Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
13:58:50 (1010379): wrapper (7.7.26015): starting
13:58:50 (1010379): wrapper: running run_atlas (--nthreads 2)
[2025-10-07 13:58:50] Arguments: --nthreads 2
[2025-10-07 13:58:50] Threads: 2
[2025-10-07 13:58:50] Checking for CVMFS
[2025-10-07 13:58:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 13:58:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 13:58:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 13:58:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 13:58:51] 2.11.0.0 3910605 9849 63216 151434 0 57 5027591 6144001 0 130560 0 21567865 99.997 322387 487 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-07 13:58:51] CVMFS is ok
[2025-10-07 13:58:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 13:58:51] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-07 13:58:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-07 13:58:51] Further information can be found at the LHC@home message board.
[2025-10-07 13:58:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 13:58:51] Checking for apptainer binary...
[2025-10-07 13:58:51] apptainer is not installed, using version from CVMFS
[2025-10-07 13:58:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 13:58:51] mordor
[2025-10-07 13:58:51] apptainer works
[2025-10-07 13:58:51] Set ATHENA_PROC_NUMBER=2
[2025-10-07 13:58:51] Set ATHENA_CORE_NUMBER=2
[2025-10-07 13:58:51] Starting ATLAS job with PandaID=6831276412
[2025-10-07 13:58:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 18:46:33]  *** The last 200 lines of the pilot log: ***
[2025-10-07 18:46:33] 2025-10-07 16:45:58,572 | INFO     | time since job start (17220s) is within the limit (172800.0s)
[2025-10-07 18:46:33] 2025-10-07 16:45:59,272 | INFO     | monitor loop #1252: job 0:6831276412 is in state 'finished'
[2025-10-07 18:46:33] 2025-10-07 16:45:59,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,090 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-07 18:46:33] 2025-10-07 16:46:00,091 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 2803.1025
[2025-10-07 18:46:33] 2025-10-07 16:46:00,091 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6831276412/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,092 | INFO     | extracted standard info from prmon json
[2025-10-07 18:46:33] 2025-10-07 16:46:00,092 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 18:46:33] 2025-10-07 16:46:00,092 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 18:46:33] 2025-10-07 16:46:00,092 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 18:46:33] 2025-10-07 16:46:00,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 18:46:33] 2025-10-07 16:46:00,097 | INFO     | fitting pss+swap vs Time
[2025-10-07 18:46:33] 2025-10-07 16:46:00,097 | INFO     | sum of square deviations: 6953769450.5
[2025-10-07 18:46:33] 2025-10-07 16:46:00,099 | INFO     | sum of deviations: -214764637969.99997
[2025-10-07 18:46:33] 2025-10-07 16:46:00,099 | INFO     | mean x: 1759846930.5
[2025-10-07 18:46:33] 2025-10-07 16:46:00,099 | INFO     | mean y: 2424501.3333333335
[2025-10-07 18:46:33] 2025-10-07 16:46:00,099 | INFO     | -- intersect: 54354656280.35387
[2025-10-07 18:46:33] 2025-10-07 16:46:00,100 | INFO     | intersect: 54354656280.35387
[2025-10-07 18:46:33] 2025-10-07 16:46:00,100 | INFO     | chi2: 1.7643959692651099
[2025-10-07 18:46:33] 2025-10-07 16:46:00,100 | INFO     | sum of square deviations: 6590404498.0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,102 | INFO     | sum of deviations: -208019210694.99997
[2025-10-07 18:46:33] 2025-10-07 16:46:00,102 | INFO     | mean x: 1759846778.0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,102 | INFO     | mean y: 2427332.5992779783
[2025-10-07 18:46:33] 2025-10-07 16:46:00,102 | INFO     | -- intersect: 55550146416.42703
[2025-10-07 18:46:33] 2025-10-07 16:46:00,102 | INFO     | intersect: 55550146416.42703
[2025-10-07 18:46:33] 2025-10-07 16:46:00,102 | INFO     | chi2: 1.7498602598841617
[2025-10-07 18:46:33] 2025-10-07 16:46:00,102 | INFO     | current chi2=1.7498602598841617 (change=0.8238348780065765 %)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,103 | INFO     | right removable region: 276
[2025-10-07 18:46:33] 2025-10-07 16:46:00,103 | INFO     | sum of square deviations: 6590404498.0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,104 | INFO     | sum of deviations: -238759775053.00003
[2025-10-07 18:46:33] 2025-10-07 16:46:00,105 | INFO     | mean x: 1759847083.0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,105 | INFO     | mean y: 2434418.0758122746
[2025-10-07 18:46:33] 2025-10-07 16:46:00,105 | INFO     | -- intersect: 63758869063.66868
[2025-10-07 18:46:33] 2025-10-07 16:46:00,105 | INFO     | intersect: 63758869063.66868
[2025-10-07 18:46:33] 2025-10-07 16:46:00,105 | INFO     | chi2: 0.6082466322676562
[2025-10-07 18:46:33] 2025-10-07 16:46:00,105 | INFO     | current chi2=0.6082466322676562 (change=65.52663671517014 %)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,105 | INFO     | sum of square deviations: 6239923508.0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,107 | INFO     | sum of deviations: -229514736016.00003
[2025-10-07 18:46:33] 2025-10-07 16:46:00,107 | INFO     | mean x: 1759847235.5
[2025-10-07 18:46:33] 2025-10-07 16:46:00,107 | INFO     | mean y: 2430394.492647059
[2025-10-07 18:46:33] 2025-10-07 16:46:00,107 | INFO     | -- intersect: 64732530557.80862
[2025-10-07 18:46:33] 2025-10-07 16:46:00,107 | INFO     | intersect: 64732530557.80862
[2025-10-07 18:46:33] 2025-10-07 16:46:00,108 | INFO     | chi2: 0.6042166905839051
[2025-10-07 18:46:33] 2025-10-07 16:46:00,108 | INFO     | current chi2=0.6042166905839051 (change=0.6625505954265077 %)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,108 | INFO     | left removable region: 20
[2025-10-07 18:46:33] 2025-10-07 16:46:00,108 | INFO     | sum of square deviations: 5202255680.0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | sum of deviations: -201869090655.0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | mean x: 1759847357.5
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | mean y: 2424652.875
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | -- intersect: 68291799032.51519
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | intersect: 68291799032.51519
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | chi2: 0.578994757733646
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | -- intersect: 68291799032.51519
[2025-10-07 18:46:33] 2025-10-07 16:46:00,110 | INFO     | current memory leak: -38.80 B/s (using 256 data points, chi2=0.58)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | could have reported an average CPU frequency of 2978 MHz (13 samples)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | ..............................
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . Timing measurements:
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . get job = 0 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . initial setup = 1 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . payload setup = 3 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . stage-in = 0 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . payload execution = 17186 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . stage-out = 1 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,111 | INFO     | . log creation = 0 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,112 | INFO     | ..............................
[2025-10-07 18:46:33] 2025-10-07 16:46:00,178 | INFO     | 
[2025-10-07 18:46:33] 2025-10-07 16:46:00,179 | INFO     | job summary report
[2025-10-07 18:46:33] 2025-10-07 16:46:00,179 | INFO     | --------------------------------------------------
[2025-10-07 18:46:33] 2025-10-07 16:46:00,179 | INFO     | PanDA job id: 6831276412
[2025-10-07 18:46:33] 2025-10-07 16:46:00,179 | INFO     | task id: 46376905
[2025-10-07 18:46:33] 2025-10-07 16:46:00,179 | INFO     | errors: (none)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 18:46:33] 2025-10-07 16:46:00,179 | INFO     | pilot state: finished 
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | transexitcode: 0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | exeerrorcode: 0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | exeerrordiag: 
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | exitcode: 0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | exitmsg: OK
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | cpuconsumptiontime: 33578 s
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | nevents: 400
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | neventsw: 0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,180 | INFO     | pid: 1020353
[2025-10-07 18:46:33] 2025-10-07 16:46:00,181 | INFO     | pgrp: 1020353
[2025-10-07 18:46:33] 2025-10-07 16:46:00,181 | INFO     | corecount: 2
[2025-10-07 18:46:33] 2025-10-07 16:46:00,181 | INFO     | event service: False
[2025-10-07 18:46:33] 2025-10-07 16:46:00,181 | INFO     | sizes: {0: 2348823, 3: 2349085, 11: 2349113, 17193: 2381217, 17194: 2381216, 17196: 2390284, 17199: 2390468, 17208: 2390662}
[2025-10-07 18:46:33] 2025-10-07 16:46:00,181 | INFO     | --------------------------------------------------
[2025-10-07 18:46:33] 2025-10-07 16:46:00,181 | INFO     | 
[2025-10-07 18:46:33] 2025-10-07 16:46:00,181 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-07 18:46:33] 2025-10-07 16:46:00,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | job 6831276412 has completed (purged errors)
[2025-10-07 18:46:33] 2025-10-07 16:46:00,198 | INFO     | overall cleanup function is called
[2025-10-07 18:46:33] 2025-10-07 16:46:01,202 | INFO     | --- collectZombieJob: --- 10, [1020353]
[2025-10-07 18:46:33] 2025-10-07 16:46:01,203 | INFO     | zombie collector waiting for pid 1020353
[2025-10-07 18:46:33] 2025-10-07 16:46:01,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 18:46:33] 2025-10-07 16:46:01,203 | INFO     | collected zombie processes
[2025-10-07 18:46:33] 2025-10-07 16:46:01,203 | INFO     | will attempt to kill all subprocesses of pid=1020353
[2025-10-07 18:46:33] 2025-10-07 16:46:01,263 | INFO     | process IDs to be killed: [1020353] (in reverse order)
[2025-10-07 18:46:33] 2025-10-07 16:46:01,290 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 18:46:33] 2025-10-07 16:46:01,290 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 18:46:33] 2025-10-07 16:46:01,291 | INFO     | did not find any defunct processes belonging to 1020353
[2025-10-07 18:46:33] 2025-10-07 16:46:01,292 | INFO     | did not find any defunct processes belonging to 1020353
[2025-10-07 18:46:33] 2025-10-07 16:46:01,293 | INFO     | ready for new job
[2025-10-07 18:46:33] 2025-10-07 16:46:01,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 18:46:33] 2025-10-07 16:46:01,294 | INFO     | ***************************************
[2025-10-07 18:46:33] 2025-10-07 16:46:01,294 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 18:46:33] 2025-10-07 16:46:01,294 | INFO     | ***************************************
[2025-10-07 18:46:33] 2025-10-07 16:46:01,294 | INFO     | 
[2025-10-07 18:46:33] 2025-10-07 16:46:01,315 | INFO     | architecture information:
[2025-10-07 18:46:33] 2025-10-07 16:46:01,315 | INFO     | executing command: cat /etc/os-release
[2025-10-07 18:46:33] 2025-10-07 16:46:01,327 | INFO     | cat /etc/os-release:
[2025-10-07 18:46:33] NAME="CentOS Linux"
[2025-10-07 18:46:33] VERSION="7 (Core)"
[2025-10-07 18:46:33] ID="centos"
[2025-10-07 18:46:33] ID_LIKE="rhel fedora"
[2025-10-07 18:46:33] VERSION_ID="7"
[2025-10-07 18:46:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 18:46:33] ANSI_COLOR="0;31"
[2025-10-07 18:46:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 18:46:33] HOME_URL="https://www.centos.org/"
[2025-10-07 18:46:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 18:46:33] 
[2025-10-07 18:46:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 18:46:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 18:46:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 18:46:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 18:46:33] 
[2025-10-07 18:46:33] 2025-10-07 16:46:01,328 | INFO     | ***************************************
[2025-10-07 18:46:33] 2025-10-07 16:46:01,831 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-07 18:46:33] 2025-10-07 16:46:01,843 | INFO     | sufficient remaining disk space (418313666560 B)
[2025-10-07 18:46:33] 2025-10-07 16:46:01,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 18:46:33] 2025-10-07 16:46:01,843 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 18:46:33] 2025-10-07 16:46:01,843 | INFO     | update_server=False
[2025-10-07 18:46:33] 2025-10-07 16:46:01,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 18:46:33] 2025-10-07 16:46:01,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 18:46:33] 2025-10-07 16:46:01,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:46:33] 2025-10-07 16:46:01,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 18:46:33] 2025-10-07 16:46:01,858 | INFO     | all job control threads have been joined
[2025-10-07 18:46:33] 2025-10-07 16:46:02,059 | INFO     | all data control threads have been joined
[2025-10-07 18:46:33] 2025-10-07 16:46:02,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 18:46:33] 2025-10-07 16:46:02,780 | INFO     | aborting loop
[2025-10-07 18:46:33] 2025-10-07 16:46:02,847 | INFO     | [job] retrieve thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:02,847 | INFO     | [job] queue monitor thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:02,863 | INFO     | [job] control thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:02,871 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:02,907 | INFO     | [payload] validate_post thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:03,024 | INFO     | [data] copytool_in thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:03,063 | INFO     | [data] control thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:03,118 | INFO     | all payload control threads have been joined
[2025-10-07 18:46:33] 2025-10-07 16:46:03,158 | INFO     | [job] validate thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:03,415 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:03,557 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:03,784 | INFO     | [job] job monitor thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:03,850 | INFO     | [data] copytool_out thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:04,112 | INFO     | [payload] failed_post thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:04,123 | INFO     | [payload] control thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:05,849 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:12,321 | INFO     | job.realtimelogging is not enabled
[2025-10-07 18:46:33] 2025-10-07 16:46:13,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 18:46:33] 2025-10-07 16:46:27,291 | INFO     | [monitor] cgroup control has ended
[2025-10-07 18:46:33] 2025-10-07 16:46:28,480 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781979973440)>', '<ExcThread(monitor, started 139781321258752)>']
[2025-10-07 18:46:33] 2025-10-07 16:46:31,688 | INFO     | PID=1014017 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 18:46:33] 2025-10-07 16:46:31,688 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 18:46:33] 2025-10-07 16:46:31,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 18:46:33] 2025-10-07 16:46:31,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 18:46:33] 2025-10-07 16:46:31,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 18:46:33] 2025-10-07 16:46:31,689 | INFO     | [monitor] control thread has ended
[2025-10-07 18:46:33] 2025-10-07 16:46:33,499 | INFO     | all workflow threads have been joined
[2025-10-07 18:46:33] 2025-10-07 16:46:33,499 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 18:46:33] 2025-10-07 16:46:33,499 | INFO     | traces error code: 0
[2025-10-07 18:46:33] 2025-10-07 16:46:33,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 18:46:33] 2025-10-07 16:46:33,584 [wrapper] ==== pilot stdout END ====
[2025-10-07 18:46:33] 2025-10-07 16:46:33,585 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 18:46:33] 2025-10-07 16:46:33,587 [wrapper] pilotpid: 1014017
[2025-10-07 18:46:33] 2025-10-07 16:46:33,588 [wrapper] Pilot exit status: 0
[2025-10-07 18:46:33] 2025-10-07 16:46:33,594 [wrapper] pandaids: 6831276412
[2025-10-07 18:46:33] 2025-10-07 16:46:33,606 [wrapper] cleanup supervisor_pilot 1049323 1014018
[2025-10-07 18:46:33] 2025-10-07 16:46:33,608 [wrapper] Test setup, not cleaning
[2025-10-07 18:46:33] 2025-10-07 16:46:33,610 [wrapper] apfmon messages muted
[2025-10-07 18:46:33] 2025-10-07 16:46:33,611 [wrapper] ==== wrapper stdout END ====
[2025-10-07 18:46:33] 2025-10-07 16:46:33,613 [wrapper] ==== wrapper stderr END ====
[2025-10-07 18:46:33]  *** Error codes and diagnostics ***
[2025-10-07 18:46:33]     "exeErrorCode": 0,
[2025-10-07 18:46:33]     "exeErrorDiag": "",
[2025-10-07 18:46:33]     "pilotErrorCode": 0,
[2025-10-07 18:46:33]     "pilotErrorDiag": "",
[2025-10-07 18:46:33]  *** Listing of results directory ***
[2025-10-07 18:46:33] total 389580
[2025-10-07 18:46:33] -rw-r--r-- 1 root root    552446 Oct  5 11:49 pilot3.tar.gz
[2025-10-07 18:46:33] -rw-r--r-- 1 root root      5112 Oct  5 11:53 queuedata.json
[2025-10-07 18:46:33] -rwx------ 1 4871 1028     36292 Oct  5 11:53 runpilot2-wrapper.sh
[2025-10-07 18:46:33] -rw-r--r-- 1 root root       100 Oct  7 13:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 18:46:33] -rwxr-xr-x 1 root root      7986 Oct  7 13:58 run_atlas
[2025-10-07 18:46:33] -rw-r--r-- 1 root root       105 Oct  7 13:58 job.xml
[2025-10-07 18:46:33] -rw-r--r-- 2 root root     15120 Oct  7 13:58 start_atlas.sh
[2025-10-07 18:46:33] drwxrwx--x 2 root root      4096 Oct  7 13:58 shared
[2025-10-07 18:46:33] -rw-r--r-- 2 root root    565607 Oct  7 13:58 input.tar.gz
[2025-10-07 18:46:33] -rw-r--r-- 1 root root      6136 Oct  7 13:58 init_data.xml
[2025-10-07 18:46:33] -rw-r--r-- 2 root root 216061030 Oct  7 13:58 EVNT.46376901._002963.pool.root.1
[2025-10-07 18:46:33] -rw-r--r-- 1 root root         0 Oct  7 13:58 boinc_lockfile
[2025-10-07 18:46:33] -rw-r--r-- 1 root root      2519 Oct  7 13:58 pandaJob.out
[2025-10-07 18:46:33] -rw------- 1 root root    975010 Oct  7 13:58 agis_schedconf.cvmfs.json
[2025-10-07 18:46:33] drwxr-xr-x 4  320  320      4096 Oct  7 13:58 pilot3
[2025-10-07 18:46:33] -rw------- 1 root root 173446159 Oct  7 18:45 HITS.46376905._080925.pool.root.1
[2025-10-07 18:46:33] -rw-r--r-- 1 root root       530 Oct  7 18:45 boinc_task_state.xml
[2025-10-07 18:46:33] -rw------- 1 root root      1031 Oct  7 18:45 memory_monitor_summary.json
[2025-10-07 18:46:33] -rw------- 1 root root   1560401 Oct  7 18:45 agis_ddmendpoints.agis.ALL.json
[2025-10-07 18:46:33] -rw------- 1 root root    401783 Oct  7 18:45 log.46376905._080925.job.log.tgz.1
[2025-10-07 18:46:33] -rw------- 1 root root      7783 Oct  7 18:46 heartbeat.json
[2025-10-07 18:46:33] -rw-r--r-- 1 root root      8192 Oct  7 18:46 boinc_mmap_file
[2025-10-07 18:46:33] -rw-r--r-- 1 root root        28 Oct  7 18:46 wrapper_checkpoint.txt
[2025-10-07 18:46:33] -rw------- 1 root root        95 Oct  7 18:46 pilot_heartbeat.json
[2025-10-07 18:46:33] -rw------- 1 root root      4828 Oct  7 18:46 pilotlog.txt
[2025-10-07 18:46:33] -rw------- 1 root root   2364297 Oct  7 18:46 log.46376905._080925.job.log.1
[2025-10-07 18:46:33] -rw------- 1 root root       357 Oct  7 18:46 output.list
[2025-10-07 18:46:33] -rw-r--r-- 1 root root       620 Oct  7 18:46 runtime_log
[2025-10-07 18:46:33] -rw------- 1 root root   2785280 Oct  7 18:46 result.tar.gz
[2025-10-07 18:46:33] -rw-r--r-- 1 root root      8767 Oct  7 18:46 runtime_log.err
[2025-10-07 18:46:33] -rw------- 1 root root       653 Oct  7 18:46 NOVNDmibaP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvqFMDmwhIfEm.diag
[2025-10-07 18:46:33] -rw-r--r-- 1 root root     21218 Oct  7 18:46 stderr.txt
[2025-10-07 18:46:33] HITS file was successfully produced:
[2025-10-07 18:46:33] -rw------- 1 root root 173446159 Oct  7 18:45 shared/HITS.pool.root.1
[2025-10-07 18:46:33]  *** Contents of shared directory: ***
[2025-10-07 18:46:33] total 383680
[2025-10-07 18:46:33] -rw-r--r-- 2 root root     15120 Oct  7 13:58 start_atlas.sh
[2025-10-07 18:46:33] -rw-r--r-- 2 root root    565607 Oct  7 13:58 input.tar.gz
[2025-10-07 18:46:33] -rw-r--r-- 2 root root 216061030 Oct  7 13:58 ATLAS.root_0
[2025-10-07 18:46:33] -rw------- 1 root root 173446159 Oct  7 18:45 HITS.pool.root.1
[2025-10-07 18:46:33] -rw------- 1 root root   2785280 Oct  7 18:46 result.tar.gz
18:46:35 (1010379): run_atlas exited; CPU time 33700.566745
18:46:35 (1010379): called boinc_finish(0)

</stderr_txt>
]]>

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