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,705 [wrapper] Test setup, not cleaning
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,715 [wrapper] apfmon messages muted
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,731 [wrapper] ==== wrapper stdout END ====
2025-10-07 18:22:25 (6020): Guest Log: 2025-10-07 16:18:24,746 [wrapper] ==== wrapper stderr END ====
2025-10-07 18:22:25 (6020): Guest Log:  *** Error codes and diagnostics ***
2025-10-07 18:22:25 (6020): Guest Log:     "exeErrorCode": 0,
2025-10-07 18:22:25 (6020): Guest Log:     "exeErrorDiag": "",
2025-10-07 18:22:25 (6020): Guest Log:     "pilotErrorCode": 0,
2025-10-07 18:22:25 (6020): Guest Log:     "pilotErrorDiag": "",
2025-10-07 18:22:25 (6020): Guest Log:  *** Listing of results directory ***
2025-10-07 18:22:25 (6020): Guest Log: total 183584
2025-10-07 18:22:25 (6020): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  7 01:08 pilot3.tar.gz
2025-10-07 18:22:25 (6020): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  7 01:19 runpilot2-wrapper.sh
2025-10-07 18:22:25 (6020): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  7 01:19 queuedata.json
2025-10-07 18:22:25 (6020): Guest Log: -rwxr-xr-x. 1 atlas atlas     10996 Oct  7 10:07 init_data.xml
2025-10-07 18:22:25 (6020): Guest Log: -rwxr-xr-x. 1 atlas atlas    565605 Oct  7 10:07 input.tar.gz
2025-10-07 18:22:25 (6020): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  7 10:07 start_atlas.sh
2025-10-07 18:22:25 (6020): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  7 10:07 EVNT.46376901._004631.pool.root.1 -> /data/./ATLAS.root_0
2025-10-07 18:22:25 (6020): Guest Log: -rw-r--r--. 1 atlas atlas      2521 Oct  7 10:07 pandaJob.out
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas    974994 Oct  7 10:08 agis_schedconf.cvmfs.json
2025-10-07 18:22:25 (6020): Guest Log: drwx------. 4 atlas atlas      4096 Oct  7 10:08 pilot3
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas 178202253 Oct  7 16:16 HITS.46376905._124719.pool.root.1
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas      1032 Oct  7 16:16 memory_monitor_summary.json
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  7 16:17 agis_ddmendpoints.agis.ALL.json
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas    517816 Oct  7 16:17 log.46376905._124719.job.log.tgz.1
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas      7830 Oct  7 16:17 heartbeat.json
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas        97 Oct  7 16:17 pilot_heartbeat.json
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  7 16:18 pilotlog.txt
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas   2467597 Oct  7 16:18 log.46376905._124719.job.log.1
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas       357 Oct  7 16:18 output.list
2025-10-07 18:22:25 (6020): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  7 16:18 runtime_log
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas   3000320 Oct  7 16:18 result.tar.gz
2025-10-07 18:22:25 (6020): Guest Log: -rw-r--r--. 1 atlas atlas      8655 Oct  7 16:18 runtime_log.err
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas       665 Oct  7 16:18 8ZnKDmXXBQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHdKMDmkE9nem.diag
2025-10-07 18:22:25 (6020): Guest Log: Looking for outputfile HITS.46376905._124719.pool.root.1
2025-10-07 18:22:25 (6020): Guest Log: HITS file was successfully produced
2025-10-07 18:22:25 (6020): Guest Log: -rw-------. 1 atlas atlas 178202253 Oct  7 16:16 /home/atlas/RunAtlas/HITS.46376905._124719.pool.root.1
2025-10-07 18:22:27 (6020): Guest Log: Successfully finished the ATLAS job!
2025-10-07 18:22:27 (6020): Guest Log: Copying the results back to the shared directory!
2025-10-07 18:22:27 (6020): Guest Log:  *** Contents of shared directory: ***
2025-10-07 18:22:27 (6020): Guest Log: total 389428
2025-10-07 18:22:27 (6020): Guest Log: -rwxrwxrwx. 1 root root 216969121 Oct  7 10:06 ATLAS.root_0
2025-10-07 18:22:27 (6020): Guest Log: -rwxrwxrwx. 1 root root 178202253 Oct  7  2025 HITS.pool.root.1
2025-10-07 18:22:27 (6020): Guest Log: -rwxrwxrwx. 1 root root     10996 Oct  7 10:06 init_data.xml
2025-10-07 18:22:27 (6020): Guest Log: -rwxrwxrwx. 1 root root    565605 Oct  7 10:00 input.tar.gz
2025-10-07 18:22:27 (6020): Guest Log: -rwxrwxrwx. 1 root root   3000320 Oct  7  2025 result.tar.gz
2025-10-07 18:22:27 (6020): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  7 10:00 start_atlas.sh
2025-10-07 18:22:27 (6020): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-07 18:22:27 (6020): VM Completion File Detected.
2025-10-07 18:22:27 (6020): Powering off VM.
2025-10-07 18:22:29 (6020): Successfully stopped VM.
2025-10-07 18:22:29 (6020): Deregistering VM. (boinc_729614e5dba4d464, slot#13)
2025-10-07 18:22:29 (6020): Removing network bandwidth throttle group from VM.
2025-10-07 18:22:29 (6020): Removing VM from VirtualBox.
2025-10-07 18:22:34 (6020): called boinc_finish(0)

</stderr_txt>
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