Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-08 10:54:39 (13072): vboxwrapper version 26210
2025-10-08 10:54:39 (13072): BOINC client version: 8.2.4
2025-10-08 10:54:40 (13072): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-08 10:54:40 (13072): Successfully copied 'init_data.xml' to the shared directory.
2025-10-08 10:54:40 (13072): Create VM. (boinc_34f3127febef4284, slot#2)
2025-10-08 10:54:41 (13072): Setting Memory Size for VM. (4400MB)
2025-10-08 10:54:41 (13072): Setting CPU Count for VM. (4)
2025-10-08 10:54:41 (13072): Setting Chipset Options for VM.
2025-10-08 10:54:42 (13072): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-08 10:54:42 (13072): Setting Boot Options for VM.
2025-10-08 10:54:42 (13072): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-08 10:54:43 (13072): Enabling VM Network Access.
2025-10-08 10:54:43 (13072): Disabling USB Support for VM.
2025-10-08 10:54:43 (13072): Disabling COM Port Support for VM.
2025-10-08 10:54:43 (13072): Disabling LPT Port Support for VM.
2025-10-08 10:54:44 (13072): Disabling Audio Support for VM.
2025-10-08 10:54:44 (13072): Disabling Clipboard Support for VM.
2025-10-08 10:54:44 (13072): Disabling Drag and Drop Support for VM.
2025-10-08 10:54:44 (13072): Adding storage controller(s) to VM.
2025-10-08 10:54:45 (13072): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-08 10:54:47 (13072): Adding VirtualBox Guest Additions to VM.
2025-10-08 10:54:47 (13072): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-08 10:54:47 (13072): forwarding host port 64917 to guest port 80
2025-10-08 10:54:48 (13072): Enabling remote desktop for VM.
2025-10-08 10:54:48 (13072): Enabling shared directory for VM.
2025-10-08 10:54:49 (13072): Starting VM using VBoxManage interface. (boinc_34f3127febef4284, slot#2)
2025-10-08 10:54:58 (13072): Successfully started VM. (PID = '8280')
2025-10-08 10:54:58 (13072): Reporting VM Process ID to BOINC.
2025-10-08 10:54:58 (13072): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-08 10:54:58 (13072): Guest Log: CPUID EDX: 0x178bfbff
2025-10-08 10:54:58 (13072): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-08 10:54:58 (13072): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-08 10:54:58 (13072): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-08 10:54:58 (13072): Detected: Web Application Enabled (http://localhost:64917)
2025-10-08 10:54:58 (13072): Detected: Remote Desktop Enabled (localhost:64918)
2025-10-08 10:54:58 (13072): Preference change detected
2025-10-08 10:54:58 (13072): Setting CPU throttle for VM. (100%)
2025-10-08 10:54:58 (13072): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-08 10:55:00 (13072): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-08 10:55:00 (13072): Guest Log: BIOS: Booting from Hard Disk...
2025-10-08 10:55:03 (13072): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-08 10:55:03 (13072): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-08 10:55:03 (13072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-08 10:55:12 (13072): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-08 10:55:12 (13072): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-08 10:55:27 (13072): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.000174 main     Log opened 2025-10-08T10:55:25.860579000Z
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.000302 main     OS Product: Linux
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.000344 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.000375 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.000406 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.000407 main     Process ID: 1312
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.000407 main     Package type: LINUX_64BITS_GENERIC
2025-10-08 10:55:27 (13072): Guest Log: 00:00:00.001386 main     5.2.32 r132073 started. Verbose level = 0
2025-10-08 10:55:27 (13072): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-08 10:55:27 (13072): Guest Log: [INFO] Mounting shared directory
2025-10-08 10:55:27 (13072): Guest Log: [INFO] Checking for init_data.xml
2025-10-08 10:55:32 (13072): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-08 10:55:32 (13072): Guest Log: [INFO] Detected branch: prod
2025-10-08 10:55:32 (13072): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-08 10:55:32 (13072): Guest Log: Copying input files
2025-10-08 10:55:34 (13072): Guest Log: Copied input files into RunAtlas.
2025-10-08 10:55:34 (13072): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-08 10:55:34 (13072): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-08 10:55:34 (13072): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-08 10:55:34 (13072): Guest Log: Further information can be found at the LHC@home message board.
2025-10-08 10:55:37 (13072): Guest Log: 00:00:10.006108 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 228 170 000ns (GuestNow=1 759 913 736 636 638 000 ns GuestLast=1 759 920 925 864 808 000 ns fSetTimeLastLoop=true )
2025-10-08 10:55:43 (13072): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-08 10:55:43 (13072): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-08 10:55:43 (13072): Guest Log: 2.6.3.0 1587 0 30052 151465 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-08 10:55:46 (13072): Guest Log: copied the webapp to /var/www
2025-10-08 10:55:46 (13072): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-08 10:55:46 (13072): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-08 10:55:46 (13072): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-08 10:55:46 (13072): Guest Log:  *** Starting ATLAS job. (PandaID=6833166847 taskID=46376905) ***
2025-10-08 11:54:38 (13072): VM state change detected. (old = 'running', new = 'paused')
2025-10-08 13:25:17 (13072): Guest Log: 00:59:11.004924 timesync vgsvcTimeSyncWorker: Radical host time change: 5 449 420 000 000ns (HostNow=1 759 922 717 027 000 000 ns HostLast=1 759 917 267 607 000 000 ns)
2025-10-08 13:25:17 (13072): VM state change detected. (old = 'paused', new = 'running')
2025-10-08 13:25:27 (13072): Guest Log: 00:59:21.009806 timesync vgsvcTimeSyncWorker: Radical guest time change: 5 449 396 940 000ns (GuestNow=1 759 922 727 031 909 000 ns GuestLast=1 759 917 277 634 969 000 ns fSetTimeLastLoop=true )
2025-10-08 14:05:45 (13072): Status Report: Elapsed Time: '6000.000000'
2025-10-08 14:05:45 (13072): Status Report: CPU Time: '22260.796875'
2025-10-08 14:25:59 (13072): VM state change detected. (old = 'running', new = 'paused')
2025-10-08 14:53:11 (13072): VM state change detected. (old = 'paused', new = 'running')
2025-10-08 15:50:01 (13072): Guest Log:  *** Job finished ***
2025-10-08 15:50:01 (13072): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:32,462 | INFO     | job.realtimelogging is not enabled
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:33,465 | INFO     | [payload] run_realtimelog thread has finished
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:53,930 | INFO     | [monitor] cgroup control has ended
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:54,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501618755392)>', '<ExcThread(monitor, started 140500585670400)>']
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:55,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:55,568 | INFO     | [monitor] control thread has ended
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,740 | INFO     | all workflow threads have been joined
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,741 | INFO     | end of generic workflow (traces error code: 0)
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,741 | INFO     | traces error code: 0
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,870 [wrapper] ==== pilot stdout END ====
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,876 [wrapper] ==== wrapper stdout RESUME ====
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,882 [wrapper] pilotpid: 5984
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:49:59,888 [wrapper] Pilot exit status: 0
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:50:00,107 [wrapper] pandaids: 6833166847
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:50:00,141 [wrapper] cleanup supervisor_pilot 10043 5985
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:50:00,147 [wrapper] Test setup, not cleaning
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:50:00,153 [wrapper] apfmon messages muted
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:50:00,160 [wrapper] ==== wrapper stdout END ====
2025-10-08 15:50:01 (13072): Guest Log: 2025-10-08 13:50:00,166 [wrapper] ==== wrapper stderr END ====
2025-10-08 15:50:01 (13072): Guest Log:  *** Error codes and diagnostics ***
2025-10-08 15:50:01 (13072): Guest Log:     "exeErrorCode": 0,
2025-10-08 15:50:01 (13072): Guest Log:     "exeErrorDiag": "",
2025-10-08 15:50:01 (13072): Guest Log:     "pilotErrorCode": 0,
2025-10-08 15:50:01 (13072): Guest Log:     "pilotErrorDiag": "",
2025-10-08 15:50:01 (13072): Guest Log:  *** Listing of results directory ***
2025-10-08 15:50:01 (13072): Guest Log: total 187000
2025-10-08 15:50:01 (13072): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  7 03:46 pilot3.tar.gz
2025-10-08 15:50:01 (13072): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  7 04:10 queuedata.json
2025-10-08 15:50:01 (13072): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  7 04:10 runpilot2-wrapper.sh
2025-10-08 15:50:01 (13072): Guest Log: -rwxr-xr-x. 1 atlas atlas      9397 Oct  8 08:55 init_data.xml
2025-10-08 15:50:01 (13072): Guest Log: -rwxr-xr-x. 1 atlas atlas    565602 Oct  8 08:55 input.tar.gz
2025-10-08 15:50:01 (13072): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  8 08:55 start_atlas.sh
2025-10-08 15:50:01 (13072): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  8 08:55 EVNT.46376901._004731.pool.root.1 -> /data/./ATLAS.root_0
2025-10-08 15:50:01 (13072): Guest Log: -rw-r--r--. 1 atlas atlas      2521 Oct  8 08:55 pandaJob.out
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas    979817 Oct  8 08:56 agis_schedconf.cvmfs.json
2025-10-08 15:50:01 (13072): Guest Log: drwx------. 4 atlas atlas      4096 Oct  8 08:56 pilot3
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas 184164681 Oct  8 13:48 HITS.46376905._127431.pool.root.1
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas        97 Oct  8 13:48 pilot_heartbeat.json
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas      1029 Oct  8 13:49 memory_monitor_summary.json
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  8 13:49 agis_ddmendpoints.agis.ALL.json
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas    352058 Oct  8 13:49 log.46376905._127431.job.log.tgz.1
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas      7796 Oct  8 13:49 heartbeat.json
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas      4870 Oct  8 13:49 pilotlog.txt
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas   1395385 Oct  8 13:50 log.46376905._127431.job.log.1
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas       357 Oct  8 13:50 output.list
2025-10-08 15:50:01 (13072): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  8 13:50 runtime_log
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas   1771520 Oct  8 13:50 result.tar.gz
2025-10-08 15:50:01 (13072): Guest Log: -rw-r--r--. 1 atlas atlas      8654 Oct  8 13:50 runtime_log.err
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas       666 Oct  8 13:50 c3MODmjCEQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJuKMDmuXcj6n.diag
2025-10-08 15:50:01 (13072): Guest Log: Looking for outputfile HITS.46376905._127431.pool.root.1
2025-10-08 15:50:01 (13072): Guest Log: HITS file was successfully produced
2025-10-08 15:50:01 (13072): Guest Log: -rw-------. 1 atlas atlas 184164681 Oct  8 13:48 /home/atlas/RunAtlas/HITS.46376905._127431.pool.root.1
2025-10-08 15:50:02 (13072): Guest Log: Successfully finished the ATLAS job!
2025-10-08 15:50:02 (13072): Guest Log: Copying the results back to the shared directory!
2025-10-08 15:50:02 (13072): Guest Log:  *** Contents of shared directory: ***
2025-10-08 15:50:03 (13072): Guest Log: total 392828
2025-10-08 15:50:03 (13072): Guest Log: -rwxrwxrwx. 1 root root 215713306 Oct  8 08:54 ATLAS.root_0
2025-10-08 15:50:03 (13072): Guest Log: -rwxrwxrwx. 1 root root 184164681 Oct  8 13:50 HITS.pool.root.1
2025-10-08 15:50:03 (13072): Guest Log: -rwxrwxrwx. 1 root root      9397 Oct  8 08:54 init_data.xml
2025-10-08 15:50:03 (13072): Guest Log: -rwxrwxrwx. 1 root root    565602 Oct  7 09:10 input.tar.gz
2025-10-08 15:50:03 (13072): Guest Log: -rwxrwxrwx. 1 root root   1771520 Oct  8 13:50 result.tar.gz
2025-10-08 15:50:03 (13072): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  7 09:10 start_atlas.sh
2025-10-08 15:50:03 (13072): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-08 15:50:03 (13072): VM Completion File Detected.
2025-10-08 15:50:03 (13072): Powering off VM.
2025-10-08 15:50:05 (13072): Successfully stopped VM.
2025-10-08 15:50:05 (13072): Deregistering VM. (boinc_34f3127febef4284, slot#2)
2025-10-08 15:50:05 (13072): Removing network bandwidth throttle group from VM.
2025-10-08 15:50:05 (13072): Removing VM from VirtualBox.
2025-10-08 15:50:10 (13072): called boinc_finish(0)

</stderr_txt>
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