Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:35:07 (22082): wrapper (7.7.26015): starting
01:35:07 (22082): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 01:35:07] Arguments: --nthreads 12
[2025-10-07 01:35:07] Threads: 12
[2025-10-07 01:35:07] Checking for CVMFS
[2025-10-07 01:35:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 01:35:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 01:35:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 01:35:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 01:35:08] 2.11.2.0 2924 215222 102388 151425 0 57 17957286 20275201 1 130560 4 103706330 99.983 13540654 12786 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-07 01:35:08] CVMFS is ok
[2025-10-07 01:35:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 01:35:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 01:35:08] Further information can be found at the LHC@home message board.
[2025-10-07 01:35:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 01:35:08] Checking for apptainer binary...
[2025-10-07 01:35:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 01:35:08] Running /usr/bin/apptainer --version
[2025-10-07 01:35:08] apptainer version 1.3.2-1.el7
[2025-10-07 01:35:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 01:35:09] c-205-28.aglt2.org
[2025-10-07 01:35:09] apptainer works
[2025-10-07 01:35:09] Set ATHENA_PROC_NUMBER=12
[2025-10-07 01:35:09] Set ATHENA_CORE_NUMBER=12
[2025-10-07 01:35:09] Starting ATLAS job with PandaID=6833155733
[2025-10-07 01:35:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 02:41:36]  *** The last 200 lines of the pilot log: ***
[2025-10-07 02:41:36]  status=None
[2025-10-07 02:41:36]  status_code=0
[2025-10-07 02:41:36]  storage_token=
[2025-10-07 02:41:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6833155733/log.46376905._122604.job.log.tgz.1
[2025-10-07 02:41:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/b1/log.46376905._122604.job.log.tgz.1
[2025-10-07 02:41:36]  workdir=None
[2025-10-07 02:41:36] ]
[2025-10-07 02:41:36] 2025-10-07 06:40:47,069 | INFO     | transferring file log.46376905._122604.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6833155733/log.46376905._122604.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-07 02:41:36] 2025-10-07 06:40:47,069 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6833155733/log.46376905._122604.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._122604.job
[2025-10-07 02:41:36] 2025-10-07 06:40:47,091 | INFO     | adding to output.list: log.46376905._122604.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/b1/log.46376905._122604.job.log.tg
[2025-10-07 02:41:36] 2025-10-07 06:40:47,092 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 02:41:36] 2025-10-07 06:40:47,092 | INFO     | summary of transferred files:
[2025-10-07 02:41:36] 2025-10-07 06:40:47,092 | INFO     |  -- lfn=log.46376905._122604.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 02:41:36] 2025-10-07 06:40:47,093 | INFO     | stage-out finished correctly
[2025-10-07 02:41:36] 2025-10-07 06:40:48,719 | INFO     | time since job start (3924s) is within the limit (172800.0s)
[2025-10-07 02:41:36] 2025-10-07 06:40:49,009 | WARNING  | process 32509 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 02:41:36] 2025-10-07 06:40:49,010 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833155733/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 02:41:36] 2025-10-07 06:40:49,099 | INFO     | number of running child processes to parent process 32509: 1
[2025-10-07 02:41:36] 2025-10-07 06:40:49,099 | INFO     | maximum number of monitored processes: 6
[2025-10-07 02:41:36] 2025-10-07 06:40:49,835 | INFO     | PID=26138 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 02:41:36] 2025-10-07 06:40:50,550 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 02:41:36] 2025-10-07 06:40:50,635 | INFO     | job 6833155733 has state=finished
[2025-10-07 02:41:36] 2025-10-07 06:40:50,636 | INFO     | preparing for final server update for job 6833155733 in state='finished'
[2025-10-07 02:41:36] 2025-10-07 06:40:50,636 | INFO     | this job has now completed (state=finished)
[2025-10-07 02:41:36] 2025-10-07 06:40:50,637 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 02:41:36] 2025-10-07 06:40:50,637 | INFO     | log transfer has been attempted: DONE
[2025-10-07 02:41:36] 2025-10-07 06:40:50,637 | INFO     | job 6833155733 has finished - writing final server update
[2025-10-07 02:41:36] 2025-10-07 06:40:50,637 | INFO     | total number of processed events: 400 (read)
[2025-10-07 02:41:36] 2025-10-07 06:40:50,638 | INFO     | executing command: lscpu
[2025-10-07 02:41:36] 2025-10-07 06:40:50,664 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 02:41:36] 2025-10-07 06:40:50,836 | INFO     | time since job start (3926s) is within the limit (172800.0s)
[2025-10-07 02:41:36] 2025-10-07 06:40:51,602 | INFO     | monitor loop #293: job 0:6833155733 is in state 'finished'
[2025-10-07 02:41:36] 2025-10-07 06:40:51,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 02:41:36] 2025-10-07 06:40:52,841 | INFO     | time since job start (3928s) is within the limit (172800.0s)
[2025-10-07 02:41:36] 2025-10-07 06:40:54,103 | INFO     | monitor loop #294: job 0:6833155733 is in state 'finished'
[2025-10-07 02:41:36] 2025-10-07 06:40:54,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 02:41:36] 2025-10-07 06:40:54,847 | INFO     | time since job start (3930s) is within the limit (172800.0s)
[2025-10-07 02:41:36] 2025-10-07 06:40:55,374 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-07 02:41:36] 2025-10-07 06:40:55,378 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-07 02:41:36] 2025-10-07 06:40:55,381 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6833155733/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 02:41:36] 2025-10-07 06:40:55,382 | INFO     | extracted standard info from prmon json
[2025-10-07 02:41:36] 2025-10-07 06:40:55,382 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 02:41:36] 2025-10-07 06:40:55,382 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 02:41:36] 2025-10-07 06:40:55,383 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 02:41:36] 2025-10-07 06:40:55,383 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 02:41:36] 2025-10-07 06:40:55,385 | INFO     | fitting pss+swap vs Time
[2025-10-07 02:41:36] 2025-10-07 06:40:55,385 | INFO     | sum of square deviations: 57407588.0
[2025-10-07 02:41:36] 2025-10-07 06:40:55,385 | INFO     | sum of deviations: -484507140.0
[2025-10-07 02:41:36] 2025-10-07 06:40:55,385 | INFO     | mean x: 1759817366.0
[2025-10-07 02:41:36] 2025-10-07 06:40:55,385 | INFO     | mean y: 2939522.4385964912
[2025-10-07 02:41:36] 2025-10-07 06:40:55,385 | INFO     | -- intersect: 14855402561.348946
[2025-10-07 02:41:36] 2025-10-07 06:40:55,386 | INFO     | intersect: 14855402561.348946
[2025-10-07 02:41:36] 2025-10-07 06:40:55,386 | INFO     | chi2: 0.028743629235806218
[2025-10-07 02:41:36] 2025-10-07 06:40:55,386 | INFO     | -- intersect: 14855402561.348946
[2025-10-07 02:41:36] 2025-10-07 06:40:55,386 | INFO     | current memory leak: -8.44 B/s (using 57 data points, chi2=0.03)
[2025-10-07 02:41:36] 2025-10-07 06:40:55,386 | INFO     | could have reported an average CPU frequency of 2026 MHz (6 samples)
[2025-10-07 02:41:36] 2025-10-07 06:40:55,386 | INFO     | ..............................
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . Timing measurements:
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . get job = 0 s
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . initial setup = 2 s
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . payload setup = 7 s
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . stage-in = 0 s
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . payload execution = 3894 s
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . stage-out = 0 s
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | . log creation = 0 s
[2025-10-07 02:41:36] 2025-10-07 06:40:55,387 | INFO     | ..............................
[2025-10-07 02:41:36] 2025-10-07 06:40:56,131 | INFO     | 
[2025-10-07 02:41:36] 2025-10-07 06:40:56,131 | INFO     | job summary report
[2025-10-07 02:41:36] 2025-10-07 06:40:56,131 | INFO     | --------------------------------------------------
[2025-10-07 02:41:36] 2025-10-07 06:40:56,131 | INFO     | PanDA job id: 6833155733
[2025-10-07 02:41:36] 2025-10-07 06:40:56,131 | INFO     | task id: 46376905
[2025-10-07 02:41:36] 2025-10-07 06:40:56,132 | INFO     | errors: (none)
[2025-10-07 02:41:36] 2025-10-07 06:40:56,132 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 02:41:36] 2025-10-07 06:40:56,132 | INFO     | pilot state: finished 
[2025-10-07 02:41:36] 2025-10-07 06:40:56,132 | INFO     | transexitcode: 0
[2025-10-07 02:41:36] 2025-10-07 06:40:56,132 | INFO     | exeerrorcode: 0
[2025-10-07 02:41:36] 2025-10-07 06:40:56,132 | INFO     | exeerrordiag: 
[2025-10-07 02:41:36] 2025-10-07 06:40:56,133 | INFO     | exitcode: 0
[2025-10-07 02:41:36] 2025-10-07 06:40:56,133 | INFO     | exitmsg: OK
[2025-10-07 02:41:36] 2025-10-07 06:40:56,133 | INFO     | cpuconsumptiontime: 42156 s
[2025-10-07 02:41:36] 2025-10-07 06:40:56,133 | INFO     | nevents: 400
[2025-10-07 02:41:36] 2025-10-07 06:40:56,133 | INFO     | neventsw: 0
[2025-10-07 02:41:36] 2025-10-07 06:40:56,133 | INFO     | pid: 32509
[2025-10-07 02:41:36] 2025-10-07 06:40:56,133 | INFO     | pgrp: 32509
[2025-10-07 02:41:36] 2025-10-07 06:40:56,134 | INFO     | corecount: 12
[2025-10-07 02:41:36] 2025-10-07 06:40:56,134 | INFO     | event service: False
[2025-10-07 02:41:36] 2025-10-07 06:40:56,134 | INFO     | sizes: {0: 2348818, 1: 2348818, 5: 2349108, 11: 2349164, 3904: 2374946, 3905: 2374945, 3906: 2384127, 3910: 2384183, 3915: 2384377}
[2025-10-07 02:41:36] 2025-10-07 06:40:56,134 | INFO     | --------------------------------------------------
[2025-10-07 02:41:36] 2025-10-07 06:40:56,134 | INFO     | 
[2025-10-07 02:41:36] 2025-10-07 06:40:56,134 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-07 02:41:36] 2025-10-07 06:40:56,156 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,156 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,156 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,156 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,157 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,157 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,157 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,157 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,157 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,157 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,158 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,158 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,158 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,158 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,159 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,159 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,159 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 02:41:36] 2025-10-07 06:40:56,159 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,159 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 02:41:36] 2025-10-07 06:40:56,159 | INFO     | job 6833155733 has completed (purged errors)
[2025-10-07 02:41:36] 2025-10-07 06:40:56,160 | INFO     | overall cleanup function is called
[2025-10-07 02:41:36] 2025-10-07 06:40:57,165 | INFO     | --- collectZombieJob: --- 10, [32509]
[2025-10-07 02:41:36] 2025-10-07 06:40:57,165 | INFO     | zombie collector waiting for pid 32509
[2025-10-07 02:41:36] 2025-10-07 06:40:57,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 02:41:36] 2025-10-07 06:40:57,165 | INFO     | collected zombie processes
[2025-10-07 02:41:36] 2025-10-07 06:40:57,165 | INFO     | will attempt to kill all subprocesses of pid=32509
[2025-10-07 02:41:36] 2025-10-07 06:40:57,256 | INFO     | process IDs to be killed: [32509] (in reverse order)
[2025-10-07 02:41:36] 2025-10-07 06:40:57,307 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 02:41:36] 2025-10-07 06:40:57,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 02:41:36] 2025-10-07 06:40:57,311 | INFO     | did not find any defunct processes belonging to 32509
[2025-10-07 02:41:36] 2025-10-07 06:40:57,314 | INFO     | did not find any defunct processes belonging to 32509
[2025-10-07 02:41:36] 2025-10-07 06:40:57,314 | INFO     | ready for new job
[2025-10-07 02:41:36] 2025-10-07 06:40:57,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 02:41:36] 2025-10-07 06:40:57,316 | INFO     | ***************************************
[2025-10-07 02:41:36] 2025-10-07 06:40:57,316 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 02:41:36] 2025-10-07 06:40:57,316 | INFO     | ***************************************
[2025-10-07 02:41:36] 2025-10-07 06:40:57,316 | INFO     | 
[2025-10-07 02:41:36] 2025-10-07 06:40:57,317 | INFO     | architecture information:
[2025-10-07 02:41:36] 2025-10-07 06:40:57,317 | INFO     | executing command: cat /etc/os-release
[2025-10-07 02:41:36] 2025-10-07 06:40:57,332 | INFO     | cat /etc/os-release:
[2025-10-07 02:41:36] NAME="CentOS Linux"
[2025-10-07 02:41:36] VERSION="7 (Core)"
[2025-10-07 02:41:36] ID="centos"
[2025-10-07 02:41:36] ID_LIKE="rhel fedora"
[2025-10-07 02:41:36] VERSION_ID="7"
[2025-10-07 02:41:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 02:41:36] ANSI_COLOR="0;31"
[2025-10-07 02:41:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 02:41:36] HOME_URL="https://www.centos.org/"
[2025-10-07 02:41:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 02:41:36] 
[2025-10-07 02:41:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 02:41:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 02:41:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 02:41:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 02:41:36] 
[2025-10-07 02:41:36] 2025-10-07 06:40:57,332 | INFO     | ***************************************
[2025-10-07 02:41:36] 2025-10-07 06:40:57,835 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-07 02:41:36] 2025-10-07 06:40:57,852 | INFO     | sufficient remaining disk space (29387390976 B)
[2025-10-07 02:41:36] 2025-10-07 06:40:57,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 02:41:36] 2025-10-07 06:40:57,853 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 02:41:36] 2025-10-07 06:40:57,853 | INFO     | update_server=False
[2025-10-07 02:41:36] 2025-10-07 06:40:57,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 02:41:36] 2025-10-07 06:40:57,853 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 02:41:36] 2025-10-07 06:40:57,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:41:36] 2025-10-07 06:40:57,854 | INFO     | aborting loop
[2025-10-07 02:41:36] 2025-10-07 06:40:57,876 | INFO     | all data control threads have been joined
[2025-10-07 02:41:36] 2025-10-07 06:40:58,119 | INFO     | all payload control threads have been joined
[2025-10-07 02:41:36] 2025-10-07 06:40:58,480 | INFO     | all job control threads have been joined
[2025-10-07 02:41:36] 2025-10-07 06:40:58,858 | INFO     | [job] retrieve thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:58,859 | INFO     | [job] job monitor thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:58,882 | INFO     | [data] control thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:58,889 | INFO     | [payload] failed_post thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,085 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,121 | INFO     | [payload] control thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,416 | INFO     | [payload] validate_post thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,444 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,485 | INFO     | [job] control thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,643 | INFO     | [data] copytool_in thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,768 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,859 | INFO     | [data] copytool_out thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:40:59,921 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:41:00,275 | INFO     | [job] validate thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:41:00,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:41:36] 2025-10-07 06:41:01,143 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 02:41:36] 2025-10-07 06:41:01,710 | INFO     | [job] queue monitor thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:41:05,149 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 02:41:36] 2025-10-07 06:41:28,048 | INFO     | PID=26138 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 02:41:36] 2025-10-07 06:41:28,051 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 02:41:36] 2025-10-07 06:41:28,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 02:41:36] 2025-10-07 06:41:28,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 02:41:36] 2025-10-07 06:41:30,295 | INFO     | [monitor] cgroup control has ended
[2025-10-07 02:41:36] 2025-10-07 06:41:30,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834956519232)>', '<ExcThread(monitor, started 139834035255040)>']
[2025-10-07 02:41:36] 2025-10-07 06:41:31,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 02:41:36] 2025-10-07 06:41:31,068 | INFO     | [monitor] control thread has ended
[2025-10-07 02:41:36] 2025-10-07 06:41:35,876 | INFO     | all workflow threads have been joined
[2025-10-07 02:41:36] 2025-10-07 06:41:35,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 02:41:36] 2025-10-07 06:41:35,877 | INFO     | traces error code: 0
[2025-10-07 02:41:36] 2025-10-07 06:41:35,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 02:41:36] 2025-10-07 06:41:35,979 [wrapper] ==== pilot stdout END ====
[2025-10-07 02:41:36] 2025-10-07 06:41:35,983 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 02:41:36] 2025-10-07 06:41:35,987 [wrapper] pilotpid: 26138
[2025-10-07 02:41:36] 2025-10-07 06:41:35,991 [wrapper] Pilot exit status: 0
[2025-10-07 02:41:36] 2025-10-07 06:41:36,006 [wrapper] pandaids: 6833155733
[2025-10-07 02:41:36] 2025-10-07 06:41:36,047 [wrapper] cleanup supervisor_pilot 12552 26139
[2025-10-07 02:41:36] 2025-10-07 06:41:36,051 [wrapper] Test setup, not cleaning
[2025-10-07 02:41:36] 2025-10-07 06:41:36,055 [wrapper] apfmon messages muted
[2025-10-07 02:41:36] 2025-10-07 06:41:36,058 [wrapper] ==== wrapper stdout END ====
[2025-10-07 02:41:36] 2025-10-07 06:41:36,062 [wrapper] ==== wrapper stderr END ====
[2025-10-07 02:41:36]  *** Error codes and diagnostics ***
[2025-10-07 02:41:36]     "exeErrorCode": 0,
[2025-10-07 02:41:36]     "exeErrorDiag": "",
[2025-10-07 02:41:36]     "pilotErrorCode": 0,
[2025-10-07 02:41:36]     "pilotErrorDiag": "",
[2025-10-07 02:41:36]  *** Listing of results directory ***
[2025-10-07 02:41:36] total 391620
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 19:44 pilot3.tar.gz
[2025-10-07 02:41:36] -rwx------ 1 boincer umatlas     36292 Oct  6 19:45 runpilot2-wrapper.sh
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 19:45 queuedata.json
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas       100 Oct  7 01:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 02:41:36] -rwxr-xr-x 1 boincer umatlas      7986 Oct  7 01:35 run_atlas
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas       105 Oct  7 01:35 job.xml
[2025-10-07 02:41:36] -rw-r--r-- 2 boincer umatlas 215771186 Oct  7 01:35 EVNT.46376901._004546.pool.root.1
[2025-10-07 02:41:36] drwxrwx--x 2 boincer umatlas      4096 Oct  7 01:35 shared
[2025-10-07 02:41:36] -rw-r--r-- 2 boincer umatlas    565603 Oct  7 01:35 input.tar.gz
[2025-10-07 02:41:36] -rw-r--r-- 2 boincer umatlas     15120 Oct  7 01:35 start_atlas.sh
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas         0 Oct  7 01:35 boinc_lockfile
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas      2520 Oct  7 01:35 pandaJob.out
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas    974984 Oct  7 01:35 agis_schedconf.cvmfs.json
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas   1560401 Oct  7 01:35 agis_ddmendpoints.agis.ALL.json
[2025-10-07 02:41:36] drwx------ 4 boincer umatlas      4096 Oct  7 01:35 pilot3
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas      5952 Oct  7 02:38 init_data.xml
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas 179487304 Oct  7 02:40 HITS.46376905._122604.pool.root.1
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas       530 Oct  7 02:40 boinc_task_state.xml
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas      1050 Oct  7 02:40 memory_monitor_summary.json
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas    361747 Oct  7 02:40 log.46376905._122604.job.log.tgz.1
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas      7854 Oct  7 02:40 heartbeat.json
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas        95 Oct  7 02:41 pilot_heartbeat.json
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas      8192 Oct  7 02:41 boinc_mmap_file
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas        27 Oct  7 02:41 wrapper_checkpoint.txt
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas      4746 Oct  7 02:41 pilotlog.txt
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas    575106 Oct  7 02:41 log.46376905._122604.job.log.1
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas       357 Oct  7 02:41 output.list
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas       620 Oct  7 02:41 runtime_log
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas    952320 Oct  7 02:41 result.tar.gz
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas      8705 Oct  7 02:41 runtime_log.err
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas       659 Oct  7 02:41 4MDLDmI49P8n9Rq4apOajLDm4fhM0noT9bVof3QYDmDQKMDm8vd6Jm.diag
[2025-10-07 02:41:36] -rw-r--r-- 1 boincer umatlas     22153 Oct  7 02:41 stderr.txt
[2025-10-07 02:41:36] HITS file was successfully produced:
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas 179487304 Oct  7 02:40 shared/HITS.pool.root.1
[2025-10-07 02:41:36]  *** Contents of shared directory: ***
[2025-10-07 02:41:36] total 387508
[2025-10-07 02:41:36] -rw-r--r-- 2 boincer umatlas 215771186 Oct  7 01:35 ATLAS.root_0
[2025-10-07 02:41:36] -rw-r--r-- 2 boincer umatlas    565603 Oct  7 01:35 input.tar.gz
[2025-10-07 02:41:36] -rw-r--r-- 2 boincer umatlas     15120 Oct  7 01:35 start_atlas.sh
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas 179487304 Oct  7 02:40 HITS.pool.root.1
[2025-10-07 02:41:36] -rw------- 1 boincer umatlas    952320 Oct  7 02:41 result.tar.gz
02:41:37 (22082): run_atlas exited; CPU time 42133.482615
02:41:37 (22082): called boinc_finish(0)

</stderr_txt>
]]>

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