Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:33:24 (9644): wrapper (7.7.26015): starting
04:33:24 (9644): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 04:33:24] Arguments: --nthreads 8
[2025-10-07 04:33:24] Threads: 8
[2025-10-07 04:33:24] Checking for CVMFS
[2025-10-07 04:33:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 04:33:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 04:33:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 04:33:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 04:33:24] 2.11.0.0 12346 26770 58604 151420 2 186 3894904 4096001 595 130560 0 5211656 99.734 2122046 308 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 04:33:24] CVMFS is ok
[2025-10-07 04:33:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 04:33:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 04:33:24] Further information can be found at the LHC@home message board.
[2025-10-07 04:33:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 04:33:24] Checking for apptainer binary...
[2025-10-07 04:33:24] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 04:33:24] apptainer is not installed, using version from CVMFS
[2025-10-07 04:33:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 04:33:24] WARNING: Environment variable TMPDIR already has value [/tmp/job_10287822/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node178
[2025-10-07 04:33:24] apptainer works
[2025-10-07 04:33:24] Set ATHENA_PROC_NUMBER=8
[2025-10-07 04:33:24] Set ATHENA_CORE_NUMBER=8
[2025-10-07 04:33:24] Starting ATLAS job with PandaID=6830661467
[2025-10-07 04:33:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10287822/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 05:14:39]  *** The last 200 lines of the pilot log: ***
[2025-10-07 05:14:39]  protocol_id=None
[2025-10-07 05:14:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 05:14:39]  replicas=None
[2025-10-07 05:14:39]  scope=mc23_13p6TeV
[2025-10-07 05:14:39]  status=None
[2025-10-07 05:14:39]  status_code=0
[2025-10-07 05:14:39]  storage_token=
[2025-10-07 05:14:39]  surl=/tmp/job_10287822/atlas/pilot/slots/0/PanDA_Pilot-6830661467/log.46376905._072019.job.log.tgz.1
[2025-10-07 05:14:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/bc/log.46376905._072019.job.log.tgz.1
[2025-10-07 05:14:39]  workdir=None
[2025-10-07 05:14:39] ]
[2025-10-07 05:14:39] 2025-10-07 03:13:25,849 | INFO     | transferring file log.46376905._072019.job.log.tgz.1 from /tmp/job_10287822/atlas/pilot/slots/0/PanDA_Pilot-6830661467/log.46376905._072019.job.log.tgz.1 to /tmp/j
[2025-10-07 05:14:39] 2025-10-07 03:13:25,849 | INFO     | executing command: /usr/bin/env mv /tmp/job_10287822/atlas/pilot/slots/0/PanDA_Pilot-6830661467/log.46376905._072019.job.log.tgz.1 /tmp/job_10287822/atlas/pilot/sl
[2025-10-07 05:14:39] 2025-10-07 03:13:25,857 | INFO     | adding to output.list: log.46376905._072019.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/bc/log.46376905._072019.job.log.tg
[2025-10-07 05:14:39] 2025-10-07 03:13:25,858 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 05:14:39] 2025-10-07 03:13:25,858 | INFO     | summary of transferred files:
[2025-10-07 05:14:39] 2025-10-07 03:13:25,858 | INFO     |  -- lfn=log.46376905._072019.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 05:14:39] 2025-10-07 03:13:25,858 | INFO     | stage-out finished correctly
[2025-10-07 05:14:39] 2025-10-07 03:13:26,815 | INFO     | time since job start (2397s) is within the limit (172800.0s)
[2025-10-07 05:14:39] 2025-10-07 03:13:27,378 | INFO     | monitor loop #182: job 0:6830661467 is in state 'finished'
[2025-10-07 05:14:39] 2025-10-07 03:13:27,378 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 05:14:39] 2025-10-07 03:13:28,818 | INFO     | time since job start (2399s) is within the limit (172800.0s)
[2025-10-07 05:14:39] 2025-10-07 03:13:29,354 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 05:14:39] 2025-10-07 03:13:29,403 | INFO     | job 6830661467 has state=finished
[2025-10-07 05:14:39] 2025-10-07 03:13:29,403 | INFO     | preparing for final server update for job 6830661467 in state='finished'
[2025-10-07 05:14:39] 2025-10-07 03:13:29,403 | INFO     | this job has now completed (state=finished)
[2025-10-07 05:14:39] 2025-10-07 03:13:29,403 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 05:14:39] 2025-10-07 03:13:29,403 | INFO     | log transfer has been attempted: DONE
[2025-10-07 05:14:39] 2025-10-07 03:13:29,403 | INFO     | job 6830661467 has finished - writing final server update
[2025-10-07 05:14:39] 2025-10-07 03:13:29,403 | INFO     | total number of processed events: 400 (read)
[2025-10-07 05:14:39] 2025-10-07 03:13:29,404 | INFO     | executing command: lscpu
[2025-10-07 05:14:39] 2025-10-07 03:13:29,433 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 05:14:39] 2025-10-07 03:13:29,885 | INFO     | monitor loop #183: job 0:6830661467 is in state 'finished'
[2025-10-07 05:14:39] 2025-10-07 03:13:29,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 05:14:39] 2025-10-07 03:13:30,823 | INFO     | time since job start (2401s) is within the limit (172800.0s)
[2025-10-07 05:14:39] 2025-10-07 03:13:31,164 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 05:14:39] 2025-10-07 03:13:31,180 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2833.346109375
[2025-10-07 05:14:39] 2025-10-07 03:13:31,185 | INFO     | using path: /tmp/job_10287822/atlas/pilot/slots/0/PanDA_Pilot-6830661467/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 05:14:39] 2025-10-07 03:13:31,186 | INFO     | extracted standard info from prmon json
[2025-10-07 05:14:39] 2025-10-07 03:13:31,186 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 05:14:39] 2025-10-07 03:13:31,186 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 05:14:39] 2025-10-07 03:13:31,186 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 05:14:39] 2025-10-07 03:13:31,186 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | fitting pss+swap vs Time
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | sum of square deviations: 10150888.0
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | sum of deviations: 139892001.5
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | mean x: 1759805677.5
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | mean y: 2569142.21875
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | -- intersect: -24249766069.886684
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | intersect: -24249766069.886684
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | chi2: 7.038263983730928e-05
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | -- intersect: -24249766069.886684
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | current memory leak: 13.78 B/s (using 32 data points, chi2=0.00)
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | could have reported an average CPU frequency of 2611 MHz (5 samples)
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | ..............................
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | . Timing measurements:
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | . get job = 0 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | . initial setup = 1 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | . payload setup = 2 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,187 | INFO     | . stage-in = 0 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,188 | INFO     | . payload execution = 2376 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,188 | INFO     | . stage-out = 0 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,188 | INFO     | . log creation = 0 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,188 | INFO     | ..............................
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | 
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | job summary report
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | --------------------------------------------------
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | PanDA job id: 6830661467
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | task id: 46376905
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | errors: (none)
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | pilot state: finished 
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | transexitcode: 0
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | exeerrorcode: 0
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | exeerrordiag: 
[2025-10-07 05:14:39] 2025-10-07 03:13:31,237 | INFO     | exitcode: 0
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | exitmsg: OK
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | cpuconsumptiontime: 17024 s
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | nevents: 400
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | neventsw: 0
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | pid: 29073
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | pgrp: 29073
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | corecount: 8
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | event service: False
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | sizes: {0: 2348553, 1: 2348919, 3: 2349181, 11: 2349209, 2383: 2374465, 2384: 2383493, 2387: 2383677, 2389: 2383903}
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | --------------------------------------------------
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | 
[2025-10-07 05:14:39] 2025-10-07 03:13:31,238 | INFO     | executing command: ls -lF /tmp/job_10287822/atlas/pilot/slots/0
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | job 6830661467 has completed (purged errors)
[2025-10-07 05:14:39] 2025-10-07 03:13:31,248 | INFO     | overall cleanup function is called
[2025-10-07 05:14:39] 2025-10-07 03:13:32,254 | INFO     | --- collectZombieJob: --- 10, [29073]
[2025-10-07 05:14:39] 2025-10-07 03:13:32,254 | INFO     | zombie collector waiting for pid 29073
[2025-10-07 05:14:39] 2025-10-07 03:13:32,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 05:14:39] 2025-10-07 03:13:32,254 | INFO     | collected zombie processes
[2025-10-07 05:14:39] 2025-10-07 03:13:32,254 | INFO     | will attempt to kill all subprocesses of pid=29073
[2025-10-07 05:14:39] 2025-10-07 03:13:32,360 | INFO     | process IDs to be killed: [29073] (in reverse order)
[2025-10-07 05:14:39] 2025-10-07 03:13:32,400 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 05:14:39] 2025-10-07 03:13:32,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 05:14:39] 2025-10-07 03:13:32,403 | INFO     | did not find any defunct processes belonging to 29073
[2025-10-07 05:14:39] 2025-10-07 03:13:32,407 | INFO     | did not find any defunct processes belonging to 29073
[2025-10-07 05:14:39] 2025-10-07 03:13:32,407 | INFO     | ready for new job
[2025-10-07 05:14:39] 2025-10-07 03:13:32,407 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 05:14:39] 2025-10-07 03:13:32,407 | INFO     | ***************************************
[2025-10-07 05:14:39] 2025-10-07 03:13:32,407 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 05:14:39] 2025-10-07 03:13:32,407 | INFO     | ***************************************
[2025-10-07 05:14:39] 2025-10-07 03:13:32,407 | INFO     | 
[2025-10-07 05:14:39] 2025-10-07 03:13:32,421 | INFO     | architecture information:
[2025-10-07 05:14:39] 2025-10-07 03:13:32,421 | INFO     | executing command: cat /etc/os-release
[2025-10-07 05:14:39] 2025-10-07 03:13:32,427 | INFO     | cat /etc/os-release:
[2025-10-07 05:14:39] NAME="CentOS Linux"
[2025-10-07 05:14:39] VERSION="7 (Core)"
[2025-10-07 05:14:39] ID="centos"
[2025-10-07 05:14:39] ID_LIKE="rhel fedora"
[2025-10-07 05:14:39] VERSION_ID="7"
[2025-10-07 05:14:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 05:14:39] ANSI_COLOR="0;31"
[2025-10-07 05:14:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 05:14:39] HOME_URL="https://www.centos.org/"
[2025-10-07 05:14:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 05:14:39] 
[2025-10-07 05:14:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 05:14:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 05:14:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 05:14:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 05:14:39] 
[2025-10-07 05:14:39] 2025-10-07 03:13:32,427 | INFO     | ***************************************
[2025-10-07 05:14:39] 2025-10-07 03:13:32,930 | INFO     | executing command: df -mP /tmp/job_10287822/atlas/pilot/slots/0
[2025-10-07 05:14:39] 2025-10-07 03:13:32,936 | INFO     | sufficient remaining disk space (224008339456 B)
[2025-10-07 05:14:39] 2025-10-07 03:13:32,936 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 05:14:39] 2025-10-07 03:13:32,936 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 05:14:39] 2025-10-07 03:13:32,936 | INFO     | update_server=False
[2025-10-07 05:14:39] 2025-10-07 03:13:32,936 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 05:14:39] 2025-10-07 03:13:32,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 05:14:39] 2025-10-07 03:13:33,150 | INFO     | all payload control threads have been joined
[2025-10-07 05:14:39] 2025-10-07 03:13:33,163 | INFO     | all job control threads have been joined
[2025-10-07 05:14:39] 2025-10-07 03:13:33,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 05:14:39] 2025-10-07 03:13:33,393 | INFO     | aborting loop
[2025-10-07 05:14:39] 2025-10-07 03:13:33,438 | INFO     | all data control threads have been joined
[2025-10-07 05:14:39] 2025-10-07 03:13:33,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 05:14:39] 2025-10-07 03:13:33,941 | INFO     | [job] retrieve thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:33,941 | INFO     | [job] queue monitor thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,155 | INFO     | [payload] control thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,169 | INFO     | [job] control thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,222 | INFO     | [job] validate thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,398 | INFO     | [job] job monitor thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,412 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,435 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,443 | INFO     | [data] control thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,579 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,876 | INFO     | [data] copytool_in thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:34,938 | INFO     | [payload] failed_post thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:35,408 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 05:14:39] 2025-10-07 03:13:35,428 | INFO     | [payload] validate_post thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:35,920 | INFO     | [data] copytool_out thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:39,413 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:13:43,633 | INFO     | job.realtimelogging is not enabled
[2025-10-07 05:14:39] 2025-10-07 03:13:44,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 05:14:39] 2025-10-07 03:14:04,018 | INFO     | PID=15665 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 05:14:39] 2025-10-07 03:14:04,019 | INFO     | .. there are 5 such processes running
[2025-10-07 05:14:39] 2025-10-07 03:14:04,019 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 05:14:39] 2025-10-07 03:14:04,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 05:14:39] 2025-10-07 03:14:04,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 05:14:39] 2025-10-07 03:14:32,868 | INFO     | [monitor] cgroup control has ended
[2025-10-07 05:14:39] 2025-10-07 03:14:33,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062646016)>']
[2025-10-07 05:14:39] 2025-10-07 03:14:34,166 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 05:14:39] 2025-10-07 03:14:34,167 | INFO     | [monitor] control thread has ended
[2025-10-07 05:14:39] 2025-10-07 03:14:38,983 | INFO     | all workflow threads have been joined
[2025-10-07 05:14:39] 2025-10-07 03:14:38,983 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 05:14:39] 2025-10-07 03:14:38,983 | INFO     | traces error code: 0
[2025-10-07 05:14:39] 2025-10-07 03:14:38,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 05:14:39] 2025-10-07 03:14:39,036 [wrapper] ==== pilot stdout END ====
[2025-10-07 05:14:39] 2025-10-07 03:14:39,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 05:14:39] 2025-10-07 03:14:39,038 [wrapper] pilotpid: 15665
[2025-10-07 05:14:39] 2025-10-07 03:14:39,039 [wrapper] Pilot exit status: 0
[2025-10-07 05:14:39] 2025-10-07 03:14:39,043 [wrapper] pandaids: 6830661467
[2025-10-07 05:14:39] 2025-10-07 03:14:39,067 [wrapper] cleanup supervisor_pilot  5859 15666
[2025-10-07 05:14:39] 2025-10-07 03:14:39,068 [wrapper] Test setup, not cleaning
[2025-10-07 05:14:39] 2025-10-07 03:14:39,070 [wrapper] apfmon messages muted
[2025-10-07 05:14:39] 2025-10-07 03:14:39,071 [wrapper] ==== wrapper stdout END ====
[2025-10-07 05:14:39] 2025-10-07 03:14:39,072 [wrapper] ==== wrapper stderr END ====
[2025-10-07 05:14:39]  *** Error codes and diagnostics ***
[2025-10-07 05:14:39]     "exeErrorCode": 0,
[2025-10-07 05:14:39]     "exeErrorDiag": "",
[2025-10-07 05:14:39]     "pilotErrorCode": 0,
[2025-10-07 05:14:39]     "pilotErrorDiag": "",
[2025-10-07 05:14:39]  *** Listing of results directory ***
[2025-10-07 05:14:39] total 385108
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      5112 Oct  5 03:00 queuedata.json
[2025-10-07 05:14:39] -rwx------ 1 mf493845 unix-user     36292 Oct  5 03:02 runpilot2-wrapper.sh
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user    552446 Oct  5 03:02 pilot3.tar.gz
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user       100 Oct  7 03:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 05:14:39] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 03:38 run_atlas
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user       105 Oct  7 03:38 job.xml
[2025-10-07 05:14:39] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 04:33 shared
[2025-10-07 05:14:39] -rw-r--r-- 2 mf493845 unix-user    565596 Oct  7 04:33 input.tar.gz
[2025-10-07 05:14:39] -rw-r--r-- 2 mf493845 unix-user 214402627 Oct  7 04:33 EVNT.46376901._002621.pool.root.1
[2025-10-07 05:14:39] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 04:33 start_atlas.sh
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      6389 Oct  7 04:33 init_data.xml
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user         0 Oct  7 04:33 boinc_setup_complete
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      8192 Oct  7 04:33 boinc_mmap_file
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user         0 Oct  7 04:33 boinc_lockfile
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      2518 Oct  7 04:33 pandaJob.out
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user    974984 Oct  7 04:33 agis_schedconf.cvmfs.json
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user   1560401 Oct  7 04:33 agis_ddmendpoints.agis.ALL.json
[2025-10-07 05:14:39] drwx------ 4 mf493845 unix-user       400 Oct  7 04:33 pilot3
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user 174732080 Oct  7 05:13 HITS.46376905._072019.pool.root.1
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      1007 Oct  7 05:13 memory_monitor_summary.json
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user    283327 Oct  7 05:13 log.46376905._072019.job.log.tgz.1
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      7759 Oct  7 05:13 heartbeat.json
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user        95 Oct  7 05:14 pilot_heartbeat.json
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      4907 Oct  7 05:14 pilotlog.txt
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user    391963 Oct  7 05:14 log.46376905._072019.job.log.1
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user       357 Oct  7 05:14 output.list
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user       620 Oct  7 05:14 runtime_log
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user    696320 Oct  7 05:14 result.tar.gz
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user      9076 Oct  7 05:14 runtime_log.err
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user       642 Oct  7 05:14 bJLMDmxJSP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRvEMDmsMJN0m.diag
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user     22232 Oct  7 05:14 stderr.txt
[2025-10-07 05:14:39] HITS file was successfully produced:
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user 174732080 Oct  7 05:13 shared/HITS.pool.root.1
[2025-10-07 05:14:39]  *** Contents of shared directory: ***
[2025-10-07 05:14:39] total 381272
[2025-10-07 05:14:39] -rw-r--r-- 2 mf493845 unix-user    565596 Oct  7 04:33 input.tar.gz
[2025-10-07 05:14:39] -rw-r--r-- 2 mf493845 unix-user 214402627 Oct  7 04:33 ATLAS.root_0
[2025-10-07 05:14:39] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 04:33 start_atlas.sh
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user 174732080 Oct  7 05:13 HITS.pool.root.1
[2025-10-07 05:14:39] -rw------- 1 mf493845 unix-user    696320 Oct  7 05:14 result.tar.gz
05:14:40 (9644): run_atlas exited; CPU time 17058.412050
05:14:40 (9644): called boinc_finish(0)

</stderr_txt>
]]>

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