Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:29:05 (2366980): wrapper (7.7.26015): starting
20:29:05 (2366980): wrapper: running run_atlas (--nthreads 12)
[2025-10-06 20:29:05] Arguments: --nthreads 12
[2025-10-06 20:29:05] Threads: 12
[2025-10-06 20:29:05] Checking for CVMFS
[2025-10-06 20:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 20:29:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 20:29:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 20:29:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 20:29:06] 2.11.5.0 2733 23756 208548 151422 3 363 39670036 45568000 18769 130560 0 213707777 99.868 93166566 23101 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-06 20:29:06] CVMFS is ok
[2025-10-06 20:29:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 20:29:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 20:29:06] Further information can be found at the LHC@home message board.
[2025-10-06 20:29:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 20:29:06] Checking for apptainer binary...
[2025-10-06 20:29:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 20:29:06] Running /usr/bin/apptainer --version
[2025-10-06 20:29:06] apptainer version 1.4.1-1.el9
[2025-10-06 20:29:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 20:29:07] wns0033.triumf.lcg
[2025-10-06 20:29:07] apptainer works
[2025-10-06 20:29:07] Set ATHENA_PROC_NUMBER=12
[2025-10-06 20:29:07] Set ATHENA_CORE_NUMBER=12
[2025-10-06 20:29:07] Starting ATLAS job with PandaID=6833155445
[2025-10-06 20:29:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 20:33:37]  *** The last 200 lines of the pilot log: ***
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | could have reported an average CPU frequency of 2741 MHz (4 samples)
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | ..............................
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | . Timing measurements:
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . get job = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . initial setup = 3 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . payload setup = 11 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . stage-in = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . payload execution = 31 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . stage-out = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . log creation = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | ..............................
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 20:33:37] 2025-10-07 03:33:03,027 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6833155445/pilotlog.txt
[2025-10-06 20:33:37] 2025-10-07 03:33:03,113 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-06 20:33:37] - Log from pilotlog.txt -
[2025-10-06 20:33:37] 2025-10-07 03:33:02,995 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6833155445/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 20:33:37] 2025-10-07 03:33:02,995 | INFO     | extracted standard info from prmon json
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | WARNING  | wrong length of table data, x=[1759807815.0], y=[1511.0] (must be same and length>=4)
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | could have reported an average CPU frequency of 2741 MHz (4 samples)
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | ..............................
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | . Timing measurements:
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . get job = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . initial setup = 3 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . payload setup = 11 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . stage-in = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . payload execution = 31 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . stage-out = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . log creation = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | ..............................
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 20:33:37] 2025-10-07 03:33:03,027 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6833155445/pilotlog.txt
[2025-10-06 20:33:37] 2025-10-07 03:33:03,114 | WARNING  | 
[2025-10-06 20:33:37] [begin log extracts]
[2025-10-06 20:33:37] - Log from pilotlog.txt -
[2025-10-06 20:33:37] 2025-10-07 03:33:02,995 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6833155445/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 20:33:37] 2025-10-07 03:33:02,995 | INFO     | extracted standard info from prmon json
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 20:33:37] 2025-10-07 03:33:02,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | WARNING  | wrong length of table data, x=[1759807815.0], y=[1511.0] (must be same and length>=4)
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | could have reported an average CPU frequency of 2741 MHz (4 samples)
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | ..............................
[2025-10-06 20:33:37] 2025-10-07 03:33:02,997 | INFO     | . Timing measurements:
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . get job = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . initial setup = 3 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . payload setup = 11 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . stage-in = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . payload execution = 31 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . stage-out = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | . log creation = 0 s
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | ..............................
[2025-10-06 20:33:37] 2025-10-07 03:33:02,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 20:33:37] 2025-10-07 03:33:03,027 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6833155445/pilotlog.txt
[2025-10-06 20:33:37] [end log extracts]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,114 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-06 20:33:37] 2025-10-07 03:33:03,115 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-06 20:33:37] 2025-10-07 03:33:03,390 | INFO     | time since job start (216s) is within the limit (172800.0s)
[2025-10-06 20:33:37] 2025-10-07 03:33:03,572 | INFO     | 
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | job summary report
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | --------------------------------------------------
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | PanDA job id: 6833155445
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | task id: 46376905
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-06 20:30:24,083 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | pilot state: failed 
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | transexitcode: 65
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | exeerrorcode: 65
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | exitcode: 65
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | cpuconsumptiontime: 17 s
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | nevents: 0
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | neventsw: 0
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | pid: 2377275
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | pgrp: 2377275
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | corecount: 12
[2025-10-06 20:33:37] 2025-10-07 03:33:03,573 | INFO     | event service: False
[2025-10-06 20:33:37] 2025-10-07 03:33:03,574 | INFO     | sizes: {0: 2348539, 1: 2348623, 2: 2348822, 9: 2349084, 13: 2349112, 46: 2372539, 47: 2376831, 50: 2376887, 197: 2377113}
[2025-10-06 20:33:37] 2025-10-07 03:33:03,574 | INFO     | --------------------------------------------------
[2025-10-06 20:33:37] 2025-10-07 03:33:03,574 | INFO     | 
[2025-10-06 20:33:37] 2025-10-07 03:33:03,574 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | job 6833155445 has completed (purged errors)
[2025-10-06 20:33:37] 2025-10-07 03:33:03,640 | INFO     | overall cleanup function is called
[2025-10-06 20:33:37] 2025-10-07 03:33:04,647 | INFO     | --- collectZombieJob: --- 10, [2377275]
[2025-10-06 20:33:37] 2025-10-07 03:33:04,647 | INFO     | zombie collector waiting for pid 2377275
[2025-10-06 20:33:37] 2025-10-07 03:33:04,647 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 20:33:37] 2025-10-07 03:33:04,647 | INFO     | collected zombie processes
[2025-10-06 20:33:37] 2025-10-07 03:33:04,647 | INFO     | will attempt to kill all subprocesses of pid=2377275
[2025-10-06 20:33:37] 2025-10-07 03:33:04,825 | INFO     | process IDs to be killed: [2377275] (in reverse order)
[2025-10-06 20:33:37] 2025-10-07 03:33:05,141 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 20:33:37] 2025-10-07 03:33:05,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 20:33:37] 2025-10-07 03:33:05,223 | INFO     | did not find any defunct processes belonging to 2377275
[2025-10-06 20:33:37] 2025-10-07 03:33:05,278 | INFO     | did not find any defunct processes belonging to 2377275
[2025-10-06 20:33:37] 2025-10-07 03:33:05,279 | INFO     | ready for new job
[2025-10-06 20:33:37] 2025-10-07 03:33:05,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 20:33:37] 2025-10-07 03:33:05,280 | INFO     | ***************************************
[2025-10-06 20:33:37] 2025-10-07 03:33:05,280 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 20:33:37] 2025-10-07 03:33:05,280 | INFO     | ***************************************
[2025-10-06 20:33:37] 2025-10-07 03:33:05,280 | INFO     | 
[2025-10-06 20:33:37] 2025-10-07 03:33:05,282 | INFO     | architecture information:
[2025-10-06 20:33:37] 2025-10-07 03:33:05,306 | INFO     | executing command: cat /etc/os-release
[2025-10-06 20:33:37] 2025-10-07 03:33:05,372 | INFO     | cat /etc/os-release:
[2025-10-06 20:33:37] NAME="CentOS Linux"
[2025-10-06 20:33:37] VERSION="7 (Core)"
[2025-10-06 20:33:37] ID="centos"
[2025-10-06 20:33:37] ID_LIKE="rhel fedora"
[2025-10-06 20:33:37] VERSION_ID="7"
[2025-10-06 20:33:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 20:33:37] ANSI_COLOR="0;31"
[2025-10-06 20:33:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 20:33:37] HOME_URL="https://www.centos.org/"
[2025-10-06 20:33:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 20:33:37] 
[2025-10-06 20:33:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 20:33:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 20:33:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 20:33:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 20:33:37] 
[2025-10-06 20:33:37] 2025-10-07 03:33:05,373 | INFO     | ***************************************
[2025-10-06 20:33:37] 2025-10-07 03:33:05,876 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-06 20:33:37] 2025-10-07 03:33:06,037 | INFO     | sufficient remaining disk space (2109869129728 B)
[2025-10-06 20:33:37] 2025-10-07 03:33:06,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 20:33:37] 2025-10-07 03:33:06,038 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 20:33:37] 2025-10-07 03:33:06,038 | INFO     | update_server=False
[2025-10-06 20:33:37] 2025-10-07 03:33:06,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 20:33:37] 2025-10-07 03:33:06,360 | INFO     | all payload control threads have been joined
[2025-10-06 20:33:37] 2025-10-07 03:33:06,500 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 20:33:37] 2025-10-07 03:33:06,500 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 20:33:37] 2025-10-07 03:33:06,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:33:37] 2025-10-07 03:33:06,501 | INFO     | will abort loop
[2025-10-06 20:33:37] 2025-10-07 03:33:06,616 | INFO     | all job control threads have been joined
[2025-10-06 20:33:37] 2025-10-07 03:33:06,833 | INFO     | all data control threads have been joined
[2025-10-06 20:33:37] 2025-10-07 03:33:07,044 | INFO     | [job] retrieve thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,348 | INFO     | [payload] failed_post thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 20:33:37] 2025-10-07 03:33:07,366 | INFO     | [payload] control thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,441 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 20:33:37] 2025-10-07 03:33:07,506 | INFO     | [job] job monitor thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,622 | INFO     | [job] control thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,630 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,839 | INFO     | [data] control thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:07,954 | INFO     | [payload] validate_post thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:08,014 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:08,206 | INFO     | [data] copytool_in thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:08,319 | INFO     | [job] validate thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:08,371 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:08,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:33:37] 2025-10-07 03:33:09,358 | INFO     | [data] copytool_out thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:09,592 | INFO     | [job] queue monitor thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:11,463 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 20:33:37] 2025-10-07 03:33:26,833 | INFO     | [monitor] cgroup control has ended
[2025-10-06 20:33:37] 2025-10-07 03:33:27,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718396319552)>', '<ExcThread(monitor, started 140717993211648)>']
[2025-10-06 20:33:37] 2025-10-07 03:33:32,541 | INFO     | all workflow threads have been joined
[2025-10-06 20:33:37] 2025-10-07 03:33:32,541 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 20:33:37] 2025-10-07 03:33:32,542 | INFO     | traces error code: 0
[2025-10-06 20:33:37] 2025-10-07 03:33:32,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 20:33:37] 2025-10-07 03:33:36,750 | INFO     | PID=2370639 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 20:33:37] 2025-10-07 03:33:36,750 | INFO     | .. there are 27 such processes running
[2025-10-06 20:33:37] 2025-10-07 03:33:36,750 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 20:33:37] 2025-10-07 03:33:36,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 20:33:37] 2025-10-07 03:33:36,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 20:33:37] 2025-10-07 03:33:36,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 20:33:37] 2025-10-07 03:33:36,751 | CRITICAL | thread 'MainThread' is not alive
[2025-10-06 20:33:37] 2025-10-07 03:33:36,751 | INFO     | [monitor] control thread has ended
[2025-10-06 20:33:37] 2025-10-07 03:33:36,880 [wrapper] ==== pilot stdout END ====
[2025-10-06 20:33:37] 2025-10-07 03:33:36,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 20:33:37] 2025-10-07 03:33:36,911 [wrapper] pilotpid: 2370639
[2025-10-06 20:33:37] 2025-10-07 03:33:37,022 [wrapper] Pilot exit status: 0
[2025-10-06 20:33:37] 2025-10-07 03:33:37,055 [wrapper] pandaids: 6833155445
[2025-10-06 20:33:37] 2025-10-07 03:33:37,133 [wrapper] cleanup supervisor_pilot 2370645 2370640
[2025-10-06 20:33:37] 2025-10-07 03:33:37,138 [wrapper] Test setup, not cleaning
[2025-10-06 20:33:37] 2025-10-07 03:33:37,155 [wrapper] apfmon messages muted
[2025-10-06 20:33:37] 2025-10-07 03:33:37,170 [wrapper] ==== wrapper stdout END ====
[2025-10-06 20:33:37] 2025-10-07 03:33:37,195 [wrapper] ==== wrapper stderr END ====
[2025-10-06 20:33:37]  *** Error codes and diagnostics ***
[2025-10-06 20:33:37]     "exeErrorCode": 65,
[2025-10-06 20:33:37]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 20:33:37]     "pilotErrorCode": 1305,
[2025-10-06 20:33:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 20:33:37]  *** Listing of results directory ***
[2025-10-06 20:33:37] total 214804
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc    552446 Oct  6 16:19 pilot3.tar.gz
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc      5112 Oct  6 16:29 queuedata.json
[2025-10-06 20:33:37] -rwx------. 1 boinc boinc     36292 Oct  6 16:29 runpilot2-wrapper.sh
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc       100 Oct  6 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 20:33:37] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 20:29 run_atlas
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc       105 Oct  6 20:29 job.xml
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc      6593 Oct  6 20:29 init_data.xml
[2025-10-06 20:33:37] -rw-r--r--. 2 boinc boinc 215873623 Oct  6 20:29 EVNT.46376901._004535.pool.root.1
[2025-10-06 20:33:37] -rw-r--r--. 2 boinc boinc     15120 Oct  6 20:29 start_atlas.sh
[2025-10-06 20:33:37] drwxrwx--x. 2 boinc boinc      4096 Oct  6 20:29 shared
[2025-10-06 20:33:37] -rw-r--r--. 2 boinc boinc    565604 Oct  6 20:29 input.tar.gz
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc         0 Oct  6 20:29 boinc_lockfile
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc      2520 Oct  6 20:29 pandaJob.out
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc    974984 Oct  6 20:29 agis_schedconf.cvmfs.json
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc   1560401 Oct  6 20:29 agis_ddmendpoints.agis.ALL.json
[2025-10-06 20:33:37] drwx------. 4 boinc boinc      4096 Oct  6 20:29 pilot3
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc       971 Oct  6 20:30 memory_monitor_summary.json
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc     21510 Oct  6 20:30 log.46376905._122341.job.log.tgz.1
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc      8418 Oct  6 20:33 heartbeat.json
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc       523 Oct  6 20:33 boinc_task_state.xml
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc      8192 Oct  6 20:33 boinc_mmap_file
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc        22 Oct  6 20:33 wrapper_checkpoint.txt
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc       893 Oct  6 20:33 pilotlog.txt
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc        95 Oct  6 20:33 pilot_heartbeat.json
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc     90092 Oct  6 20:33 log.46376905._122341.job.log.1
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc       188 Oct  6 20:33 output.list
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc       620 Oct  6 20:33 runtime_log
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc    133120 Oct  6 20:33 result.tar.gz
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc      8528 Oct  6 20:33 runtime_log.err
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc       645 Oct  6 20:33 QO6NDmJp9P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeAVNDmwVuVCn.diag
[2025-10-06 20:33:37] -rw-r--r--. 1 boinc boinc      2139 Oct  6 20:33 stderr.txt
[2025-10-06 20:33:37] No HITS result produced
[2025-10-06 20:33:37]  *** Contents of shared directory: ***
[2025-10-06 20:33:37] total 211520
[2025-10-06 20:33:37] -rw-r--r--. 2 boinc boinc 215873623 Oct  6 20:29 ATLAS.root_0
[2025-10-06 20:33:37] -rw-r--r--. 2 boinc boinc     15120 Oct  6 20:29 start_atlas.sh
[2025-10-06 20:33:37] -rw-r--r--. 2 boinc boinc    565604 Oct  6 20:29 input.tar.gz
[2025-10-06 20:33:37] -rw-------. 1 boinc boinc    133120 Oct  6 20:33 result.tar.gz
20:33:38 (2366980): run_atlas exited; CPU time 25.414104
20:33:38 (2366980): called boinc_finish(0)

</stderr_txt>
]]>

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