Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:51:29 (1850): wrapper (7.7.26015): starting
20:51:29 (1850): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 20:51:29] Arguments: --nthreads 8
[2025-10-06 20:51:29] Threads: 8
[2025-10-06 20:51:29] Checking for CVMFS
[2025-10-06 20:51:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 20:51:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 20:51:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 20:51:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 20:51:29] 2.11.2.0 25047 44853 111956 151417 3 188 17436895 20275201 917 130560 0 48057032 99.974 2128288 22772 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-06 20:51:29] CVMFS is ok
[2025-10-06 20:51:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 20:51:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 20:51:29] Further information can be found at the LHC@home message board.
[2025-10-06 20:51:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 20:51:29] Checking for apptainer binary...
[2025-10-06 20:51:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 20:51:29] Running /usr/bin/apptainer --version
[2025-10-06 20:51:29] apptainer version 1.3.2-1.el7
[2025-10-06 20:51:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 20:51:30] c-205-37.aglt2.org
[2025-10-06 20:51:30] apptainer works
[2025-10-06 20:51:30] Set ATHENA_PROC_NUMBER=8
[2025-10-06 20:51:30] Set ATHENA_CORE_NUMBER=8
[2025-10-06 20:51:30] Starting ATLAS job with PandaID=6830857332
[2025-10-06 20:51:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 21:47:58]  *** The last 200 lines of the pilot log: ***
[2025-10-06 21:47:58]  status=None
[2025-10-06 21:47:58]  status_code=0
[2025-10-06 21:47:58]  storage_token=
[2025-10-06 21:47:58]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6830857332/log.46376905._075148.job.log.tgz.1
[2025-10-06 21:47:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/fe/log.46376905._075148.job.log.tgz.1
[2025-10-06 21:47:58]  workdir=None
[2025-10-06 21:47:58] ]
[2025-10-06 21:47:58] 2025-10-07 01:47:18,932 | INFO     | transferring file log.46376905._075148.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6830857332/log.46376905._075148.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-06 21:47:58] 2025-10-07 01:47:18,932 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6830857332/log.46376905._075148.job.log.tgz.1 /tmp/boinchome/slots/1/log.46376905._075148.job
[2025-10-06 21:47:58] 2025-10-07 01:47:18,952 | INFO     | adding to output.list: log.46376905._075148.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/fe/log.46376905._075148.job.log.tg
[2025-10-06 21:47:58] 2025-10-07 01:47:18,953 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 21:47:58] 2025-10-07 01:47:18,953 | INFO     | summary of transferred files:
[2025-10-06 21:47:58] 2025-10-07 01:47:18,953 | INFO     |  -- lfn=log.46376905._075148.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 21:47:58] 2025-10-07 01:47:18,953 | INFO     | stage-out finished correctly
[2025-10-06 21:47:58] 2025-10-07 01:47:20,023 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 21:47:58] 2025-10-07 01:47:20,542 | INFO     | time since job start (3338s) is within the limit (172800.0s)
[2025-10-06 21:47:58] 2025-10-07 01:47:20,661 | INFO     | job 6830857332 has state=finished
[2025-10-06 21:47:58] 2025-10-07 01:47:20,662 | INFO     | preparing for final server update for job 6830857332 in state='finished'
[2025-10-06 21:47:58] 2025-10-07 01:47:20,663 | INFO     | this job has now completed (state=finished)
[2025-10-06 21:47:58] 2025-10-07 01:47:20,663 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 21:47:58] 2025-10-07 01:47:20,663 | INFO     | log transfer has been attempted: DONE
[2025-10-06 21:47:58] 2025-10-07 01:47:20,663 | INFO     | job 6830857332 has finished - writing final server update
[2025-10-06 21:47:58] 2025-10-07 01:47:20,663 | INFO     | total number of processed events: 400 (read)
[2025-10-06 21:47:58] 2025-10-07 01:47:20,664 | INFO     | executing command: lscpu
[2025-10-06 21:47:58] 2025-10-07 01:47:20,698 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 21:47:58] 2025-10-07 01:47:21,344 | WARNING  | process 12208 can no longer be monitored (due to stat problems) - aborting
[2025-10-06 21:47:58] 2025-10-07 01:47:21,345 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6830857332/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 21:47:58] 2025-10-07 01:47:21,467 | INFO     | number of running child processes to parent process 12208: 1
[2025-10-06 21:47:58] 2025-10-07 01:47:21,467 | INFO     | maximum number of monitored processes: 6
[2025-10-06 21:47:58] 2025-10-07 01:47:22,548 | INFO     | time since job start (3340s) is within the limit (172800.0s)
[2025-10-06 21:47:58] 2025-10-07 01:47:23,691 | INFO     | PID=5707 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-06 21:47:58] 2025-10-07 01:47:23,691 | INFO     | .. there are 2 such processes running
[2025-10-06 21:47:58] 2025-10-07 01:47:23,970 | INFO     | monitor loop #253: job 0:6830857332 is in state 'finished'
[2025-10-06 21:47:58] 2025-10-07 01:47:23,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 21:47:58] 2025-10-07 01:47:24,692 | INFO     | time since job start (3342s) is within the limit (172800.0s)
[2025-10-06 21:47:58] 2025-10-07 01:47:26,224 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 21:47:58] 2025-10-07 01:47:26,226 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2062.7283125
[2025-10-06 21:47:58] 2025-10-07 01:47:26,228 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6830857332/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 21:47:58] 2025-10-07 01:47:26,229 | INFO     | extracted standard info from prmon json
[2025-10-06 21:47:58] 2025-10-07 01:47:26,229 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 21:47:58] 2025-10-07 01:47:26,229 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 21:47:58] 2025-10-07 01:47:26,229 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 21:47:58] 2025-10-07 01:47:26,229 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 21:47:58] 2025-10-07 01:47:26,230 | INFO     | fitting pss+swap vs Time
[2025-10-06 21:47:58] 2025-10-07 01:47:26,230 | INFO     | sum of square deviations: 34277852.0
[2025-10-06 21:47:58] 2025-10-07 01:47:26,230 | INFO     | sum of deviations: -1952384971.0
[2025-10-06 21:47:58] 2025-10-07 01:47:26,230 | INFO     | mean x: 1759800065.5
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | mean y: 2553880.5833333335
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | -- intersect: 100236582542.794
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | intersect: 100236582542.794
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | chi2: 0.010474771551977168
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | -- intersect: 100236582542.794
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | current memory leak: -56.96 B/s (using 48 data points, chi2=0.01)
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | could have reported an average CPU frequency of 2142 MHz (5 samples)
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | ..............................
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | . Timing measurements:
[2025-10-06 21:47:58] 2025-10-07 01:47:26,231 | INFO     | . get job = 0 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,232 | INFO     | . initial setup = 2 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,232 | INFO     | . payload setup = 5 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,232 | INFO     | . stage-in = 0 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,232 | INFO     | . payload execution = 3311 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,232 | INFO     | . stage-out = 0 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,232 | INFO     | . log creation = 0 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,232 | INFO     | ..............................
[2025-10-06 21:47:58] 2025-10-07 01:47:26,286 | INFO     | 
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | job summary report
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | --------------------------------------------------
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | PanDA job id: 6830857332
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | task id: 46376905
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | errors: (none)
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | pilot state: finished 
[2025-10-06 21:47:58] 2025-10-07 01:47:26,287 | INFO     | transexitcode: 0
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | exeerrorcode: 0
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | exeerrordiag: 
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | exitcode: 0
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | exitmsg: OK
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | cpuconsumptiontime: 24581 s
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | nevents: 400
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | neventsw: 0
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | pid: 12208
[2025-10-06 21:47:58] 2025-10-07 01:47:26,288 | INFO     | pgrp: 12208
[2025-10-06 21:47:58] 2025-10-07 01:47:26,289 | INFO     | corecount: 8
[2025-10-06 21:47:58] 2025-10-07 01:47:26,289 | INFO     | event service: False
[2025-10-06 21:47:58] 2025-10-07 01:47:26,289 | INFO     | sizes: {0: 2348645, 1: 2348844, 5: 2349106, 11: 2349162, 3320: 2374827, 3321: 2383825, 3322: 2384009, 3328: 2384235}
[2025-10-06 21:47:58] 2025-10-07 01:47:26,289 | INFO     | --------------------------------------------------
[2025-10-06 21:47:58] 2025-10-07 01:47:26,289 | INFO     | 
[2025-10-06 21:47:58] 2025-10-07 01:47:26,289 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-06 21:47:58] 2025-10-07 01:47:26,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 21:47:58] 2025-10-07 01:47:26,314 | INFO     | job 6830857332 has completed (purged errors)
[2025-10-06 21:47:58] 2025-10-07 01:47:26,314 | INFO     | overall cleanup function is called
[2025-10-06 21:47:58] 2025-10-07 01:47:27,322 | INFO     | --- collectZombieJob: --- 10, [12208]
[2025-10-06 21:47:58] 2025-10-07 01:47:27,322 | INFO     | zombie collector waiting for pid 12208
[2025-10-06 21:47:58] 2025-10-07 01:47:27,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 21:47:58] 2025-10-07 01:47:27,323 | INFO     | collected zombie processes
[2025-10-06 21:47:58] 2025-10-07 01:47:27,323 | INFO     | will attempt to kill all subprocesses of pid=12208
[2025-10-06 21:47:58] 2025-10-07 01:47:27,472 | INFO     | process IDs to be killed: [12208] (in reverse order)
[2025-10-06 21:47:58] 2025-10-07 01:47:27,536 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 21:47:58] 2025-10-07 01:47:27,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 21:47:58] 2025-10-07 01:47:27,540 | INFO     | did not find any defunct processes belonging to 12208
[2025-10-06 21:47:58] 2025-10-07 01:47:27,544 | INFO     | did not find any defunct processes belonging to 12208
[2025-10-06 21:47:58] 2025-10-07 01:47:27,544 | INFO     | ready for new job
[2025-10-06 21:47:58] 2025-10-07 01:47:27,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 21:47:58] 2025-10-07 01:47:27,548 | INFO     | ***************************************
[2025-10-06 21:47:58] 2025-10-07 01:47:27,548 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 21:47:58] 2025-10-07 01:47:27,549 | INFO     | ***************************************
[2025-10-06 21:47:58] 2025-10-07 01:47:27,549 | INFO     | 
[2025-10-06 21:47:58] 2025-10-07 01:47:27,550 | INFO     | architecture information:
[2025-10-06 21:47:58] 2025-10-07 01:47:27,550 | INFO     | executing command: cat /etc/os-release
[2025-10-06 21:47:58] 2025-10-07 01:47:27,567 | INFO     | cat /etc/os-release:
[2025-10-06 21:47:58] NAME="CentOS Linux"
[2025-10-06 21:47:58] VERSION="7 (Core)"
[2025-10-06 21:47:58] ID="centos"
[2025-10-06 21:47:58] ID_LIKE="rhel fedora"
[2025-10-06 21:47:58] VERSION_ID="7"
[2025-10-06 21:47:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 21:47:58] ANSI_COLOR="0;31"
[2025-10-06 21:47:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 21:47:58] HOME_URL="https://www.centos.org/"
[2025-10-06 21:47:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 21:47:58] 
[2025-10-06 21:47:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 21:47:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 21:47:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 21:47:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 21:47:58] 
[2025-10-06 21:47:58] 2025-10-07 01:47:27,567 | INFO     | ***************************************
[2025-10-06 21:47:58] 2025-10-07 01:47:28,070 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-06 21:47:58] 2025-10-07 01:47:28,089 | INFO     | sufficient remaining disk space (32946257920 B)
[2025-10-06 21:47:58] 2025-10-07 01:47:28,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 21:47:58] 2025-10-07 01:47:28,090 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 21:47:58] 2025-10-07 01:47:28,090 | INFO     | update_server=False
[2025-10-06 21:47:58] 2025-10-07 01:47:28,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 21:47:58] 2025-10-07 01:47:28,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 21:47:58] 2025-10-07 01:47:28,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 21:47:58] 2025-10-07 01:47:28,091 | INFO     | aborting loop
[2025-10-06 21:47:58] 2025-10-07 01:47:28,505 | INFO     | all job control threads have been joined
[2025-10-06 21:47:58] 2025-10-07 01:47:28,642 | INFO     | all data control threads have been joined
[2025-10-06 21:47:58] 2025-10-07 01:47:29,096 | INFO     | [job] retrieve thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,097 | INFO     | [job] queue monitor thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,097 | INFO     | [job] job monitor thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,101 | INFO     | [data] copytool_in thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,135 | INFO     | all payload control threads have been joined
[2025-10-06 21:47:58] 2025-10-07 01:47:29,300 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,508 | INFO     | [job] control thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,519 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 21:47:58] 2025-10-07 01:47:29,568 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,646 | INFO     | [data] control thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:29,982 | INFO     | [payload] failed_post thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:30,140 | INFO     | [payload] control thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:30,406 | INFO     | [job] validate thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:30,560 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:30,573 | INFO     | [payload] validate_post thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:30,618 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 21:47:58] 2025-10-07 01:47:31,524 | INFO     | [data] copytool_out thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:34,624 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:39,007 | INFO     | job.realtimelogging is not enabled
[2025-10-06 21:47:58] 2025-10-07 01:47:40,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 21:47:58] 2025-10-07 01:47:47,315 | INFO     | [monitor] cgroup control has ended
[2025-10-06 21:47:58] 2025-10-07 01:47:48,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170640963392)>', '<ExcThread(monitor, started 140170082907904)>']
[2025-10-06 21:47:58] 2025-10-07 01:47:53,435 | INFO     | all workflow threads have been joined
[2025-10-06 21:47:58] 2025-10-07 01:47:53,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 21:47:58] 2025-10-07 01:47:53,435 | INFO     | traces error code: 0
[2025-10-06 21:47:58] 2025-10-07 01:47:53,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 21:47:58] 2025-10-07 01:47:57,923 | INFO     | PID=5707 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-06 21:47:58] 2025-10-07 01:47:57,924 | INFO     | .. there are 2 such processes running
[2025-10-06 21:47:58] 2025-10-07 01:47:57,924 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 21:47:58] 2025-10-07 01:47:57,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 21:47:58] 2025-10-07 01:47:57,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 21:47:58] 2025-10-07 01:47:57,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 21:47:58] 2025-10-07 01:47:57,924 | INFO     | [monitor] control thread has ended
[2025-10-06 21:47:58] 2025-10-07 01:47:58,030 [wrapper] ==== pilot stdout END ====
[2025-10-06 21:47:58] 2025-10-07 01:47:58,033 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 21:47:58] 2025-10-07 01:47:58,036 [wrapper] pilotpid: 5707
[2025-10-06 21:47:58] 2025-10-07 01:47:58,040 [wrapper] Pilot exit status: 0
[2025-10-06 21:47:58] 2025-10-07 01:47:58,053 [wrapper] pandaids: 6830857332
[2025-10-06 21:47:58] 2025-10-07 01:47:58,096 [wrapper] cleanup supervisor_pilot 24373 5708
[2025-10-06 21:47:58] 2025-10-07 01:47:58,099 [wrapper] Test setup, not cleaning
[2025-10-06 21:47:58] 2025-10-07 01:47:58,102 [wrapper] apfmon messages muted
[2025-10-06 21:47:58] 2025-10-07 01:47:58,106 [wrapper] ==== wrapper stdout END ====
[2025-10-06 21:47:58] 2025-10-07 01:47:58,110 [wrapper] ==== wrapper stderr END ====
[2025-10-06 21:47:58]  *** Error codes and diagnostics ***
[2025-10-06 21:47:58]     "exeErrorCode": 0,
[2025-10-06 21:47:58]     "exeErrorDiag": "",
[2025-10-06 21:47:58]     "pilotErrorCode": 0,
[2025-10-06 21:47:58]     "pilotErrorDiag": "",
[2025-10-06 21:47:58]  *** Listing of results directory ***
[2025-10-06 21:47:58] total 380660
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas    552446 Oct  4 23:27 pilot3.tar.gz
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas      5112 Oct  4 23:46 queuedata.json
[2025-10-06 21:47:58] -rwx------ 1 boincer umatlas     36292 Oct  4 23:47 runpilot2-wrapper.sh
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas       100 Oct  6 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 21:47:58] -rwxr-xr-x 1 boincer umatlas      7986 Oct  6 20:51 run_atlas
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas       105 Oct  6 20:51 job.xml
[2025-10-06 21:47:58] -rw-r--r-- 2 boincer umatlas 217980119 Oct  6 20:51 EVNT.46376901._002741.pool.root.1
[2025-10-06 21:47:58] -rw-r--r-- 2 boincer umatlas     15120 Oct  6 20:51 start_atlas.sh
[2025-10-06 21:47:58] drwxrwx--x 2 boincer umatlas      4096 Oct  6 20:51 shared
[2025-10-06 21:47:58] -rw-r--r-- 2 boincer umatlas    565606 Oct  6 20:51 input.tar.gz
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas         0 Oct  6 20:51 boinc_lockfile
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas      2519 Oct  6 20:51 pandaJob.out
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas    974984 Oct  6 20:51 agis_schedconf.cvmfs.json
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas   1560401 Oct  6 20:51 agis_ddmendpoints.agis.ALL.json
[2025-10-06 21:47:58] drwx------ 4 boincer umatlas      4096 Oct  6 20:51 pilot3
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas      6134 Oct  6 21:40 init_data.xml
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas 166289375 Oct  6 21:46 HITS.46376905._075148.pool.root.1
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas       529 Oct  6 21:47 boinc_task_state.xml
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas      1044 Oct  6 21:47 memory_monitor_summary.json
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas    315846 Oct  6 21:47 log.46376905._075148.job.log.tgz.1
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas        95 Oct  6 21:47 pilot_heartbeat.json
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas      7839 Oct  6 21:47 heartbeat.json
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas        27 Oct  6 21:47 wrapper_checkpoint.txt
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas      8192 Oct  6 21:47 boinc_mmap_file
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas       819 Oct  6 21:47 pilotlog.txt
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas    508830 Oct  6 21:47 log.46376905._075148.job.log.1
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas       357 Oct  6 21:47 output.list
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas       620 Oct  6 21:47 runtime_log
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas    839680 Oct  6 21:47 result.tar.gz
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas       657 Oct  6 21:47 UiqMDm6tUP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMDFMDmmoqhln.diag
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas      8703 Oct  6 21:47 runtime_log.err
[2025-10-06 21:47:58] -rw-r--r-- 1 boincer umatlas     22030 Oct  6 21:47 stderr.txt
[2025-10-06 21:47:58] HITS file was successfully produced:
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas 166289375 Oct  6 21:46 shared/HITS.pool.root.1
[2025-10-06 21:47:58]  *** Contents of shared directory: ***
[2025-10-06 21:47:58] total 376660
[2025-10-06 21:47:58] -rw-r--r-- 2 boincer umatlas 217980119 Oct  6 20:51 ATLAS.root_0
[2025-10-06 21:47:58] -rw-r--r-- 2 boincer umatlas     15120 Oct  6 20:51 start_atlas.sh
[2025-10-06 21:47:58] -rw-r--r-- 2 boincer umatlas    565606 Oct  6 20:51 input.tar.gz
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas 166289375 Oct  6 21:46 HITS.pool.root.1
[2025-10-06 21:47:58] -rw------- 1 boincer umatlas    839680 Oct  6 21:47 result.tar.gz
21:48:00 (1850): run_atlas exited; CPU time 24565.559991
21:48:00 (1850): called boinc_finish(0)

</stderr_txt>
]]>

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