Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
05:26:43 (28822): wrapper (7.7.26015): starting
05:26:43 (28822): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 05:26:43] Arguments: --nthreads 8
[2025-10-07 05:26:43] Threads: 8
[2025-10-07 05:26:43] Checking for CVMFS
[2025-10-07 05:26:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 05:26:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 05:26:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 05:26:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 05:26:43] 2.11.0.0 5810 11068 37240 151422 3 1 2302429 4096001 2 130560 0 10 2.869 305225 150 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 05:26:43] CVMFS is ok
[2025-10-07 05:26:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 05:26:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 05:26:43] Further information can be found at the LHC@home message board.
[2025-10-07 05:26:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 05:26:43] Checking for apptainer binary...
[2025-10-07 05:26:43] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 05:26:43] apptainer is not installed, using version from CVMFS
[2025-10-07 05:26:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 05:28:57] WARNING: Environment variable TMPDIR already has value [/tmp/job_10287785/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node285
[2025-10-07 05:28:57] apptainer works
[2025-10-07 05:28:57] Set ATHENA_PROC_NUMBER=8
[2025-10-07 05:28:57] Set ATHENA_CORE_NUMBER=8
[2025-10-07 05:28:57] Starting ATLAS job with PandaID=6833156783
[2025-10-07 05:28:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10287785/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 06:49:13]  *** The last 200 lines of the pilot log: ***
[2025-10-07 06:49:13]  protocol_id=None
[2025-10-07 06:49:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 06:49:13]  replicas=None
[2025-10-07 06:49:13]  scope=mc23_13p6TeV
[2025-10-07 06:49:13]  status=None
[2025-10-07 06:49:13]  status_code=0
[2025-10-07 06:49:13]  storage_token=
[2025-10-07 06:49:13]  surl=/tmp/job_10287785/atlas/pilot/slots/0/PanDA_Pilot-6833156783/log.46376905._123169.job.log.tgz.1
[2025-10-07 06:49:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/53/log.46376905._123169.job.log.tgz.1
[2025-10-07 06:49:13]  workdir=None
[2025-10-07 06:49:13] ]
[2025-10-07 06:49:13] 2025-10-07 04:48:17,852 | INFO     | transferring file log.46376905._123169.job.log.tgz.1 from /tmp/job_10287785/atlas/pilot/slots/0/PanDA_Pilot-6833156783/log.46376905._123169.job.log.tgz.1 to /tmp/j
[2025-10-07 06:49:13] 2025-10-07 04:48:17,853 | INFO     | executing command: /usr/bin/env mv /tmp/job_10287785/atlas/pilot/slots/0/PanDA_Pilot-6833156783/log.46376905._123169.job.log.tgz.1 /tmp/job_10287785/atlas/pilot/sl
[2025-10-07 06:49:13] 2025-10-07 04:48:17,862 | INFO     | adding to output.list: log.46376905._123169.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/53/log.46376905._123169.job.log.tg
[2025-10-07 06:49:13] 2025-10-07 04:48:17,862 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 06:49:13] 2025-10-07 04:48:17,862 | INFO     | summary of transferred files:
[2025-10-07 06:49:13] 2025-10-07 04:48:17,862 | INFO     |  -- lfn=log.46376905._123169.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 06:49:13] 2025-10-07 04:48:17,862 | INFO     | stage-out finished correctly
[2025-10-07 06:49:13] 2025-10-07 04:48:18,356 | INFO     | time since job start (4637s) is within the limit (172800.0s)
[2025-10-07 06:49:13] 2025-10-07 04:48:19,374 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 06:49:13] 2025-10-07 04:48:20,192 | INFO     | monitor loop #407: job 0:6833156783 is in state 'finished'
[2025-10-07 06:49:13] 2025-10-07 04:48:20,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 06:49:13] 2025-10-07 04:48:20,361 | INFO     | time since job start (4639s) is within the limit (172800.0s)
[2025-10-07 06:49:13] 2025-10-07 04:48:21,122 | INFO     | job 6833156783 has state=finished
[2025-10-07 06:49:13] 2025-10-07 04:48:21,122 | INFO     | preparing for final server update for job 6833156783 in state='finished'
[2025-10-07 06:49:13] 2025-10-07 04:48:21,123 | INFO     | this job has now completed (state=finished)
[2025-10-07 06:49:13] 2025-10-07 04:48:21,123 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 06:49:13] 2025-10-07 04:48:21,123 | INFO     | log transfer has been attempted: DONE
[2025-10-07 06:49:13] 2025-10-07 04:48:21,123 | INFO     | job 6833156783 has finished - writing final server update
[2025-10-07 06:49:13] 2025-10-07 04:48:21,123 | INFO     | total number of processed events: 400 (read)
[2025-10-07 06:49:13] 2025-10-07 04:48:21,123 | INFO     | executing command: lscpu
[2025-10-07 06:49:13] 2025-10-07 04:48:21,155 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 06:49:13] 2025-10-07 04:48:22,367 | INFO     | time since job start (4641s) is within the limit (172800.0s)
[2025-10-07 06:49:13] 2025-10-07 04:48:22,695 | INFO     | monitor loop #408: job 0:6833156783 is in state 'finished'
[2025-10-07 06:49:13] 2025-10-07 04:48:22,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 06:49:13] 2025-10-07 04:48:23,213 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 06:49:13] 2025-10-07 04:48:23,217 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2379.4194843749997
[2025-10-07 06:49:13] 2025-10-07 04:48:23,222 | INFO     | using path: /tmp/job_10287785/atlas/pilot/slots/0/PanDA_Pilot-6833156783/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 06:49:13] 2025-10-07 04:48:23,223 | INFO     | extracted standard info from prmon json
[2025-10-07 06:49:13] 2025-10-07 04:48:23,223 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 06:49:13] 2025-10-07 04:48:23,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 06:49:13] 2025-10-07 04:48:23,223 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 06:49:13] 2025-10-07 04:48:23,223 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | fitting pss+swap vs Time
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | sum of square deviations: 89127252.5
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | sum of deviations: 60452955660.0
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | mean x: 1759810357.5
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | mean y: 1834050.696969697
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | -- intersect: -1193636862620.181
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | intersect: -1193636862620.181
[2025-10-07 06:49:13] 2025-10-07 04:48:23,224 | INFO     | chi2: 8.775725530528623
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | -- intersect: -1193636862620.181
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | current memory leak: 678.28 B/s (using 66 data points, chi2=8.78)
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | could have reported an average CPU frequency of 2593 MHz (6 samples)
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | ..............................
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . Timing measurements:
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . get job = 0 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . initial setup = 7 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . payload setup = 188 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . stage-in = 0 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . payload execution = 4429 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . stage-out = 0 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | . log creation = 0 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,225 | INFO     | ..............................
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | 
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | job summary report
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | --------------------------------------------------
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | PanDA job id: 6833156783
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | task id: 46376905
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | errors: (none)
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | pilot state: finished 
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | transexitcode: 0
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | exeerrorcode: 0
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | exeerrordiag: 
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | exitcode: 0
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | exitmsg: OK
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | cpuconsumptiontime: 18795 s
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | nevents: 400
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | neventsw: 0
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | pid: 24579
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | pgrp: 24579
[2025-10-07 06:49:13] 2025-10-07 04:48:23,276 | INFO     | corecount: 8
[2025-10-07 06:49:13] 2025-10-07 04:48:23,277 | INFO     | event service: False
[2025-10-07 06:49:13] 2025-10-07 04:48:23,277 | INFO     | sizes: {0: 2347941, 1: 2348923, 4: 2349185, 12: 2349213, 4621: 2375339, 4622: 2384367, 4624: 2384551, 4628: 2384745}
[2025-10-07 06:49:13] 2025-10-07 04:48:23,277 | INFO     | --------------------------------------------------
[2025-10-07 06:49:13] 2025-10-07 04:48:23,277 | INFO     | 
[2025-10-07 06:49:13] 2025-10-07 04:48:23,277 | INFO     | executing command: ls -lF /tmp/job_10287785/atlas/pilot/slots/0
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,285 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | job 6833156783 has completed (purged errors)
[2025-10-07 06:49:13] 2025-10-07 04:48:23,286 | INFO     | overall cleanup function is called
[2025-10-07 06:49:13] 2025-10-07 04:48:24,292 | INFO     | --- collectZombieJob: --- 10, [24579]
[2025-10-07 06:49:13] 2025-10-07 04:48:24,292 | INFO     | zombie collector waiting for pid 24579
[2025-10-07 06:49:13] 2025-10-07 04:48:24,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 06:49:13] 2025-10-07 04:48:24,292 | INFO     | collected zombie processes
[2025-10-07 06:49:13] 2025-10-07 04:48:24,292 | INFO     | will attempt to kill all subprocesses of pid=24579
[2025-10-07 06:49:13] 2025-10-07 04:48:24,387 | INFO     | process IDs to be killed: [24579] (in reverse order)
[2025-10-07 06:49:13] 2025-10-07 04:48:24,419 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 06:49:13] 2025-10-07 04:48:24,419 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 06:49:13] 2025-10-07 04:48:24,423 | INFO     | did not find any defunct processes belonging to 24579
[2025-10-07 06:49:13] 2025-10-07 04:48:24,426 | INFO     | did not find any defunct processes belonging to 24579
[2025-10-07 06:49:13] 2025-10-07 04:48:24,426 | INFO     | ready for new job
[2025-10-07 06:49:13] 2025-10-07 04:48:24,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 06:49:13] 2025-10-07 04:48:24,427 | INFO     | ***************************************
[2025-10-07 06:49:13] 2025-10-07 04:48:24,427 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 06:49:13] 2025-10-07 04:48:24,427 | INFO     | ***************************************
[2025-10-07 06:49:13] 2025-10-07 04:48:24,427 | INFO     | 
[2025-10-07 06:49:13] 2025-10-07 04:48:24,440 | INFO     | architecture information:
[2025-10-07 06:49:13] 2025-10-07 04:48:24,440 | INFO     | executing command: cat /etc/os-release
[2025-10-07 06:49:13] 2025-10-07 04:48:24,446 | INFO     | cat /etc/os-release:
[2025-10-07 06:49:13] NAME="CentOS Linux"
[2025-10-07 06:49:13] VERSION="7 (Core)"
[2025-10-07 06:49:13] ID="centos"
[2025-10-07 06:49:13] ID_LIKE="rhel fedora"
[2025-10-07 06:49:13] VERSION_ID="7"
[2025-10-07 06:49:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 06:49:13] ANSI_COLOR="0;31"
[2025-10-07 06:49:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 06:49:13] HOME_URL="https://www.centos.org/"
[2025-10-07 06:49:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 06:49:13] 
[2025-10-07 06:49:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 06:49:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 06:49:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 06:49:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 06:49:13] 
[2025-10-07 06:49:13] 2025-10-07 04:48:24,446 | INFO     | ***************************************
[2025-10-07 06:49:13] 2025-10-07 04:48:24,948 | INFO     | executing command: df -mP /tmp/job_10287785/atlas/pilot/slots/0
[2025-10-07 06:49:13] 2025-10-07 04:48:24,955 | INFO     | sufficient remaining disk space (225686061056 B)
[2025-10-07 06:49:13] 2025-10-07 04:48:24,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 06:49:13] 2025-10-07 04:48:24,955 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 06:49:13] 2025-10-07 04:48:24,956 | INFO     | update_server=False
[2025-10-07 06:49:13] 2025-10-07 04:48:24,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 06:49:13] 2025-10-07 04:48:24,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 06:49:13] 2025-10-07 04:48:25,198 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-07 06:49:13] 2025-10-07 04:48:25,198 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-07 06:49:13] 2025-10-07 04:48:25,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 06:49:13] 2025-10-07 04:48:25,198 | INFO     | will abort loop
[2025-10-07 06:49:13] 2025-10-07 04:48:25,308 | INFO     | all data control threads have been joined
[2025-10-07 06:49:13] 2025-10-07 04:48:25,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 06:49:13] 2025-10-07 04:48:25,550 | INFO     | all payload control threads have been joined
[2025-10-07 06:49:13] 2025-10-07 04:48:25,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 06:49:13] 2025-10-07 04:48:25,961 | INFO     | [job] retrieve thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:25,961 | INFO     | [job] queue monitor thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,127 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,162 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,204 | INFO     | [job] job monitor thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,313 | INFO     | [data] control thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,358 | INFO     | [data] copytool_in thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,388 | INFO     | all job control threads have been joined
[2025-10-07 06:49:13] 2025-10-07 04:48:26,555 | INFO     | [payload] control thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,689 | INFO     | [payload] failed_post thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,794 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:26,966 | INFO     | [payload] validate_post thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:27,359 | INFO     | [job] validate thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:27,393 | INFO     | [job] control thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:27,934 | INFO     | [data] copytool_out thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:29,431 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 06:49:13] 2025-10-07 04:48:55,549 | INFO     | PID=30687 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 06:49:13] 2025-10-07 04:48:55,550 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 06:49:13] 2025-10-07 04:48:55,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 06:49:13] 2025-10-07 04:48:55,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 06:49:13] 2025-10-07 04:49:07,660 | INFO     | [monitor] cgroup control has ended
[2025-10-07 06:49:13] 2025-10-07 04:49:08,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062646016)>']
[2025-10-07 06:49:13] 2025-10-07 04:49:08,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 06:49:13] 2025-10-07 04:49:08,614 | INFO     | [monitor] control thread has ended
[2025-10-07 06:49:13] 2025-10-07 04:49:13,265 | INFO     | all workflow threads have been joined
[2025-10-07 06:49:13] 2025-10-07 04:49:13,265 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 06:49:13] 2025-10-07 04:49:13,265 | INFO     | traces error code: 0
[2025-10-07 06:49:13] 2025-10-07 04:49:13,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 06:49:13] 2025-10-07 04:49:13,319 [wrapper] ==== pilot stdout END ====
[2025-10-07 06:49:13] 2025-10-07 04:49:13,320 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 06:49:13] 2025-10-07 04:49:13,321 [wrapper] pilotpid: 30687
[2025-10-07 06:49:13] 2025-10-07 04:49:13,323 [wrapper] Pilot exit status: 0
[2025-10-07 06:49:13] 2025-10-07 04:49:13,327 [wrapper] pandaids: 6833156783
[2025-10-07 06:49:13] 2025-10-07 04:49:13,348 [wrapper] cleanup supervisor_pilot 16073 30692
[2025-10-07 06:49:13] 2025-10-07 04:49:13,349 [wrapper] Test setup, not cleaning
[2025-10-07 06:49:13] 2025-10-07 04:49:13,350 [wrapper] apfmon messages muted
[2025-10-07 06:49:13] 2025-10-07 04:49:13,352 [wrapper] ==== wrapper stdout END ====
[2025-10-07 06:49:13] 2025-10-07 04:49:13,353 [wrapper] ==== wrapper stderr END ====
[2025-10-07 06:49:13]  *** Error codes and diagnostics ***
[2025-10-07 06:49:13]     "exeErrorCode": 0,
[2025-10-07 06:49:13]     "exeErrorDiag": "",
[2025-10-07 06:49:13]     "pilotErrorCode": 0,
[2025-10-07 06:49:13]     "pilotErrorDiag": "",
[2025-10-07 06:49:13]  *** Listing of results directory ***
[2025-10-07 06:49:13] total 388968
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user    552446 Oct  7 02:02 pilot3.tar.gz
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      5112 Oct  7 02:02 queuedata.json
[2025-10-07 06:49:13] -rwx------ 1 mf493845 unix-user     36292 Oct  7 02:03 runpilot2-wrapper.sh
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user       100 Oct  7 04:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 06:49:13] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 04:32 run_atlas
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user       105 Oct  7 04:32 job.xml
[2025-10-07 06:49:13] -rw-r--r-- 2 mf493845 unix-user 214348115 Oct  7 05:26 EVNT.46376901._004569.pool.root.1
[2025-10-07 06:49:13] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 05:26 start_atlas.sh
[2025-10-07 06:49:13] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 05:26 shared
[2025-10-07 06:49:13] -rw-r--r-- 2 mf493845 unix-user    565602 Oct  7 05:26 input.tar.gz
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      6387 Oct  7 05:26 init_data.xml
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user         0 Oct  7 05:26 boinc_setup_complete
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      8192 Oct  7 05:26 boinc_mmap_file
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user         0 Oct  7 05:26 boinc_lockfile
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      2520 Oct  7 05:28 pandaJob.out
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user    974984 Oct  7 05:30 agis_schedconf.cvmfs.json
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user   1560401 Oct  7 05:30 agis_ddmendpoints.agis.ALL.json
[2025-10-07 06:49:13] drwx------ 4 mf493845 unix-user       400 Oct  7 05:31 pilot3
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user 178044601 Oct  7 06:47 HITS.46376905._123169.pool.root.1
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      1017 Oct  7 06:48 memory_monitor_summary.json
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user    326434 Oct  7 06:48 log.46376905._123169.job.log.tgz.1
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      7790 Oct  7 06:48 heartbeat.json
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user        95 Oct  7 06:48 pilot_heartbeat.json
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      4946 Oct  7 06:49 pilotlog.txt
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user    698527 Oct  7 06:49 log.46376905._123169.job.log.1
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user       357 Oct  7 06:49 output.list
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user       620 Oct  7 06:49 runtime_log
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user   1044480 Oct  7 06:49 result.tar.gz
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user       643 Oct  7 06:49 VBzNDmbLAQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1TKMDmyuCsRn.diag
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user      9076 Oct  7 06:49 runtime_log.err
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user     22267 Oct  7 06:49 stderr.txt
[2025-10-07 06:49:13] HITS file was successfully produced:
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user 178044601 Oct  7 06:47 shared/HITS.pool.root.1
[2025-10-07 06:49:13]  *** Contents of shared directory: ***
[2025-10-07 06:49:13] total 384792
[2025-10-07 06:49:13] -rw-r--r-- 2 mf493845 unix-user 214348115 Oct  7 05:26 ATLAS.root_0
[2025-10-07 06:49:13] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 05:26 start_atlas.sh
[2025-10-07 06:49:13] -rw-r--r-- 2 mf493845 unix-user    565602 Oct  7 05:26 input.tar.gz
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user 178044601 Oct  7 06:47 HITS.pool.root.1
[2025-10-07 06:49:13] -rw------- 1 mf493845 unix-user   1044480 Oct  7 06:49 result.tar.gz
06:49:15 (28822): run_atlas exited; CPU time 18863.092759
06:49:15 (28822): called boinc_finish(0)

</stderr_txt>
]]>

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