Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:21:30 (18553): wrapper (7.7.26015): starting
23:21:30 (18553): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 23:21:30] Arguments: --nthreads 8
[2025-10-06 23:21:30] Threads: 8
[2025-10-06 23:21:30] Checking for CVMFS
[2025-10-06 23:21:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 23:21:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 23:21:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 23:21:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 23:21:30] 2.11.2.0 2787 89004 84136 151422 3 56 16871471 20275200 1 130560 2 43756796 99.988 2816009 17866 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-06 23:21:30] CVMFS is ok
[2025-10-06 23:21:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 23:21:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 23:21:30] Further information can be found at the LHC@home message board.
[2025-10-06 23:21:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 23:21:30] Checking for apptainer binary...
[2025-10-06 23:21:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 23:21:30] Running /usr/bin/apptainer --version
[2025-10-06 23:21:30] apptainer version 1.3.2-1.el7
[2025-10-06 23:21:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 23:21:32] c-115-2.aglt2.org
[2025-10-06 23:21:32] apptainer works
[2025-10-06 23:21:32] Set ATHENA_PROC_NUMBER=8
[2025-10-06 23:21:32] Set ATHENA_CORE_NUMBER=8
[2025-10-06 23:21:32] Starting ATLAS job with PandaID=6832973723
[2025-10-06 23:21:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 01:00:05]  *** The last 200 lines of the pilot log: ***
[2025-10-07 01:00:05]  scope=mc23_13p6TeV
[2025-10-07 01:00:05]  status=None
[2025-10-07 01:00:05]  status_code=0
[2025-10-07 01:00:05]  storage_token=
[2025-10-07 01:00:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6832973723/log.46376905._119658.job.log.tgz.1
[2025-10-07 01:00:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/94/log.46376905._119658.job.log.tgz.1
[2025-10-07 01:00:05]  workdir=None
[2025-10-07 01:00:05] ]
[2025-10-07 01:00:05] 2025-10-07 04:59:05,180 | INFO     | transferring file log.46376905._119658.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832973723/log.46376905._119658.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-07 01:00:05] 2025-10-07 04:59:05,180 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832973723/log.46376905._119658.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._119658.job
[2025-10-07 01:00:05] 2025-10-07 04:59:05,208 | INFO     | adding to output.list: log.46376905._119658.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/94/log.46376905._119658.job.log.tg
[2025-10-07 01:00:05] 2025-10-07 04:59:05,209 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 01:00:05] 2025-10-07 04:59:05,209 | INFO     | summary of transferred files:
[2025-10-07 01:00:05] 2025-10-07 04:59:05,209 | INFO     |  -- lfn=log.46376905._119658.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 01:00:05] 2025-10-07 04:59:05,210 | INFO     | stage-out finished correctly
[2025-10-07 01:00:05] 2025-10-07 04:59:06,639 | INFO     | time since job start (5837s) is within the limit (172800.0s)
[2025-10-07 01:00:05] 2025-10-07 04:59:07,966 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 01:00:05] 2025-10-07 04:59:08,161 | INFO     | job 6832973723 has state=finished
[2025-10-07 01:00:05] 2025-10-07 04:59:08,162 | INFO     | preparing for final server update for job 6832973723 in state='finished'
[2025-10-07 01:00:05] 2025-10-07 04:59:08,162 | INFO     | this job has now completed (state=finished)
[2025-10-07 01:00:05] 2025-10-07 04:59:08,163 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 01:00:05] 2025-10-07 04:59:08,163 | INFO     | log transfer has been attempted: DONE
[2025-10-07 01:00:05] 2025-10-07 04:59:08,163 | INFO     | job 6832973723 has finished - writing final server update
[2025-10-07 01:00:05] 2025-10-07 04:59:08,163 | INFO     | total number of processed events: 400 (read)
[2025-10-07 01:00:05] 2025-10-07 04:59:08,165 | INFO     | executing command: lscpu
[2025-10-07 01:00:05] 2025-10-07 04:59:08,194 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 01:00:05] 2025-10-07 04:59:08,646 | INFO     | time since job start (5839s) is within the limit (172800.0s)
[2025-10-07 01:00:05] 2025-10-07 04:59:08,646 | INFO     | 5841s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-07 01:00:05] 2025-10-07 04:59:09,131 | WARNING  | process 28721 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 01:00:05] 2025-10-07 04:59:09,131 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832973723/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 01:00:05] 2025-10-07 04:59:09,215 | INFO     | number of running child processes to parent process 28721: 1
[2025-10-07 01:00:05] 2025-10-07 04:59:09,215 | INFO     | maximum number of monitored processes: 6
[2025-10-07 01:00:05] 2025-10-07 04:59:10,653 | INFO     | time since job start (5841s) is within the limit (172800.0s)
[2025-10-07 01:00:05] 2025-10-07 04:59:11,717 | INFO     | monitor loop #431: job 0:6832973723 is in state 'finished'
[2025-10-07 01:00:05] 2025-10-07 04:59:11,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 01:00:05] 2025-10-07 04:59:11,763 | INFO     | PID=22226 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 01:00:05] 2025-10-07 04:59:12,763 | INFO     | time since job start (5843s) is within the limit (172800.0s)
[2025-10-07 01:00:05] 2025-10-07 04:59:13,635 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-07 01:00:05] 2025-10-07 04:59:13,638 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-10-07 01:00:05] 2025-10-07 04:59:13,640 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832973723/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 01:00:05] 2025-10-07 04:59:13,641 | INFO     | extracted standard info from prmon json
[2025-10-07 01:00:05] 2025-10-07 04:59:13,641 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 01:00:05] 2025-10-07 04:59:13,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 01:00:05] 2025-10-07 04:59:13,641 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 01:00:05] 2025-10-07 04:59:13,642 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 01:00:05] 2025-10-07 04:59:13,644 | INFO     | fitting pss+swap vs Time
[2025-10-07 01:00:05] 2025-10-07 04:59:13,645 | INFO     | sum of square deviations: 218571540.0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,645 | INFO     | sum of deviations: -15307852583.0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,646 | INFO     | mean x: 1759810328.0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,646 | INFO     | mean y: 2646260.842696629
[2025-10-07 01:00:05] 2025-10-07 04:59:13,646 | INFO     | -- intersect: 123252530829.82582
[2025-10-07 01:00:05] 2025-10-07 04:59:13,646 | INFO     | intersect: 123252530829.82582
[2025-10-07 01:00:05] 2025-10-07 04:59:13,646 | INFO     | chi2: 0.08315706075282538
[2025-10-07 01:00:05] 2025-10-07 04:59:13,646 | INFO     | -- intersect: 123252530829.82582
[2025-10-07 01:00:05] 2025-10-07 04:59:13,646 | INFO     | current memory leak: -70.04 B/s (using 89 data points, chi2=0.08)
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | could have reported an average CPU frequency of 2095 MHz (7 samples)
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | ..............................
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | . Timing measurements:
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | . get job = 0 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | . initial setup = 2 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | . payload setup = 8 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | . stage-in = 0 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,647 | INFO     | . payload execution = 5806 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,648 | INFO     | . stage-out = 0 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,648 | INFO     | . log creation = 0 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,648 | INFO     | ..............................
[2025-10-07 01:00:05] 2025-10-07 04:59:13,733 | INFO     | 
[2025-10-07 01:00:05] 2025-10-07 04:59:13,733 | INFO     | job summary report
[2025-10-07 01:00:05] 2025-10-07 04:59:13,733 | INFO     | --------------------------------------------------
[2025-10-07 01:00:05] 2025-10-07 04:59:13,733 | INFO     | PanDA job id: 6832973723
[2025-10-07 01:00:05] 2025-10-07 04:59:13,733 | INFO     | task id: 46376905
[2025-10-07 01:00:05] 2025-10-07 04:59:13,734 | INFO     | errors: (none)
[2025-10-07 01:00:05] 2025-10-07 04:59:13,734 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 01:00:05] 2025-10-07 04:59:13,734 | INFO     | pilot state: finished 
[2025-10-07 01:00:05] 2025-10-07 04:59:13,734 | INFO     | transexitcode: 0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,734 | INFO     | exeerrorcode: 0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | exeerrordiag: 
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | exitcode: 0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | exitmsg: OK
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | cpuconsumptiontime: 43124 s
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | nevents: 400
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | neventsw: 0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | pid: 28721
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | pgrp: 28721
[2025-10-07 01:00:05] 2025-10-07 04:59:13,735 | INFO     | corecount: 8
[2025-10-07 01:00:05] 2025-10-07 04:59:13,736 | INFO     | event service: False
[2025-10-07 01:00:05] 2025-10-07 04:59:13,736 | INFO     | sizes: {0: 2348820, 6: 2349082, 11: 2349110, 5818: 2375812, 5819: 2384810, 5822: 2384866, 5828: 2385188}
[2025-10-07 01:00:05] 2025-10-07 04:59:13,736 | INFO     | --------------------------------------------------
[2025-10-07 01:00:05] 2025-10-07 04:59:13,736 | INFO     | 
[2025-10-07 01:00:05] 2025-10-07 04:59:13,736 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-07 01:00:05] 2025-10-07 04:59:13,764 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,764 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,765 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,765 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,765 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,768 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 01:00:05] 2025-10-07 04:59:13,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,768 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 01:00:05] 2025-10-07 04:59:13,768 | INFO     | job 6832973723 has completed (purged errors)
[2025-10-07 01:00:05] 2025-10-07 04:59:13,769 | INFO     | overall cleanup function is called
[2025-10-07 01:00:05] 2025-10-07 04:59:14,778 | INFO     | --- collectZombieJob: --- 10, [28721]
[2025-10-07 01:00:05] 2025-10-07 04:59:14,778 | INFO     | zombie collector waiting for pid 28721
[2025-10-07 01:00:05] 2025-10-07 04:59:14,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 01:00:05] 2025-10-07 04:59:14,779 | INFO     | collected zombie processes
[2025-10-07 01:00:05] 2025-10-07 04:59:14,779 | INFO     | will attempt to kill all subprocesses of pid=28721
[2025-10-07 01:00:05] 2025-10-07 04:59:14,866 | INFO     | process IDs to be killed: [28721] (in reverse order)
[2025-10-07 01:00:05] 2025-10-07 04:59:14,925 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 01:00:05] 2025-10-07 04:59:14,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 01:00:05] 2025-10-07 04:59:14,931 | INFO     | did not find any defunct processes belonging to 28721
[2025-10-07 01:00:05] 2025-10-07 04:59:14,935 | INFO     | did not find any defunct processes belonging to 28721
[2025-10-07 01:00:05] 2025-10-07 04:59:14,935 | INFO     | ready for new job
[2025-10-07 01:00:05] 2025-10-07 04:59:14,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 01:00:05] 2025-10-07 04:59:14,937 | INFO     | ***************************************
[2025-10-07 01:00:05] 2025-10-07 04:59:14,937 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 01:00:05] 2025-10-07 04:59:14,937 | INFO     | ***************************************
[2025-10-07 01:00:05] 2025-10-07 04:59:14,937 | INFO     | 
[2025-10-07 01:00:05] 2025-10-07 04:59:14,938 | INFO     | architecture information:
[2025-10-07 01:00:05] 2025-10-07 04:59:14,938 | INFO     | executing command: cat /etc/os-release
[2025-10-07 01:00:05] 2025-10-07 04:59:14,958 | INFO     | cat /etc/os-release:
[2025-10-07 01:00:05] NAME="CentOS Linux"
[2025-10-07 01:00:05] VERSION="7 (Core)"
[2025-10-07 01:00:05] ID="centos"
[2025-10-07 01:00:05] ID_LIKE="rhel fedora"
[2025-10-07 01:00:05] VERSION_ID="7"
[2025-10-07 01:00:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 01:00:05] ANSI_COLOR="0;31"
[2025-10-07 01:00:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 01:00:05] HOME_URL="https://www.centos.org/"
[2025-10-07 01:00:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 01:00:05] 
[2025-10-07 01:00:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 01:00:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 01:00:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 01:00:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 01:00:05] 
[2025-10-07 01:00:05] 2025-10-07 04:59:14,958 | INFO     | ***************************************
[2025-10-07 01:00:05] 2025-10-07 04:59:15,461 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-07 01:00:05] 2025-10-07 04:59:15,483 | INFO     | sufficient remaining disk space (18616418304 B)
[2025-10-07 01:00:05] 2025-10-07 04:59:15,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 01:00:05] 2025-10-07 04:59:15,484 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 01:00:05] 2025-10-07 04:59:15,484 | INFO     | update_server=False
[2025-10-07 01:00:05] 2025-10-07 04:59:15,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 01:00:05] 2025-10-07 04:59:15,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 01:00:05] 2025-10-07 04:59:15,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 01:00:05] 2025-10-07 04:59:15,486 | INFO     | aborting loop
[2025-10-07 01:00:05] 2025-10-07 04:59:15,785 | INFO     | all data control threads have been joined
[2025-10-07 01:00:05] 2025-10-07 04:59:15,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 01:00:05] 2025-10-07 04:59:15,943 | INFO     | all payload control threads have been joined
[2025-10-07 01:00:05] 2025-10-07 04:59:16,188 | INFO     | all job control threads have been joined
[2025-10-07 01:00:05] 2025-10-07 04:59:16,490 | INFO     | [job] retrieve thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:16,491 | INFO     | [job] queue monitor thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:16,491 | INFO     | [job] job monitor thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:16,609 | INFO     | [payload] validate_post thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:16,790 | INFO     | [data] control thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:16,884 | INFO     | [job] validate thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:16,949 | INFO     | [payload] control thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,008 | INFO     | [data] copytool_in thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,079 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,194 | INFO     | [job] control thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,503 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,580 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,686 | INFO     | [payload] failed_post thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,699 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:17,817 | INFO     | [data] copytool_out thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:18,558 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 01:00:05] 2025-10-07 04:59:22,563 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 01:00:05] 2025-10-07 04:59:45,977 | INFO     | PID=22226 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 01:00:05] 2025-10-07 04:59:45,978 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 01:00:05] 2025-10-07 04:59:45,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 01:00:05] 2025-10-07 04:59:45,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 01:00:05] 2025-10-07 04:59:58,352 | INFO     | [monitor] cgroup control has ended
[2025-10-07 01:00:05] 2025-10-07 04:59:59,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140471963572032)>', '<ExcThread(monitor, started 140470848050944)>']
[2025-10-07 01:00:05] 2025-10-07 05:00:00,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 01:00:05] 2025-10-07 05:00:00,049 | INFO     | [monitor] control thread has ended
[2025-10-07 01:00:05] 2025-10-07 05:00:04,894 | INFO     | all workflow threads have been joined
[2025-10-07 01:00:05] 2025-10-07 05:00:04,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 01:00:05] 2025-10-07 05:00:04,895 | INFO     | traces error code: 0
[2025-10-07 01:00:05] 2025-10-07 05:00:04,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 01:00:05] 2025-10-07 05:00:05,019 [wrapper] ==== pilot stdout END ====
[2025-10-07 01:00:05] 2025-10-07 05:00:05,024 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 01:00:05] 2025-10-07 05:00:05,029 [wrapper] pilotpid: 22226
[2025-10-07 01:00:05] 2025-10-07 05:00:05,033 [wrapper] Pilot exit status: 0
[2025-10-07 01:00:05] 2025-10-07 05:00:05,052 [wrapper] pandaids: 6832973723
[2025-10-07 01:00:05] 2025-10-07 05:00:05,108 [wrapper] cleanup supervisor_pilot 15862 22227
[2025-10-07 01:00:05] 2025-10-07 05:00:05,112 [wrapper] Test setup, not cleaning
[2025-10-07 01:00:05] 2025-10-07 05:00:05,118 [wrapper] apfmon messages muted
[2025-10-07 01:00:05] 2025-10-07 05:00:05,123 [wrapper] ==== wrapper stdout END ====
[2025-10-07 01:00:05] 2025-10-07 05:00:05,127 [wrapper] ==== wrapper stderr END ====
[2025-10-07 01:00:05]  *** Error codes and diagnostics ***
[2025-10-07 01:00:05]     "exeErrorCode": 0,
[2025-10-07 01:00:05]     "exeErrorDiag": "",
[2025-10-07 01:00:05]     "pilotErrorCode": 0,
[2025-10-07 01:00:05]     "pilotErrorDiag": "",
[2025-10-07 01:00:05]  *** Listing of results directory ***
[2025-10-07 01:00:05] total 389020
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 17:13 pilot3.tar.gz
[2025-10-07 01:00:05] -rwx------ 1 boincer umatlas     36292 Oct  6 17:14 runpilot2-wrapper.sh
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 17:14 queuedata.json
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas       100 Oct  6 23:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 01:00:05] -rwxr-xr-x 1 boincer umatlas      7986 Oct  6 23:21 run_atlas
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas       105 Oct  6 23:21 job.xml
[2025-10-07 01:00:05] -rw-r--r-- 2 boincer umatlas 214248446 Oct  6 23:21 EVNT.46376901._004440.pool.root.1
[2025-10-07 01:00:05] -rw-r--r-- 2 boincer umatlas     15120 Oct  6 23:21 start_atlas.sh
[2025-10-07 01:00:05] drwxrwx--x 2 boincer umatlas      4096 Oct  6 23:21 shared
[2025-10-07 01:00:05] -rw-r--r-- 2 boincer umatlas    565596 Oct  6 23:21 input.tar.gz
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas         0 Oct  6 23:21 boinc_lockfile
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas      2521 Oct  6 23:21 pandaJob.out
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas    974984 Oct  6 23:21 agis_schedconf.cvmfs.json
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas   1560401 Oct  6 23:21 agis_ddmendpoints.agis.ALL.json
[2025-10-07 01:00:05] drwx------ 4 boincer umatlas      4096 Oct  6 23:21 pilot3
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas      5909 Oct  7 00:56 init_data.xml
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas 177847177 Oct  7 00:58 HITS.46376905._119658.pool.root.1
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas       529 Oct  7 00:58 boinc_task_state.xml
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas      1051 Oct  7 00:59 memory_monitor_summary.json
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas    358704 Oct  7 00:59 log.46376905._119658.job.log.tgz.1
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas        95 Oct  7 00:59 pilot_heartbeat.json
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas      7855 Oct  7 00:59 heartbeat.json
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas      8192 Oct  7 00:59 boinc_mmap_file
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas        27 Oct  7 00:59 wrapper_checkpoint.txt
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas      4746 Oct  7 01:00 pilotlog.txt
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas    827952 Oct  7 01:00 log.46376905._119658.job.log.1
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas       357 Oct  7 01:00 output.list
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas       620 Oct  7 01:00 runtime_log
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas   1208320 Oct  7 01:00 result.tar.gz
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas      8698 Oct  7 01:00 runtime_log.err
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas       657 Oct  7 01:00 1CoLDmfi7P8n9Rq4apOajLDm4fhM0noT9bVof3QYDmh4JMDmjMmCvn.diag
[2025-10-07 01:00:05] -rw-r--r-- 1 boincer umatlas     22027 Oct  7 01:00 stderr.txt
[2025-10-07 01:00:05] HITS file was successfully produced:
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas 177847177 Oct  7 00:58 shared/HITS.pool.root.1
[2025-10-07 01:00:05]  *** Contents of shared directory: ***
[2025-10-07 01:00:05] total 384664
[2025-10-07 01:00:05] -rw-r--r-- 2 boincer umatlas 214248446 Oct  6 23:21 ATLAS.root_0
[2025-10-07 01:00:05] -rw-r--r-- 2 boincer umatlas     15120 Oct  6 23:21 start_atlas.sh
[2025-10-07 01:00:05] -rw-r--r-- 2 boincer umatlas    565596 Oct  6 23:21 input.tar.gz
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas 177847177 Oct  7 00:58 HITS.pool.root.1
[2025-10-07 01:00:05] -rw------- 1 boincer umatlas   1208320 Oct  7 01:00 result.tar.gz
01:00:06 (18553): run_atlas exited; CPU time 43125.440455
01:00:06 (18553): called boinc_finish(0)

</stderr_txt>
]]>

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