Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:28:28 (15589): wrapper (7.7.26015): starting
13:28:28 (15589): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 13:28:28] Arguments: --nthreads 8
[2025-10-07 13:28:28] Threads: 8
[2025-10-07 13:28:28] Checking for CVMFS
[2025-10-07 13:28:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 13:28:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 13:28:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 13:28:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 13:28:30] 2.11.2.0 5153 100115 113944 151434 2 211 22030182 25165825 4632 130560 0 33678802 99.911 14702618 2293 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-07 13:28:30] CVMFS is ok
[2025-10-07 13:28:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 13:28:30] Checking for apptainer binary...
[2025-10-07 13:28:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 13:28:30] Running /usr/bin/apptainer --version
[2025-10-07 13:28:30] apptainer version 1.3.2-1.el7
[2025-10-07 13:28:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 13:28:46] cg-vwn274.simple-grid.lan
[2025-10-07 13:28:46] apptainer works
[2025-10-07 13:28:46] Set ATHENA_PROC_NUMBER=8
[2025-10-07 13:28:46] Set ATHENA_CORE_NUMBER=8
[2025-10-07 13:28:46] Starting ATLAS job with PandaID=6832858498
[2025-10-07 13:28:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 17:22:55]  *** The last 200 lines of the pilot log: ***
[2025-10-07 17:22:55] 2025-10-07 15:22:10,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,294 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 17:22:55] 2025-10-07 15:22:11,295 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-07 17:22:55] 2025-10-07 15:22:11,297 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6832858498/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,298 | INFO     | extracted standard info from prmon json
[2025-10-07 17:22:55] 2025-10-07 15:22:11,298 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 17:22:55] 2025-10-07 15:22:11,298 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 17:22:55] 2025-10-07 15:22:11,298 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 17:22:55] 2025-10-07 15:22:11,298 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 17:22:55] 2025-10-07 15:22:11,303 | INFO     | fitting pss+swap vs Time
[2025-10-07 17:22:55] 2025-10-07 15:22:11,304 | INFO     | sum of square deviations: 3081657780.0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,310 | INFO     | sum of deviations: -14287841265.999992
[2025-10-07 17:22:55] 2025-10-07 15:22:11,310 | INFO     | mean x: 1759843751.0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,310 | INFO     | mean y: 2618892.3674418605
[2025-10-07 17:22:55] 2025-10-07 15:22:11,310 | INFO     | -- intersect: 8161983092.518835
[2025-10-07 17:22:55] 2025-10-07 15:22:11,310 | INFO     | intersect: 8161983092.518835
[2025-10-07 17:22:55] 2025-10-07 15:22:11,311 | INFO     | chi2: 4.971797777394721
[2025-10-07 17:22:55] 2025-10-07 15:22:11,311 | INFO     | sum of square deviations: 2871616632.5
[2025-10-07 17:22:55] 2025-10-07 15:22:11,313 | INFO     | sum of deviations: 4919389103.000042
[2025-10-07 17:22:55] 2025-10-07 15:22:11,313 | INFO     | mean x: 1759843598.5
[2025-10-07 17:22:55] 2025-10-07 15:22:11,313 | INFO     | mean y: 2632634.6666666665
[2025-10-07 17:22:55] 2025-10-07 15:22:11,313 | INFO     | -- intersect: -3012169314.682776
[2025-10-07 17:22:55] 2025-10-07 15:22:11,314 | INFO     | intersect: -3012169314.682776
[2025-10-07 17:22:55] 2025-10-07 15:22:11,314 | INFO     | chi2: 4.154864232273821
[2025-10-07 17:22:55] 2025-10-07 15:22:11,314 | INFO     | current chi2=4.154864232273821 (change=16.431351026287754 %)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,314 | INFO     | right removable region: 209
[2025-10-07 17:22:55] 2025-10-07 15:22:11,315 | INFO     | sum of square deviations: 2871616632.5
[2025-10-07 17:22:55] 2025-10-07 15:22:11,316 | INFO     | sum of deviations: -82901695834.0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,317 | INFO     | mean x: 1759843903.5
[2025-10-07 17:22:55] 2025-10-07 15:22:11,317 | INFO     | mean y: 2668565.9904761906
[2025-10-07 17:22:55] 2025-10-07 15:22:11,317 | INFO     | -- intersect: 50808212158.43805
[2025-10-07 17:22:55] 2025-10-07 15:22:11,317 | INFO     | intersect: 50808212158.43805
[2025-10-07 17:22:55] 2025-10-07 15:22:11,317 | INFO     | chi2: 1.3011425380672956
[2025-10-07 17:22:55] 2025-10-07 15:22:11,317 | INFO     | current chi2=1.3011425380672956 (change=73.82953618944032 %)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,318 | INFO     | sum of square deviations: 2671343110.0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,327 | INFO     | sum of deviations: -95376905569.00003
[2025-10-07 17:22:55] 2025-10-07 15:22:11,327 | INFO     | mean x: 1759844056.0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,327 | INFO     | mean y: 2678014.556097561
[2025-10-07 17:22:55] 2025-10-07 15:22:11,327 | INFO     | -- intersect: 62835670046.52238
[2025-10-07 17:22:55] 2025-10-07 15:22:11,328 | INFO     | intersect: 62835670046.52238
[2025-10-07 17:22:55] 2025-10-07 15:22:11,328 | INFO     | chi2: 1.0702362850692766
[2025-10-07 17:22:55] 2025-10-07 15:22:11,328 | INFO     | current chi2=1.0702362850692766 (change=17.74642256650873 %)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,328 | INFO     | left removable region: 20
[2025-10-07 17:22:55] 2025-10-07 15:22:11,329 | INFO     | sum of square deviations: 2093397390.0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,330 | INFO     | sum of deviations: -71553918111.00003
[2025-10-07 17:22:55] 2025-10-07 15:22:11,330 | INFO     | mean x: 1759844178.0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,330 | INFO     | mean y: 2692628.6666666665
[2025-10-07 17:22:55] 2025-10-07 15:22:11,330 | INFO     | -- intersect: 60155507761.74188
[2025-10-07 17:22:55] 2025-10-07 15:22:11,331 | INFO     | intersect: 60155507761.74188
[2025-10-07 17:22:55] 2025-10-07 15:22:11,331 | INFO     | chi2: 0.1783419068933392
[2025-10-07 17:22:55] 2025-10-07 15:22:11,331 | INFO     | -- intersect: 60155507761.74188
[2025-10-07 17:22:55] 2025-10-07 15:22:11,331 | INFO     | current memory leak: -34.18 B/s (using 189 data points, chi2=0.18)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,332 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,332 | INFO     | ..............................
[2025-10-07 17:22:55] 2025-10-07 15:22:11,332 | INFO     | . Timing measurements:
[2025-10-07 17:22:55] 2025-10-07 15:22:11,332 | INFO     | . get job = 0 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,333 | INFO     | . initial setup = 7 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,333 | INFO     | . payload setup = 141 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,333 | INFO     | . stage-in = 0 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,333 | INFO     | . payload execution = 13264 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,333 | INFO     | . stage-out = 107 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,333 | INFO     | . log creation = 1 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,333 | INFO     | ..............................
[2025-10-07 17:22:55] 2025-10-07 15:22:11,495 | INFO     | 
[2025-10-07 17:22:55] 2025-10-07 15:22:11,495 | INFO     | job summary report
[2025-10-07 17:22:55] 2025-10-07 15:22:11,495 | INFO     | --------------------------------------------------
[2025-10-07 17:22:55] 2025-10-07 15:22:11,495 | INFO     | PanDA job id: 6832858498
[2025-10-07 17:22:55] 2025-10-07 15:22:11,495 | INFO     | task id: 46376905
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | errors: (none)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | pilot state: finished 
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | transexitcode: 0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | exeerrorcode: 0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | exeerrordiag: 
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | exitcode: 0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | exitmsg: OK
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | cpuconsumptiontime: 50101 s
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | nevents: 400
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | neventsw: 0
[2025-10-07 17:22:55] 2025-10-07 15:22:11,496 | INFO     | pid: 25958
[2025-10-07 17:22:55] 2025-10-07 15:22:11,497 | INFO     | pgrp: 25958
[2025-10-07 17:22:55] 2025-10-07 15:22:11,497 | INFO     | corecount: 8
[2025-10-07 17:22:55] 2025-10-07 15:22:11,497 | INFO     | event service: False
[2025-10-07 17:22:55] 2025-10-07 15:22:11,497 | INFO     | sizes: {0: 2348539, 1: 2348794, 2: 2348794, 12: 2348822, 23: 2348850, 34: 2348878, 44: 2349034, 55: 2349062, 66: 2349090, 77: 2349118, 87: 2349174, 93: 2349744, 98
[2025-10-07 17:22:55] 2025-10-07 15:22:11,497 | INFO     | --------------------------------------------------
[2025-10-07 17:22:55] 2025-10-07 15:22:11,497 | INFO     | 
[2025-10-07 17:22:55] 2025-10-07 15:22:11,497 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-10-07 17:22:55] 2025-10-07 15:22:11,830 | INFO     | time since job start (13788s) is within the limit (172800.0s)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,968 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 17:22:55] 2025-10-07 15:22:11,969 | INFO     | job 6832858498 has completed (purged errors)
[2025-10-07 17:22:55] 2025-10-07 15:22:11,969 | INFO     | overall cleanup function is called
[2025-10-07 17:22:55] 2025-10-07 15:22:12,978 | INFO     | --- collectZombieJob: --- 10, [25958]
[2025-10-07 17:22:55] 2025-10-07 15:22:12,978 | INFO     | zombie collector waiting for pid 25958
[2025-10-07 17:22:55] 2025-10-07 15:22:12,978 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 17:22:55] 2025-10-07 15:22:12,979 | INFO     | collected zombie processes
[2025-10-07 17:22:55] 2025-10-07 15:22:12,979 | INFO     | will attempt to kill all subprocesses of pid=25958
[2025-10-07 17:22:55] 2025-10-07 15:22:13,081 | INFO     | process IDs to be killed: [25958] (in reverse order)
[2025-10-07 17:22:55] 2025-10-07 15:22:13,726 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 17:22:55] 2025-10-07 15:22:13,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 17:22:55] 2025-10-07 15:22:13,730 | INFO     | did not find any defunct processes belonging to 25958
[2025-10-07 17:22:55] 2025-10-07 15:22:13,734 | INFO     | did not find any defunct processes belonging to 25958
[2025-10-07 17:22:55] 2025-10-07 15:22:13,734 | INFO     | ready for new job
[2025-10-07 17:22:55] 2025-10-07 15:22:13,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 17:22:55] 2025-10-07 15:22:13,736 | INFO     | ***************************************
[2025-10-07 17:22:55] 2025-10-07 15:22:13,736 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 17:22:55] 2025-10-07 15:22:13,737 | INFO     | ***************************************
[2025-10-07 17:22:55] 2025-10-07 15:22:13,737 | INFO     | 
[2025-10-07 17:22:55] 2025-10-07 15:22:13,737 | INFO     | pilot is running in a VM
[2025-10-07 17:22:55] 2025-10-07 15:22:13,737 | INFO     | architecture information:
[2025-10-07 17:22:55] 2025-10-07 15:22:13,752 | INFO     | executing command: cat /etc/os-release
[2025-10-07 17:22:55] 2025-10-07 15:22:14,004 | INFO     | cat /etc/os-release:
[2025-10-07 17:22:55] NAME="CentOS Linux"
[2025-10-07 17:22:55] VERSION="7 (Core)"
[2025-10-07 17:22:55] ID="centos"
[2025-10-07 17:22:55] ID_LIKE="rhel fedora"
[2025-10-07 17:22:55] VERSION_ID="7"
[2025-10-07 17:22:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 17:22:55] ANSI_COLOR="0;31"
[2025-10-07 17:22:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 17:22:55] HOME_URL="https://www.centos.org/"
[2025-10-07 17:22:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 17:22:55] 
[2025-10-07 17:22:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 17:22:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 17:22:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 17:22:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 17:22:55] 
[2025-10-07 17:22:55] 2025-10-07 15:22:14,004 | INFO     | ***************************************
[2025-10-07 17:22:55] 2025-10-07 15:22:14,507 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-10-07 17:22:55] 2025-10-07 15:22:14,787 | INFO     | sufficient remaining disk space (496164143104 B)
[2025-10-07 17:22:55] 2025-10-07 15:22:14,788 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 17:22:55] 2025-10-07 15:22:14,788 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 17:22:55] 2025-10-07 15:22:14,788 | INFO     | update_server=False
[2025-10-07 17:22:55] 2025-10-07 15:22:14,788 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 17:22:55] 2025-10-07 15:22:14,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 17:22:55] 2025-10-07 15:22:14,789 | INFO     | aborting loop
[2025-10-07 17:22:55] 2025-10-07 15:22:14,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 17:22:55] 2025-10-07 15:22:15,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 17:22:55] 2025-10-07 15:22:15,710 | INFO     | all data control threads have been joined
[2025-10-07 17:22:55] 2025-10-07 15:22:15,762 | INFO     | all payload control threads have been joined
[2025-10-07 17:22:55] 2025-10-07 15:22:15,794 | INFO     | [job] retrieve thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:15,795 | INFO     | [job] job monitor thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:15,802 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:15,858 | INFO     | all job control threads have been joined
[2025-10-07 17:22:55] 2025-10-07 15:22:15,972 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,311 | INFO     | [job] validate thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,317 | INFO     | [payload] failed_post thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,386 | INFO     | [payload] validate_post thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,513 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 17:22:55] 2025-10-07 15:22:16,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,716 | INFO     | [data] control thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,768 | INFO     | [payload] control thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,781 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,802 | INFO     | [data] copytool_out thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:16,864 | INFO     | [job] control thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:17,252 | INFO     | [data] copytool_in thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:17,519 | INFO     | [job] queue monitor thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:19,710 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 17:22:55] 2025-10-07 15:22:45,034 | INFO     | PID=19395 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 17:22:55] 2025-10-07 15:22:45,035 | INFO     | .. there are 9 such processes running
[2025-10-07 17:22:55] 2025-10-07 15:22:45,036 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 17:22:55] 2025-10-07 15:22:45,036 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 17:22:55] 2025-10-07 15:22:45,036 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 17:22:55] 2025-10-07 15:22:46,197 | INFO     | [monitor] cgroup control has ended
[2025-10-07 17:22:55] 2025-10-07 15:22:46,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140037791237952)>', '<ExcThread(monitor, started 140037115070208)>']
[2025-10-07 17:22:55] 2025-10-07 15:22:47,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 17:22:55] 2025-10-07 15:22:47,048 | INFO     | [monitor] control thread has ended
[2025-10-07 17:22:55] 2025-10-07 15:22:51,314 | INFO     | all workflow threads have been joined
[2025-10-07 17:22:55] 2025-10-07 15:22:51,314 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 17:22:55] 2025-10-07 15:22:51,315 | INFO     | traces error code: 0
[2025-10-07 17:22:55] 2025-10-07 15:22:51,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 17:22:55] 2025-10-07 15:22:51,649 [wrapper] ==== pilot stdout END ====
[2025-10-07 17:22:55] 2025-10-07 15:22:51,749 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 17:22:55] 2025-10-07 15:22:51,855 [wrapper] pilotpid: 19395
[2025-10-07 17:22:55] 2025-10-07 15:22:51,961 [wrapper] Pilot exit status: 0
[2025-10-07 17:22:55] 2025-10-07 15:22:52,373 [wrapper] pandaids: 6832858498
[2025-10-07 17:22:55] 2025-10-07 15:22:52,746 [wrapper] cleanup supervisor_pilot 17351 19396
[2025-10-07 17:22:55] 2025-10-07 15:22:52,814 [wrapper] Test setup, not cleaning
[2025-10-07 17:22:55] 2025-10-07 15:22:52,863 [wrapper] apfmon messages muted
[2025-10-07 17:22:55] 2025-10-07 15:22:52,912 [wrapper] ==== wrapper stdout END ====
[2025-10-07 17:22:55] 2025-10-07 15:22:53,015 [wrapper] ==== wrapper stderr END ====
[2025-10-07 17:22:55]  *** Error codes and diagnostics ***
[2025-10-07 17:22:55]     "exeErrorCode": 0,
[2025-10-07 17:22:55]     "exeErrorDiag": "",
[2025-10-07 17:22:55]     "pilotErrorCode": 0,
[2025-10-07 17:22:55]     "pilotErrorDiag": "",
[2025-10-07 17:22:55]  *** Listing of results directory ***
[2025-10-07 17:22:55] total 400480
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc    552446 Oct  6 17:24 pilot3.tar.gz
[2025-10-07 17:22:55] -rwx------. 1 boinc boinc     36292 Oct  6 17:38 runpilot2-wrapper.sh
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc      5112 Oct  6 17:38 queuedata.json
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc       100 Oct  7 13:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 17:22:55] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 13:28 run_atlas
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc       105 Oct  7 13:28 job.xml
[2025-10-07 17:22:55] -rw-r--r--. 2 boinc boinc 214669899 Oct  7 13:28 EVNT.46376901._002653.pool.root.1
[2025-10-07 17:22:55] -rw-r--r--. 2 boinc boinc     15120 Oct  7 13:28 start_atlas.sh
[2025-10-07 17:22:55] drwxrwx--x. 2 boinc boinc        68 Oct  7 13:28 shared
[2025-10-07 17:22:55] -rw-r--r--. 2 boinc boinc    565603 Oct  7 13:28 input.tar.gz
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc         0 Oct  7 13:28 boinc_lockfile
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc      6390 Oct  7 13:28 init_data.xml
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc      2519 Oct  7 13:28 pandaJob.out
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc    975010 Oct  7 13:32 agis_schedconf.cvmfs.json
[2025-10-07 17:22:55] drwx------. 4 boinc boinc      4096 Oct  7 13:32 pilot3
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc 186980369 Oct  7 17:17 HITS.46376905._114161.pool.root.1
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc       531 Oct  7 17:17 boinc_task_state.xml
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc      1013 Oct  7 17:18 memory_monitor_summary.json
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc   1560401 Oct  7 17:19 agis_ddmendpoints.agis.ALL.json
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc    445593 Oct  7 17:19 log.46376905._114161.job.log.tgz.1
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc      7785 Oct  7 17:22 heartbeat.json
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc        95 Oct  7 17:22 pilot_heartbeat.json
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc        28 Oct  7 17:22 wrapper_checkpoint.txt
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc      8192 Oct  7 17:22 boinc_mmap_file
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc      4884 Oct  7 17:22 pilotlog.txt
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc   1835118 Oct  7 17:22 log.46376905._114161.job.log.1
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc       357 Oct  7 17:22 output.list
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc       620 Oct  7 17:22 runtime_log
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc   2304000 Oct  7 17:22 result.tar.gz
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc      8703 Oct  7 17:22 runtime_log.err
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc       656 Oct  7 17:22 OGBNDmXT2P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7tTNDmrEaLdm.diag
[2025-10-07 17:22:55] -rw-r--r--. 1 boinc boinc     20814 Oct  7 17:22 stderr.txt
[2025-10-07 17:22:55] HITS file was successfully produced:
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc 186980369 Oct  7 17:17 shared/HITS.pool.root.1
[2025-10-07 17:22:55]  *** Contents of shared directory: ***
[2025-10-07 17:22:55] total 395064
[2025-10-07 17:22:55] -rw-r--r--. 2 boinc boinc 214669899 Oct  7 13:28 ATLAS.root_0
[2025-10-07 17:22:55] -rw-r--r--. 2 boinc boinc     15120 Oct  7 13:28 start_atlas.sh
[2025-10-07 17:22:55] -rw-r--r--. 2 boinc boinc    565603 Oct  7 13:28 input.tar.gz
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc 186980369 Oct  7 17:17 HITS.pool.root.1
[2025-10-07 17:22:55] -rw-------. 1 boinc boinc   2304000 Oct  7 17:22 result.tar.gz
17:22:56 (15589): run_atlas exited; CPU time 50293.721842
17:22:56 (15589): called boinc_finish(0)

</stderr_txt>
]]>

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