Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:29:54 (1387761): wrapper (7.7.26015): starting
12:29:54 (1387761): wrapper: running run_atlas (--nthreads 4)
[2025-10-07 12:29:54] Arguments: --nthreads 4
[2025-10-07 12:29:54] Threads: 4
[2025-10-07 12:29:54] Checking for CVMFS
[2025-10-07 12:29:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 12:29:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 12:29:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 12:29:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 12:29:54] 2.9.2.0 826222 1358 87740 151434 1 57 21522589 36864001 0 130560 0 1486570 99.992 52010 1270 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-07 12:29:54] CVMFS is ok
[2025-10-07 12:29:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 12:29:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 12:29:54] Further information can be found at the LHC@home message board.
[2025-10-07 12:29:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 12:29:54] Checking for apptainer binary...
[2025-10-07 12:29:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 12:29:54] Running /usr/bin/apptainer --version
[2025-10-07 12:29:55] apptainer version 1.4.1-1.1
[2025-10-07 12:29:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 12:29:55] thA315b
[2025-10-07 12:29:55] apptainer works
[2025-10-07 12:29:55] Set ATHENA_PROC_NUMBER=4
[2025-10-07 12:29:55] Set ATHENA_CORE_NUMBER=4
[2025-10-07 12:29:55] Starting ATLAS job with PandaID=6833157911
[2025-10-07 12:29:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 13:25:11]  *** The last 200 lines of the pilot log: ***
[2025-10-07 13:25:11] 2025-10-07 11:24:49,093 | INFO     | 
[2025-10-07 13:25:11] 2025-10-07 11:24:49,093 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-07 13:25:11] 2025-10-07 11:24:49,107 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,107 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | job 6833157911 has completed (purged errors)
[2025-10-07 13:25:11] 2025-10-07 11:24:49,108 | INFO     | overall cleanup function is called
[2025-10-07 13:25:11] 2025-10-07 11:24:50,115 | INFO     | --- collectZombieJob: --- 10, [1398120]
[2025-10-07 13:25:11] 2025-10-07 11:24:50,115 | INFO     | zombie collector waiting for pid 1398120
[2025-10-07 13:25:11] 2025-10-07 11:24:50,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 13:25:11] 2025-10-07 11:24:50,116 | INFO     | collected zombie processes
[2025-10-07 13:25:11] 2025-10-07 11:24:50,116 | INFO     | will attempt to kill all subprocesses of pid=1398120
[2025-10-07 13:25:11] 2025-10-07 11:24:50,161 | INFO     | process IDs to be killed: [1398120] (in reverse order)
[2025-10-07 13:25:11] 2025-10-07 11:24:50,188 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 13:25:11] 2025-10-07 11:24:50,188 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 13:25:11] 2025-10-07 11:24:50,189 | INFO     | did not find any defunct processes belonging to 1398120
[2025-10-07 13:25:11] 2025-10-07 11:24:50,190 | INFO     | did not find any defunct processes belonging to 1398120
[2025-10-07 13:25:11] 2025-10-07 11:24:50,190 | INFO     | ready for new job
[2025-10-07 13:25:11] 2025-10-07 11:24:50,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 13:25:11] 2025-10-07 11:24:50,191 | INFO     | ***************************************
[2025-10-07 13:25:11] 2025-10-07 11:24:50,191 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 13:25:11] 2025-10-07 11:24:50,191 | INFO     | ***************************************
[2025-10-07 13:25:11] 2025-10-07 11:24:50,191 | INFO     | 
[2025-10-07 13:25:11] 2025-10-07 11:24:50,192 | INFO     | architecture information:
[2025-10-07 13:25:11] 2025-10-07 11:24:50,192 | INFO     | executing command: cat /etc/os-release
[2025-10-07 13:25:11] 2025-10-07 11:24:50,202 | INFO     | cat /etc/os-release:
[2025-10-07 13:25:11] NAME="CentOS Linux"
[2025-10-07 13:25:11] VERSION="7 (Core)"
[2025-10-07 13:25:11] ID="centos"
[2025-10-07 13:25:11] ID_LIKE="rhel fedora"
[2025-10-07 13:25:11] VERSION_ID="7"
[2025-10-07 13:25:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 13:25:11] ANSI_COLOR="0;31"
[2025-10-07 13:25:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 13:25:11] HOME_URL="https://www.centos.org/"
[2025-10-07 13:25:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 13:25:11] 
[2025-10-07 13:25:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 13:25:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 13:25:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 13:25:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 13:25:11] 
[2025-10-07 13:25:11] 2025-10-07 11:24:50,202 | INFO     | ***************************************
[2025-10-07 13:25:11] 2025-10-07 11:24:50,705 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-07 13:25:11] 2025-10-07 11:24:50,718 | INFO     | sufficient remaining disk space (339195461632 B)
[2025-10-07 13:25:11] 2025-10-07 11:24:50,718 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 13:25:11] 2025-10-07 11:24:50,718 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 13:25:11] 2025-10-07 11:24:50,718 | INFO     | update_server=False
[2025-10-07 13:25:11] 2025-10-07 11:24:50,718 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 13:25:11] 2025-10-07 11:24:50,719 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:25:11] 2025-10-07 11:24:50,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 13:25:11] 2025-10-07 11:24:50,719 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-07 13:25:11] 2025-10-07 11:24:50,719 | INFO     | aborting loop
[2025-10-07 13:25:11] 2025-10-07 11:24:50,719 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 13:25:11] 2025-10-07 11:24:50,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 13:25:11] 2025-10-07 11:24:50,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 13:25:11] 2025-10-07 11:24:51,229 | INFO     | all data control threads have been joined
[2025-10-07 13:25:11] 2025-10-07 11:24:51,323 | INFO     | all payload control threads have been joined
[2025-10-07 13:25:11] 2025-10-07 11:24:51,646 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 13:25:11] 2025-10-07 11:24:51,724 | INFO     | [job] retrieve thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:51,724 | INFO     | [job] queue monitor thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:51,725 | INFO     | [job] job monitor thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:51,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 13:25:11] 2025-10-07 11:24:52,039 | INFO     | all job control threads have been joined
[2025-10-07 13:25:11] 2025-10-07 11:24:52,073 | INFO     | [payload] validate_post thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:52,235 | INFO     | [data] control thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:52,329 | INFO     | [payload] control thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:52,748 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:52,897 | INFO     | [data] copytool_in thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:53,008 | INFO     | [payload] failed_post thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:53,044 | INFO     | [job] control thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:53,100 | INFO     | [job] validate thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:53,153 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:53,203 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:53,652 | INFO     | [data] copytool_out thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:24:55,952 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:25:01,348 | INFO     | job.realtimelogging is not enabled
[2025-10-07 13:25:11] 2025-10-07 11:25:02,354 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 13:25:11] 2025-10-07 11:25:05,011 | INFO     | [monitor] cgroup control has ended
[2025-10-07 13:25:11] 2025-10-07 11:25:06,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850953049920)>', '<ExcThread(monitor, started 139850602751744)>']
[2025-10-07 13:25:11] 2025-10-07 11:25:06,795 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 13:25:11] 2025-10-07 11:25:06,796 | INFO     | [monitor] control thread has ended
[2025-10-07 13:25:11] 2025-10-07 11:25:11,719 | INFO     | all workflow threads have been joined
[2025-10-07 13:25:11] 2025-10-07 11:25:11,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 13:25:11] 2025-10-07 11:25:11,720 | INFO     | traces error code: 0
[2025-10-07 13:25:11] 2025-10-07 11:25:11,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 13:25:11] 2025-10-07 11:25:11,773 [wrapper] ==== pilot stdout END ====
[2025-10-07 13:25:11] 2025-10-07 11:25:11,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 13:25:11] 2025-10-07 11:25:11,778 [wrapper] pilotpid: 1391560
[2025-10-07 13:25:11] 2025-10-07 11:25:11,781 [wrapper] Pilot exit status: 0
[2025-10-07 13:25:11] 2025-10-07 11:25:11,789 [wrapper] pandaids: 6833157911
[2025-10-07 13:25:11] 2025-10-07 11:25:11,807 [wrapper] cleanup supervisor_pilot 1408393 1391561
[2025-10-07 13:25:11] 2025-10-07 11:25:11,810 [wrapper] Test setup, not cleaning
[2025-10-07 13:25:11] 2025-10-07 11:25:11,812 [wrapper] apfmon messages muted
[2025-10-07 13:25:11] 2025-10-07 11:25:11,814 [wrapper] ==== wrapper stdout END ====
[2025-10-07 13:25:11] 2025-10-07 11:25:11,817 [wrapper] ==== wrapper stderr END ====
[2025-10-07 13:25:11]  *** Error codes and diagnostics ***
[2025-10-07 13:25:11]     "exeErrorCode": 0,
[2025-10-07 13:25:11]     "exeErrorDiag": "",
[2025-10-07 13:25:11]     "pilotErrorCode": 0,
[2025-10-07 13:25:11]     "pilotErrorDiag": "",
[2025-10-07 13:25:11]  *** Listing of results directory ***
[2025-10-07 13:25:11] total 389200
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc    552446 Oct  7 02:12 pilot3.tar.gz
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc      5112 Oct  7 02:27 queuedata.json
[2025-10-07 13:25:11] -rwx------ 1 boinc boinc     36292 Oct  7 02:27 runpilot2-wrapper.sh
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc       100 Oct  7 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 13:25:11] -rwxr-xr-x 1 boinc boinc      7986 Oct  7 12:29 run_atlas
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc       105 Oct  7 12:29 job.xml
[2025-10-07 13:25:11] -rw-r--r-- 2 boinc boinc 214305879 Oct  7 12:29 EVNT.46376901._004585.pool.root.1
[2025-10-07 13:25:11] -rw-r--r-- 2 boinc boinc    565600 Oct  7 12:29 input.tar.gz
[2025-10-07 13:25:11] -rw-r--r-- 2 boinc boinc     15120 Oct  7 12:29 start_atlas.sh
[2025-10-07 13:25:11] drwxrwx--x 2 boinc boinc      4096 Oct  7 12:29 shared
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc         0 Oct  7 12:29 boinc_setup_complete
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc      6443 Oct  7 12:29 init_data.xml
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc         0 Oct  7 12:29 boinc_lockfile
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc      2521 Oct  7 12:29 pandaJob.out
[2025-10-07 13:25:11] -rw------- 1 boinc boinc    975010 Oct  7 12:30 agis_schedconf.cvmfs.json
[2025-10-07 13:25:11] -rw------- 1 boinc boinc   1560401 Oct  7 12:30 agis_ddmendpoints.agis.ALL.json
[2025-10-07 13:25:11] drwx------ 4 boinc boinc      4096 Oct  7 12:30 pilot3
[2025-10-07 13:25:11] -rw------- 1 boinc boinc        95 Oct  7 13:24 pilot_heartbeat.json
[2025-10-07 13:25:11] -rw------- 1 boinc boinc 178858732 Oct  7 13:24 HITS.46376905._123568.pool.root.1
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc       529 Oct  7 13:24 boinc_task_state.xml
[2025-10-07 13:25:11] -rw------- 1 boinc boinc      1020 Oct  7 13:24 memory_monitor_summary.json
[2025-10-07 13:25:11] -rw------- 1 boinc boinc    247080 Oct  7 13:24 log.46376905._123568.job.log.tgz.1
[2025-10-07 13:25:11] -rw------- 1 boinc boinc      7750 Oct  7 13:24 heartbeat.json
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc      8192 Oct  7 13:24 boinc_mmap_file
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc        27 Oct  7 13:24 wrapper_checkpoint.txt
[2025-10-07 13:25:11] -rw------- 1 boinc boinc      4628 Oct  7 13:25 pilotlog.txt
[2025-10-07 13:25:11] -rw------- 1 boinc boinc    497620 Oct  7 13:25 log.46376905._123568.job.log.1
[2025-10-07 13:25:11] -rw------- 1 boinc boinc       357 Oct  7 13:25 output.list
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc       620 Oct  7 13:25 runtime_log
[2025-10-07 13:25:11] -rw------- 1 boinc boinc    768000 Oct  7 13:25 result.tar.gz
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc      8782 Oct  7 13:25 runtime_log.err
[2025-10-07 13:25:11] -rw------- 1 boinc boinc       658 Oct  7 13:25 f0HLDmWjAQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvOVNDmcsf5Tm.diag
[2025-10-07 13:25:11] -rw-r--r-- 1 boinc boinc     13017 Oct  7 13:25 stderr.txt
[2025-10-07 13:25:11] HITS file was successfully produced:
[2025-10-07 13:25:11] -rw------- 1 boinc boinc 178858732 Oct  7 13:24 shared/HITS.pool.root.1
[2025-10-07 13:25:11]  *** Contents of shared directory: ***
[2025-10-07 13:25:11] total 385284
[2025-10-07 13:25:11] -rw-r--r-- 2 boinc boinc 214305879 Oct  7 12:29 ATLAS.root_0
[2025-10-07 13:25:11] -rw-r--r-- 2 boinc boinc    565600 Oct  7 12:29 input.tar.gz
[2025-10-07 13:25:11] -rw-r--r-- 2 boinc boinc     15120 Oct  7 12:29 start_atlas.sh
[2025-10-07 13:25:11] -rw------- 1 boinc boinc 178858732 Oct  7 13:24 HITS.pool.root.1
[2025-10-07 13:25:11] -rw------- 1 boinc boinc    768000 Oct  7 13:25 result.tar.gz
13:25:13 (1387761): run_atlas exited; CPU time 12137.958556
13:25:13 (1387761): called boinc_finish(0)

</stderr_txt>
]]>

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