Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:12:43 (3246361): wrapper (7.7.26015): starting
23:12:43 (3246361): wrapper: running run_atlas (--nthreads 12)
[2025-10-06 23:12:43] Arguments: --nthreads 12
[2025-10-06 23:12:43] Threads: 12
[2025-10-06 23:12:43] Checking for CVMFS
[2025-10-06 23:12:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 23:12:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 23:12:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 23:12:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 23:12:45] 2.11.5.0 2733 23919 219568 151425 3 575 41340360 45568001 18829 130560 0 216437105 99.870 93349769 23115 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-06 23:12:45] CVMFS is ok
[2025-10-06 23:12:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 23:12:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 23:12:45] Further information can be found at the LHC@home message board.
[2025-10-06 23:12:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 23:12:45] Checking for apptainer binary...
[2025-10-06 23:12:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 23:12:45] Running /usr/bin/apptainer --version
[2025-10-06 23:12:45] apptainer version 1.4.1-1.el9
[2025-10-06 23:12:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 23:12:45] wns0033.triumf.lcg
[2025-10-06 23:12:45] apptainer works
[2025-10-06 23:12:45] Set ATHENA_PROC_NUMBER=12
[2025-10-06 23:12:45] Set ATHENA_CORE_NUMBER=12
[2025-10-06 23:12:45] Starting ATLAS job with PandaID=6833166666
[2025-10-06 23:12:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 23:17:29]  *** The last 200 lines of the pilot log: ***
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | WARNING  | wrong length of table data, x=[1759817663.0], y=[800.0] (must be same and length>=4)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | could have reported an average CPU frequency of 2718 MHz (4 samples)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | ..............................
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . Timing measurements:
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . get job = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . initial setup = 3 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . payload setup = 19 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . stage-in = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . payload execution = 30 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . stage-out = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . log creation = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | ..............................
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 23:17:29] 2025-10-07 06:16:55,427 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6833166666/pilotlog.txt
[2025-10-06 23:17:29] 2025-10-07 06:16:55,438 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-06 23:17:29] - Log from pilotlog.txt -
[2025-10-06 23:17:29] 2025-10-07 06:16:55,424 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6833166666/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | INFO     | extracted standard info from prmon json
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | WARNING  | wrong length of table data, x=[1759817663.0], y=[800.0] (must be same and length>=4)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | could have reported an average CPU frequency of 2718 MHz (4 samples)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | ..............................
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . Timing measurements:
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . get job = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . initial setup = 3 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . payload setup = 19 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . stage-in = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . payload execution = 30 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . stage-out = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . log creation = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | ..............................
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 23:17:29] 2025-10-07 06:16:55,427 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6833166666/pilotlog.txt
[2025-10-06 23:17:29] 2025-10-07 06:16:55,439 | WARNING  | 
[2025-10-06 23:17:29] [begin log extracts]
[2025-10-06 23:17:29] - Log from pilotlog.txt -
[2025-10-06 23:17:29] 2025-10-07 06:16:55,424 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6833166666/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | INFO     | extracted standard info from prmon json
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 23:17:29] 2025-10-07 06:16:55,425 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | WARNING  | wrong length of table data, x=[1759817663.0], y=[800.0] (must be same and length>=4)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | could have reported an average CPU frequency of 2718 MHz (4 samples)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | ..............................
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . Timing measurements:
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . get job = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . initial setup = 3 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . payload setup = 19 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . stage-in = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . payload execution = 30 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . stage-out = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | . log creation = 0 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | ..............................
[2025-10-06 23:17:29] 2025-10-07 06:16:55,426 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 23:17:29] 2025-10-07 06:16:55,427 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6833166666/pilotlog.txt
[2025-10-06 23:17:29] [end log extracts]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,439 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,440 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-06 23:17:29] 2025-10-07 06:16:55,496 | INFO     | 
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | job summary report
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | --------------------------------------------------
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | PanDA job id: 6833166666
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | task id: 46376905
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-06 23:14:35,948 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | pilot state: failed 
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | transexitcode: 65
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | exeerrorcode: 65
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | exitcode: 65
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | cpuconsumptiontime: 16 s
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | nevents: 0
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | neventsw: 0
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | pid: 3256761
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | pgrp: 3256761
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | corecount: 12
[2025-10-06 23:17:29] 2025-10-07 06:16:55,497 | INFO     | event service: False
[2025-10-06 23:17:29] 2025-10-07 06:16:55,498 | INFO     | sizes: {0: 2348646, 1: 2348845, 2: 2348873, 13: 2348873, 17: 2349191, 24: 2349219, 54: 2376870, 185: 2377008}
[2025-10-06 23:17:29] 2025-10-07 06:16:55,498 | INFO     | --------------------------------------------------
[2025-10-06 23:17:29] 2025-10-07 06:16:55,498 | INFO     | 
[2025-10-06 23:17:29] 2025-10-07 06:16:55,498 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | job 6833166666 has completed (purged errors)
[2025-10-06 23:17:29] 2025-10-07 06:16:55,516 | INFO     | overall cleanup function is called
[2025-10-06 23:17:29] 2025-10-07 06:16:56,528 | INFO     | --- collectZombieJob: --- 10, [3256761]
[2025-10-06 23:17:29] 2025-10-07 06:16:56,528 | INFO     | zombie collector waiting for pid 3256761
[2025-10-06 23:17:29] 2025-10-07 06:16:56,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 23:17:29] 2025-10-07 06:16:56,528 | INFO     | collected zombie processes
[2025-10-06 23:17:29] 2025-10-07 06:16:56,528 | INFO     | will attempt to kill all subprocesses of pid=3256761
[2025-10-06 23:17:29] 2025-10-07 06:16:56,911 | INFO     | process IDs to be killed: [3256761] (in reverse order)
[2025-10-06 23:17:29] 2025-10-07 06:16:57,147 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 23:17:29] 2025-10-07 06:16:57,147 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 23:17:29] 2025-10-07 06:16:57,179 | INFO     | did not find any defunct processes belonging to 3256761
[2025-10-06 23:17:29] 2025-10-07 06:16:57,216 | INFO     | did not find any defunct processes belonging to 3256761
[2025-10-06 23:17:29] 2025-10-07 06:16:57,216 | INFO     | ready for new job
[2025-10-06 23:17:29] 2025-10-07 06:16:57,216 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 23:17:29] 2025-10-07 06:16:57,217 | INFO     | ***************************************
[2025-10-06 23:17:29] 2025-10-07 06:16:57,217 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 23:17:29] 2025-10-07 06:16:57,217 | INFO     | ***************************************
[2025-10-06 23:17:29] 2025-10-07 06:16:57,217 | INFO     | 
[2025-10-06 23:17:29] 2025-10-07 06:16:57,235 | INFO     | architecture information:
[2025-10-06 23:17:29] 2025-10-07 06:16:57,250 | INFO     | executing command: cat /etc/os-release
[2025-10-06 23:17:29] 2025-10-07 06:16:57,309 | INFO     | cat /etc/os-release:
[2025-10-06 23:17:29] NAME="CentOS Linux"
[2025-10-06 23:17:29] VERSION="7 (Core)"
[2025-10-06 23:17:29] ID="centos"
[2025-10-06 23:17:29] ID_LIKE="rhel fedora"
[2025-10-06 23:17:29] VERSION_ID="7"
[2025-10-06 23:17:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 23:17:29] ANSI_COLOR="0;31"
[2025-10-06 23:17:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 23:17:29] HOME_URL="https://www.centos.org/"
[2025-10-06 23:17:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 23:17:29] 
[2025-10-06 23:17:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 23:17:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 23:17:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 23:17:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 23:17:29] 
[2025-10-06 23:17:29] 2025-10-07 06:16:57,310 | INFO     | ***************************************
[2025-10-06 23:17:29] 2025-10-07 06:16:57,813 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-06 23:17:29] 2025-10-07 06:16:57,902 | INFO     | sufficient remaining disk space (2075825012736 B)
[2025-10-06 23:17:29] 2025-10-07 06:16:57,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 23:17:29] 2025-10-07 06:16:57,903 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 23:17:29] 2025-10-07 06:16:57,903 | INFO     | update_server=False
[2025-10-06 23:17:29] 2025-10-07 06:16:57,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 23:17:29] 2025-10-07 06:16:57,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 23:17:29] 2025-10-07 06:16:57,907 | INFO     | aborting loop
[2025-10-06 23:17:29] 2025-10-07 06:16:57,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 23:17:29] 2025-10-07 06:16:57,923 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 23:17:29] 2025-10-07 06:16:57,963 | INFO     | all job control threads have been joined
[2025-10-06 23:17:29] 2025-10-07 06:16:58,176 | INFO     | all payload control threads have been joined
[2025-10-06 23:17:29] 2025-10-07 06:16:58,201 | INFO     | all data control threads have been joined
[2025-10-06 23:17:29] 2025-10-07 06:16:58,909 | INFO     | [job] retrieve thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:58,913 | INFO     | [job] job monitor thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:58,952 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:58,974 | INFO     | [job] control thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:58,987 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,182 | INFO     | [payload] control thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,207 | INFO     | [data] control thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,240 | INFO     | [payload] validate_post thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,586 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,678 | INFO     | [job] validate thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,841 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,923 | INFO     | [data] copytool_out thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:16:59,954 | INFO     | [payload] failed_post thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:17:00,086 | INFO     | [data] copytool_in thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:17:00,513 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 23:17:29] 2025-10-07 06:17:01,519 | INFO     | [job] queue monitor thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:17:01,932 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 23:17:29] 2025-10-07 06:17:11,453 | INFO     | [monitor] cgroup control has ended
[2025-10-06 23:17:29] 2025-10-07 06:17:11,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140422364661568)>', '<ExcThread(monitor, started 140421967619840)>']
[2025-10-06 23:17:29] 2025-10-07 06:17:16,488 | INFO     | all workflow threads have been joined
[2025-10-06 23:17:29] 2025-10-07 06:17:16,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 23:17:29] 2025-10-07 06:17:16,489 | INFO     | traces error code: 0
[2025-10-06 23:17:29] 2025-10-07 06:17:16,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 23:17:29] 2025-10-07 06:17:28,046 | INFO     | PID=3250076 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 23:17:29] 2025-10-07 06:17:28,046 | INFO     | .. there are 28 such processes running
[2025-10-06 23:17:29] 2025-10-07 06:17:28,047 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 23:17:29] 2025-10-07 06:17:28,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 23:17:29] 2025-10-07 06:17:28,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 23:17:29] 2025-10-07 06:17:28,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 23:17:29] 2025-10-07 06:17:28,047 | INFO     | [monitor] control thread has ended
[2025-10-06 23:17:29] 2025-10-07 06:17:28,195 [wrapper] ==== pilot stdout END ====
[2025-10-06 23:17:29] 2025-10-07 06:17:28,205 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 23:17:29] 2025-10-07 06:17:28,241 [wrapper] pilotpid: 3250076
[2025-10-06 23:17:29] 2025-10-07 06:17:28,266 [wrapper] Pilot exit status: 0
[2025-10-06 23:17:29] 2025-10-07 06:17:28,312 [wrapper] pandaids: 6833166666
[2025-10-06 23:17:29] 2025-10-07 06:17:28,355 [wrapper] cleanup supervisor_pilot 3250082 3250077
[2025-10-06 23:17:29] 2025-10-07 06:17:28,358 [wrapper] Test setup, not cleaning
[2025-10-06 23:17:29] 2025-10-07 06:17:28,360 [wrapper] apfmon messages muted
[2025-10-06 23:17:29] 2025-10-07 06:17:28,362 [wrapper] ==== wrapper stdout END ====
[2025-10-06 23:17:29] 2025-10-07 06:17:28,364 [wrapper] ==== wrapper stderr END ====
[2025-10-06 23:17:29]  *** Error codes and diagnostics ***
[2025-10-06 23:17:29]     "exeErrorCode": 65,
[2025-10-06 23:17:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 23:17:29]     "pilotErrorCode": 1305,
[2025-10-06 23:17:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 23:17:29]  *** Listing of results directory ***
[2025-10-06 23:17:29] total 212032
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc    552446 Oct  6 20:46 pilot3.tar.gz
[2025-10-06 23:17:29] -rwx------. 1 boinc boinc     36292 Oct  6 21:01 runpilot2-wrapper.sh
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc      5112 Oct  6 21:01 queuedata.json
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc       100 Oct  6 23:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 23:17:29] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 23:12 run_atlas
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc       105 Oct  6 23:12 job.xml
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc      6593 Oct  6 23:12 init_data.xml
[2025-10-06 23:17:29] -rw-r--r--. 2 boinc boinc 213010395 Oct  6 23:12 EVNT.46376901._004733.pool.root.1
[2025-10-06 23:17:29] -rw-r--r--. 2 boinc boinc     15120 Oct  6 23:12 start_atlas.sh
[2025-10-06 23:17:29] drwxrwx--x. 2 boinc boinc      4096 Oct  6 23:12 shared
[2025-10-06 23:17:29] -rw-r--r--. 2 boinc boinc    565598 Oct  6 23:12 input.tar.gz
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc         0 Oct  6 23:12 boinc_lockfile
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc      2521 Oct  6 23:12 pandaJob.out
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc    974984 Oct  6 23:13 agis_schedconf.cvmfs.json
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc   1560401 Oct  6 23:13 agis_ddmendpoints.agis.ALL.json
[2025-10-06 23:17:29] drwx------. 4 boinc boinc      4096 Oct  6 23:13 pilot3
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc       950 Oct  6 23:14 memory_monitor_summary.json
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc     22026 Oct  6 23:14 log.46376905._127250.job.log.tgz.1
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc      8411 Oct  6 23:16 heartbeat.json
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc        22 Oct  6 23:17 wrapper_checkpoint.txt
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc      8192 Oct  6 23:17 boinc_mmap_file
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc        95 Oct  6 23:17 pilot_heartbeat.json
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc       823 Oct  6 23:17 pilotlog.txt
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc     88818 Oct  6 23:17 log.46376905._127250.job.log.1
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc       188 Oct  6 23:17 output.list
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc       620 Oct  6 23:17 runtime_log
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc    133120 Oct  6 23:17 result.tar.gz
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc       523 Oct  6 23:17 boinc_task_state.xml
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc      8528 Oct  6 23:17 runtime_log.err
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc       643 Oct  6 23:17 eEsKDml4DQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRyVNDm4E2vym.diag
[2025-10-06 23:17:29] -rw-r--r--. 1 boinc boinc     21785 Oct  6 23:17 stderr.txt
[2025-10-06 23:17:29] No HITS result produced
[2025-10-06 23:17:29]  *** Contents of shared directory: ***
[2025-10-06 23:17:29] total 208728
[2025-10-06 23:17:29] -rw-r--r--. 2 boinc boinc 213010395 Oct  6 23:12 ATLAS.root_0
[2025-10-06 23:17:29] -rw-r--r--. 2 boinc boinc     15120 Oct  6 23:12 start_atlas.sh
[2025-10-06 23:17:29] -rw-r--r--. 2 boinc boinc    565598 Oct  6 23:12 input.tar.gz
[2025-10-06 23:17:29] -rw-------. 1 boinc boinc    133120 Oct  6 23:17 result.tar.gz
23:17:30 (3246361): run_atlas exited; CPU time 25.414100
23:17:30 (3246361): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN