Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
03:51:37 (27895): wrapper (7.7.26015): starting
03:51:37 (27895): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 03:51:37] Arguments: --nthreads 8
[2025-10-07 03:51:37] Threads: 8
[2025-10-07 03:51:37] Checking for CVMFS
[2025-10-07 03:51:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 03:51:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 03:51:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 03:51:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 03:51:37] 2.11.0.0 4609 30939 76060 151418 0 188 3534166 4096000 917 130560 4 7543762 99.815 2243098 283 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 03:51:37] CVMFS is ok
[2025-10-07 03:51:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 03:51:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 03:51:37] Further information can be found at the LHC@home message board.
[2025-10-07 03:51:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 03:51:37] Checking for apptainer binary...
[2025-10-07 03:51:37] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 03:51:37] apptainer is not installed, using version from CVMFS
[2025-10-07 03:51:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 03:51:37] WARNING: Environment variable TMPDIR already has value [/tmp/job_10287486/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node089
[2025-10-07 03:51:37] apptainer works
[2025-10-07 03:51:37] Set ATHENA_PROC_NUMBER=8
[2025-10-07 03:51:37] Set ATHENA_CORE_NUMBER=8
[2025-10-07 03:51:37] Starting ATLAS job with PandaID=6829589851
[2025-10-07 03:51:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10287486/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 04:33:51]  *** The last 200 lines of the pilot log: ***
[2025-10-07 04:33:51]  mtime=0
[2025-10-07 04:33:51]  protocol_id=None
[2025-10-07 04:33:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 04:33:51]  replicas=None
[2025-10-07 04:33:51]  scope=mc23_13p6TeV
[2025-10-07 04:33:51]  status=None
[2025-10-07 04:33:51]  status_code=0
[2025-10-07 04:33:51]  storage_token=
[2025-10-07 04:33:51]  surl=/tmp/job_10287486/atlas/pilot/slots/0/PanDA_Pilot-6829589851/log.46376905._058393.job.log.tgz.1
[2025-10-07 04:33:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/e5/log.46376905._058393.job.log.tgz.1
[2025-10-07 04:33:51]  workdir=None
[2025-10-07 04:33:51] ]
[2025-10-07 04:33:51] 2025-10-07 02:32:45,594 | INFO     | transferring file log.46376905._058393.job.log.tgz.1 from /tmp/job_10287486/atlas/pilot/slots/0/PanDA_Pilot-6829589851/log.46376905._058393.job.log.tgz.1 to /tmp/j
[2025-10-07 04:33:51] 2025-10-07 02:32:45,594 | INFO     | executing command: /usr/bin/env mv /tmp/job_10287486/atlas/pilot/slots/0/PanDA_Pilot-6829589851/log.46376905._058393.job.log.tgz.1 /tmp/job_10287486/atlas/pilot/sl
[2025-10-07 04:33:51] 2025-10-07 02:32:45,602 | INFO     | adding to output.list: log.46376905._058393.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/e5/log.46376905._058393.job.log.tg
[2025-10-07 04:33:51] 2025-10-07 02:32:45,603 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 04:33:51] 2025-10-07 02:32:45,603 | INFO     | summary of transferred files:
[2025-10-07 04:33:51] 2025-10-07 02:32:45,603 | INFO     |  -- lfn=log.46376905._058393.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 04:33:51] 2025-10-07 02:32:45,603 | INFO     | stage-out finished correctly
[2025-10-07 04:33:51] 2025-10-07 02:32:47,493 | INFO     | time since job start (2465s) is within the limit (172800.0s)
[2025-10-07 04:33:51] 2025-10-07 02:32:48,452 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 04:33:51] 2025-10-07 02:32:49,499 | INFO     | job 6829589851 has state=finished
[2025-10-07 04:33:51] 2025-10-07 02:32:49,499 | INFO     | time since job start (2467s) is within the limit (172800.0s)
[2025-10-07 04:33:51] 2025-10-07 02:32:49,499 | INFO     | preparing for final server update for job 6829589851 in state='finished'
[2025-10-07 04:33:51] 2025-10-07 02:32:49,499 | INFO     | this job has now completed (state=finished)
[2025-10-07 04:33:51] 2025-10-07 02:32:49,500 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 04:33:51] 2025-10-07 02:32:49,500 | INFO     | log transfer has been attempted: DONE
[2025-10-07 04:33:51] 2025-10-07 02:32:49,500 | INFO     | job 6829589851 has finished - writing final server update
[2025-10-07 04:33:51] 2025-10-07 02:32:49,500 | INFO     | total number of processed events: 400 (read)
[2025-10-07 04:33:51] 2025-10-07 02:32:49,500 | INFO     | executing command: lscpu
[2025-10-07 04:33:51] 2025-10-07 02:32:49,530 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 04:33:51] 2025-10-07 02:32:51,385 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 04:33:51] 2025-10-07 02:32:51,401 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2495.683921875
[2025-10-07 04:33:51] 2025-10-07 02:32:51,406 | INFO     | using path: /tmp/job_10287486/atlas/pilot/slots/0/PanDA_Pilot-6829589851/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 04:33:51] 2025-10-07 02:32:51,407 | INFO     | extracted standard info from prmon json
[2025-10-07 04:33:51] 2025-10-07 02:32:51,407 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 04:33:51] 2025-10-07 02:32:51,407 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 04:33:51] 2025-10-07 02:32:51,407 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 04:33:51] 2025-10-07 02:32:51,407 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | fitting pss+swap vs Time
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | sum of square deviations: 12176972.5
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | sum of deviations: -1499780099.0
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | mean x: 1759803231.5
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | mean y: 2602496.470588235
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | -- intersect: 216749241676.24945
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | intersect: 216749241676.24945
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | chi2: 0.017534987932512746
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | -- intersect: 216749241676.24945
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | current memory leak: -123.17 B/s (using 34 data points, chi2=0.02)
[2025-10-07 04:33:51] 2025-10-07 02:32:51,408 | INFO     | could have reported an average CPU frequency of 2513 MHz (5 samples)
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | ..............................
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . Timing measurements:
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . get job = 0 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . initial setup = 1 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . payload setup = 2 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . stage-in = 0 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . payload execution = 2444 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . stage-out = 0 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | . log creation = 0 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,409 | INFO     | ..............................
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | 
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | job summary report
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | --------------------------------------------------
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | PanDA job id: 6829589851
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | task id: 46376905
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | errors: (none)
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | pilot state: finished 
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | transexitcode: 0
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | exeerrorcode: 0
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | exeerrordiag: 
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | exitcode: 0
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | exitmsg: OK
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | cpuconsumptiontime: 17949 s
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | nevents: 400
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | neventsw: 0
[2025-10-07 04:33:51] 2025-10-07 02:32:51,460 | INFO     | pid: 8914
[2025-10-07 04:33:51] 2025-10-07 02:32:51,461 | INFO     | pgrp: 8914
[2025-10-07 04:33:51] 2025-10-07 02:32:51,461 | INFO     | corecount: 8
[2025-10-07 04:33:51] 2025-10-07 02:32:51,461 | INFO     | event service: False
[2025-10-07 04:33:51] 2025-10-07 02:32:51,461 | INFO     | sizes: {0: 2348942, 2: 2349204, 10: 2349232, 2450: 2383543, 2453: 2383543, 2456: 2383769}
[2025-10-07 04:33:51] 2025-10-07 02:32:51,461 | INFO     | --------------------------------------------------
[2025-10-07 04:33:51] 2025-10-07 02:32:51,461 | INFO     | 
[2025-10-07 04:33:51] 2025-10-07 02:32:51,461 | INFO     | executing command: ls -lF /tmp/job_10287486/atlas/pilot/slots/0
[2025-10-07 04:33:51] 2025-10-07 02:32:51,468 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | job 6829589851 has completed (purged errors)
[2025-10-07 04:33:51] 2025-10-07 02:32:51,469 | INFO     | overall cleanup function is called
[2025-10-07 04:33:51] 2025-10-07 02:32:51,989 | WARNING  | process 8914 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 04:33:51] 2025-10-07 02:32:52,069 | INFO     | using path: /tmp/job_10287486/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 04:33:51] 2025-10-07 02:32:52,162 | INFO     | number of running child processes to parent process 8914: 1
[2025-10-07 04:33:51] 2025-10-07 02:32:52,162 | INFO     | maximum number of monitored processes: 6
[2025-10-07 04:33:51] 2025-10-07 02:32:52,162 | INFO     | aborting job monitoring since job object (job id=6829589851) has expired
[2025-10-07 04:33:51] 2025-10-07 02:32:52,475 | INFO     | --- collectZombieJob: --- 10, [8914]
[2025-10-07 04:33:51] 2025-10-07 02:32:52,475 | INFO     | zombie collector waiting for pid 8914
[2025-10-07 04:33:51] 2025-10-07 02:32:52,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 04:33:51] 2025-10-07 02:32:52,476 | INFO     | collected zombie processes
[2025-10-07 04:33:51] 2025-10-07 02:32:52,476 | INFO     | will attempt to kill all subprocesses of pid=8914
[2025-10-07 04:33:51] 2025-10-07 02:32:52,570 | INFO     | process IDs to be killed: [8914] (in reverse order)
[2025-10-07 04:33:51] 2025-10-07 02:32:52,602 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 04:33:51] 2025-10-07 02:32:52,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 04:33:51] 2025-10-07 02:32:52,606 | INFO     | did not find any defunct processes belonging to 8914
[2025-10-07 04:33:51] 2025-10-07 02:32:52,609 | INFO     | did not find any defunct processes belonging to 8914
[2025-10-07 04:33:51] 2025-10-07 02:32:52,609 | INFO     | ready for new job
[2025-10-07 04:33:51] 2025-10-07 02:32:52,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 04:33:51] 2025-10-07 02:32:52,609 | INFO     | ***************************************
[2025-10-07 04:33:51] 2025-10-07 02:32:52,609 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 04:33:51] 2025-10-07 02:32:52,609 | INFO     | ***************************************
[2025-10-07 04:33:51] 2025-10-07 02:32:52,609 | INFO     | 
[2025-10-07 04:33:51] 2025-10-07 02:32:52,623 | INFO     | architecture information:
[2025-10-07 04:33:51] 2025-10-07 02:32:52,623 | INFO     | executing command: cat /etc/os-release
[2025-10-07 04:33:51] 2025-10-07 02:32:52,629 | INFO     | cat /etc/os-release:
[2025-10-07 04:33:51] NAME="CentOS Linux"
[2025-10-07 04:33:51] VERSION="7 (Core)"
[2025-10-07 04:33:51] ID="centos"
[2025-10-07 04:33:51] ID_LIKE="rhel fedora"
[2025-10-07 04:33:51] VERSION_ID="7"
[2025-10-07 04:33:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 04:33:51] ANSI_COLOR="0;31"
[2025-10-07 04:33:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 04:33:51] HOME_URL="https://www.centos.org/"
[2025-10-07 04:33:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 04:33:51] 
[2025-10-07 04:33:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 04:33:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 04:33:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 04:33:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 04:33:51] 
[2025-10-07 04:33:51] 2025-10-07 02:32:52,629 | INFO     | ***************************************
[2025-10-07 04:33:51] 2025-10-07 02:32:53,132 | INFO     | executing command: df -mP /tmp/job_10287486/atlas/pilot/slots/0
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | INFO     | sufficient remaining disk space (225673478144 B)
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | INFO     | update_server=False
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 04:33:51] 2025-10-07 02:32:53,138 | INFO     | will abort loop
[2025-10-07 04:33:51] 2025-10-07 02:32:53,391 | INFO     | all job control threads have been joined
[2025-10-07 04:33:51] 2025-10-07 02:32:53,394 | INFO     | all data control threads have been joined
[2025-10-07 04:33:51] 2025-10-07 02:32:53,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 04:33:51] 2025-10-07 02:32:54,143 | INFO     | [job] retrieve thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,144 | INFO     | [job] job monitor thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,144 | INFO     | [job] queue monitor thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,192 | INFO     | [data] copytool_in thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,205 | INFO     | all payload control threads have been joined
[2025-10-07 04:33:51] 2025-10-07 02:32:54,233 | INFO     | [job] validate thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,255 | INFO     | [payload] validate_post thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,396 | INFO     | [job] control thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,399 | INFO     | [data] control thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:54,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 04:33:51] 2025-10-07 02:32:54,956 | INFO     | [payload] failed_post thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:55,209 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:55,210 | INFO     | [payload] control thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:55,578 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:55,605 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:55,669 | INFO     | [data] copytool_out thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:32:58,509 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:33:03,224 | INFO     | job.realtimelogging is not enabled
[2025-10-07 04:33:51] 2025-10-07 02:33:04,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 04:33:51] 2025-10-07 02:33:22,683 | INFO     | PID=32629 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 04:33:51] 2025-10-07 02:33:22,683 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 04:33:51] 2025-10-07 02:33:22,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 04:33:51] 2025-10-07 02:33:22,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 04:33:51] 2025-10-07 02:33:46,109 | INFO     | [monitor] cgroup control has ended
[2025-10-07 04:33:51] 2025-10-07 02:33:46,635 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064747264)>']
[2025-10-07 04:33:51] 2025-10-07 02:33:46,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 04:33:51] 2025-10-07 02:33:46,801 | INFO     | [monitor] control thread has ended
[2025-10-07 04:33:51] 2025-10-07 02:33:51,660 | INFO     | all workflow threads have been joined
[2025-10-07 04:33:51] 2025-10-07 02:33:51,660 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 04:33:51] 2025-10-07 02:33:51,660 | INFO     | traces error code: 0
[2025-10-07 04:33:51] 2025-10-07 02:33:51,660 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 04:33:51] 2025-10-07 02:33:51,711 [wrapper] ==== pilot stdout END ====
[2025-10-07 04:33:51] 2025-10-07 02:33:51,712 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 04:33:51] 2025-10-07 02:33:51,714 [wrapper] pilotpid: 32629
[2025-10-07 04:33:51] 2025-10-07 02:33:51,715 [wrapper] Pilot exit status: 0
[2025-10-07 04:33:51] 2025-10-07 02:33:51,719 [wrapper] pandaids: 6829589851
[2025-10-07 04:33:51] 2025-10-07 02:33:51,741 [wrapper] cleanup supervisor_pilot 26265 32630
[2025-10-07 04:33:51] 2025-10-07 02:33:51,742 [wrapper] Test setup, not cleaning
[2025-10-07 04:33:51] 2025-10-07 02:33:51,743 [wrapper] apfmon messages muted
[2025-10-07 04:33:51] 2025-10-07 02:33:51,744 [wrapper] ==== wrapper stdout END ====
[2025-10-07 04:33:51] 2025-10-07 02:33:51,745 [wrapper] ==== wrapper stderr END ====
[2025-10-07 04:33:51]  *** Error codes and diagnostics ***
[2025-10-07 04:33:51]     "exeErrorCode": 0,
[2025-10-07 04:33:51]     "exeErrorDiag": "",
[2025-10-07 04:33:51]     "pilotErrorCode": 0,
[2025-10-07 04:33:51]     "pilotErrorDiag": "",
[2025-10-07 04:33:51]  *** Listing of results directory ***
[2025-10-07 04:33:51] total 385420
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user    552446 Oct  4 13:03 pilot3.tar.gz
[2025-10-07 04:33:51] -rwx------ 1 mf493845 unix-user     36292 Oct  4 13:18 runpilot2-wrapper.sh
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      5112 Oct  4 13:18 queuedata.json
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user       100 Oct  7 02:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 04:33:51] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 02:57 run_atlas
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user       105 Oct  7 02:57 job.xml
[2025-10-07 04:33:51] -rw-r--r-- 2 mf493845 unix-user 211547119 Oct  7 03:51 EVNT.46376901._002095.pool.root.1
[2025-10-07 04:33:51] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 03:51 start_atlas.sh
[2025-10-07 04:33:51] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 03:51 shared
[2025-10-07 04:33:51] -rw-r--r-- 2 mf493845 unix-user    565597 Oct  7 03:51 input.tar.gz
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      6388 Oct  7 03:51 init_data.xml
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user         0 Oct  7 03:51 boinc_setup_complete
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      8192 Oct  7 03:51 boinc_mmap_file
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user         0 Oct  7 03:51 boinc_lockfile
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      2519 Oct  7 03:51 pandaJob.out
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user    975000 Oct  7 03:51 agis_schedconf.cvmfs.json
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user   1560401 Oct  7 03:51 agis_ddmendpoints.agis.ALL.json
[2025-10-07 04:33:51] drwx------ 4 mf493845 unix-user       400 Oct  7 03:51 pilot3
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user 177866704 Oct  7 04:32 HITS.46376905._058393.pool.root.1
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      1015 Oct  7 04:32 memory_monitor_summary.json
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user    297254 Oct  7 04:32 log.46376905._058393.job.log.tgz.1
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      7778 Oct  7 04:32 heartbeat.json
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user        95 Oct  7 04:33 pilot_heartbeat.json
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      4834 Oct  7 04:33 pilotlog.txt
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user    398298 Oct  7 04:33 log.46376905._058393.job.log.1
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user       357 Oct  7 04:33 output.list
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user       620 Oct  7 04:33 runtime_log
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user    716800 Oct  7 04:33 result.tar.gz
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user      9076 Oct  7 04:33 runtime_log.err
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user       642 Oct  7 04:33 mdlMDmoSFP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmy9KNDmbhA36n.diag
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user     22142 Oct  7 04:33 stderr.txt
[2025-10-07 04:33:51] HITS file was successfully produced:
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user 177866704 Oct  7 04:32 shared/HITS.pool.root.1
[2025-10-07 04:33:51]  *** Contents of shared directory: ***
[2025-10-07 04:33:51] total 381564
[2025-10-07 04:33:51] -rw-r--r-- 2 mf493845 unix-user 211547119 Oct  7 03:51 ATLAS.root_0
[2025-10-07 04:33:51] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 03:51 start_atlas.sh
[2025-10-07 04:33:51] -rw-r--r-- 2 mf493845 unix-user    565597 Oct  7 03:51 input.tar.gz
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user 177866704 Oct  7 04:32 HITS.pool.root.1
[2025-10-07 04:33:51] -rw------- 1 mf493845 unix-user    716800 Oct  7 04:33 result.tar.gz
04:33:53 (27895): run_atlas exited; CPU time 17980.710286
04:33:53 (27895): called boinc_finish(0)

</stderr_txt>
]]>

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