Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:41:10 (529425): wrapper (7.7.26015): starting
19:41:10 (529425): wrapper: running run_atlas (--nthreads 11)
[2025-10-06 19:41:10] Arguments: --nthreads 11
[2025-10-06 19:41:10] Threads: 11
[2025-10-06 19:41:10] Checking for CVMFS
[2025-10-06 19:41:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 19:41:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 19:41:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 19:41:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 19:41:11] 2.13.2.0 3269412 27760 274268 151416 2 557 29354627 40960000 34000 16776704 0 327463401 99.812 160329759 36674 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-06 19:41:11] CVMFS is ok
[2025-10-06 19:41:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 19:41:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 19:41:11] Further information can be found at the LHC@home message board.
[2025-10-06 19:41:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 19:41:11] Checking for apptainer binary...
[2025-10-06 19:41:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 19:41:11] Running /usr/bin/apptainer --version
[2025-10-06 19:41:11] apptainer version 1.4.2-1.el9
[2025-10-06 19:41:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 19:41:11] c8-16-2.aglt2.org
[2025-10-06 19:41:11] apptainer works
[2025-10-06 19:41:11] Set ATHENA_PROC_NUMBER=11
[2025-10-06 19:41:11] Set ATHENA_CORE_NUMBER=11
[2025-10-06 19:41:11] Starting ATLAS job with PandaID=6832861941
[2025-10-06 19:41:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 20:20:39]  *** The last 200 lines of the pilot log: ***
[2025-10-06 20:20:39] 2025-10-07 00:19:40,624 | INFO     | time since job start (2298s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:42,060 | INFO     | monitor loop #154: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:42,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:19:42,631 | INFO     | time since job start (2300s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:44,568 | INFO     | monitor loop #155: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:44,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:19:44,638 | INFO     | time since job start (2302s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:46,646 | INFO     | time since job start (2304s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:47,073 | INFO     | monitor loop #156: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:47,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:19:48,653 | INFO     | time since job start (2306s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:49,578 | INFO     | monitor loop #157: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:49,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:19:50,659 | INFO     | time since job start (2308s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:52,085 | INFO     | monitor loop #158: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:52,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:19:52,666 | INFO     | time since job start (2310s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:54,590 | INFO     | monitor loop #159: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:54,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:19:54,675 | INFO     | time since job start (2312s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:57,095 | INFO     | monitor loop #160: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:57,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:19:57,714 | INFO     | PID=535833 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-06 20:20:39] 2025-10-07 00:19:57,715 | INFO     | .. there are 48 such processes running
[2025-10-06 20:20:39] 2025-10-07 00:19:58,716 | INFO     | time since job start (2316s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:19:59,605 | INFO     | monitor loop #161: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:19:59,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:20:00,724 | INFO     | time since job start (2318s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:20:02,110 | INFO     | monitor loop #162: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:20:02,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:20:02,730 | INFO     | time since job start (2320s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:20:04,616 | INFO     | monitor loop #163: job 0:6832861941 is in state 'finished'
[2025-10-06 20:20:39] 2025-10-07 00:20:04,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 20:20:39] 2025-10-07 00:20:04,740 | INFO     | time since job start (2322s) is within the limit (172800.0s)
[2025-10-06 20:20:39] 2025-10-07 00:20:05,589 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-06 20:20:39] 2025-10-07 00:20:05,619 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.990148437496
[2025-10-06 20:20:39] 2025-10-07 00:20:05,649 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6832861941/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 20:20:39] 2025-10-07 00:20:05,649 | INFO     | extracted standard info from prmon json
[2025-10-06 20:20:39] 2025-10-07 00:20:05,649 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 20:20:39] 2025-10-07 00:20:05,649 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 20:20:39] 2025-10-07 00:20:05,649 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 20:20:39] 2025-10-07 00:20:05,649 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 20:20:39] 2025-10-07 00:20:05,650 | INFO     | fitting pss+swap vs Time
[2025-10-06 20:20:39] 2025-10-07 00:20:05,650 | INFO     | sum of square deviations: 8362947.5
[2025-10-06 20:20:39] 2025-10-07 00:20:05,650 | INFO     | sum of deviations: 178160961.50000006
[2025-10-06 20:20:39] 2025-10-07 00:20:05,650 | INFO     | mean x: 1759795299.5
[2025-10-06 20:20:39] 2025-10-07 00:20:05,650 | INFO     | mean y: 2347110.8333333335
[2025-10-06 20:20:39] 2025-10-07 00:20:05,650 | INFO     | -- intersect: -37487643422.06198
[2025-10-06 20:20:39] 2025-10-07 00:20:05,650 | INFO     | intersect: -37487643422.06198
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | chi2: 0.0008319798164737151
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | -- intersect: -37487643422.06198
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | current memory leak: 21.30 B/s (using 30 data points, chi2=0.00)
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | could have reported an average CPU frequency of 3772 MHz (5 samples)
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | ..............................
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . Timing measurements:
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . get job = 0 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . initial setup = 2 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . payload setup = 5 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . stage-in = 0 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . payload execution = 2260 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . stage-out = 1 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | . log creation = 0 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,651 | INFO     | ..............................
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | 
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | job summary report
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | --------------------------------------------------
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | PanDA job id: 6832861941
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | task id: 46376905
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | errors: (none)
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | pilot state: finished 
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | transexitcode: 0
[2025-10-06 20:20:39] 2025-10-07 00:20:05,772 | INFO     | exeerrorcode: 0
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | exeerrordiag: 
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | exitcode: 0
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | exitmsg: OK
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | cpuconsumptiontime: 19042 s
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | nevents: 400
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | neventsw: 0
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | pid: 552644
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | pgrp: 552644
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | corecount: 11
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | event service: False
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | sizes: {0: 2348820, 5: 2349082, 11: 2349138, 2270: 2374315, 2271: 2374314, 2274: 2383368, 2276: 2383552, 2308: 2383778}
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | --------------------------------------------------
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | 
[2025-10-06 20:20:39] 2025-10-07 00:20:05,773 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-06 20:20:39] 2025-10-07 00:20:05,911 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,911 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,911 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,911 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | job 6832861941 has completed (purged errors)
[2025-10-06 20:20:39] 2025-10-07 00:20:05,912 | INFO     | overall cleanup function is called
[2025-10-06 20:20:39] 2025-10-07 00:20:06,930 | INFO     | --- collectZombieJob: --- 10, [552644]
[2025-10-06 20:20:39] 2025-10-07 00:20:06,930 | INFO     | zombie collector waiting for pid 552644
[2025-10-06 20:20:39] 2025-10-07 00:20:06,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 20:20:39] 2025-10-07 00:20:06,930 | INFO     | collected zombie processes
[2025-10-06 20:20:39] 2025-10-07 00:20:06,930 | INFO     | will attempt to kill all subprocesses of pid=552644
[2025-10-06 20:20:39] 2025-10-07 00:20:08,156 | INFO     | process IDs to be killed: [552644] (in reverse order)
[2025-10-06 20:20:39] 2025-10-07 00:20:08,586 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 20:20:39] 2025-10-07 00:20:08,586 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 20:20:39] 2025-10-07 00:20:08,622 | INFO     | did not find any defunct processes belonging to 552644
[2025-10-06 20:20:39] 2025-10-07 00:20:08,656 | INFO     | did not find any defunct processes belonging to 552644
[2025-10-06 20:20:39] 2025-10-07 00:20:08,656 | INFO     | ready for new job
[2025-10-06 20:20:39] 2025-10-07 00:20:08,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 20:20:39] 2025-10-07 00:20:08,657 | INFO     | ***************************************
[2025-10-06 20:20:39] 2025-10-07 00:20:08,657 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 20:20:39] 2025-10-07 00:20:08,658 | INFO     | ***************************************
[2025-10-06 20:20:39] 2025-10-07 00:20:08,658 | INFO     | 
[2025-10-06 20:20:39] 2025-10-07 00:20:08,662 | INFO     | architecture information:
[2025-10-06 20:20:39] 2025-10-07 00:20:08,663 | INFO     | executing command: cat /etc/os-release
[2025-10-06 20:20:39] 2025-10-07 00:20:08,923 | INFO     | cat /etc/os-release:
[2025-10-06 20:20:39] NAME="CentOS Linux"
[2025-10-06 20:20:39] VERSION="7 (Core)"
[2025-10-06 20:20:39] ID="centos"
[2025-10-06 20:20:39] ID_LIKE="rhel fedora"
[2025-10-06 20:20:39] VERSION_ID="7"
[2025-10-06 20:20:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 20:20:39] ANSI_COLOR="0;31"
[2025-10-06 20:20:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 20:20:39] HOME_URL="https://www.centos.org/"
[2025-10-06 20:20:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 20:20:39] 
[2025-10-06 20:20:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 20:20:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 20:20:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 20:20:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 20:20:39] 
[2025-10-06 20:20:39] 2025-10-07 00:20:08,924 | INFO     | ***************************************
[2025-10-06 20:20:39] 2025-10-07 00:20:09,435 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-06 20:20:39] 2025-10-07 00:20:09,598 | INFO     | sufficient remaining disk space (167409352704 B)
[2025-10-06 20:20:39] 2025-10-07 00:20:09,599 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 20:20:39] 2025-10-07 00:20:09,599 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 20:20:39] 2025-10-07 00:20:09,599 | INFO     | update_server=False
[2025-10-06 20:20:39] 2025-10-07 00:20:09,599 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 20:20:39] 2025-10-07 00:20:09,633 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 20:20:39] 2025-10-07 00:20:09,633 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 20:20:39] 2025-10-07 00:20:09,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:20:39] 2025-10-07 00:20:09,633 | INFO     | will abort loop
[2025-10-06 20:20:39] 2025-10-07 00:20:09,803 | INFO     | all payload control threads have been joined
[2025-10-06 20:20:39] 2025-10-07 00:20:09,895 | INFO     | all data control threads have been joined
[2025-10-06 20:20:39] 2025-10-07 00:20:09,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 20:20:39] 2025-10-07 00:20:10,385 | INFO     | all job control threads have been joined
[2025-10-06 20:20:39] 2025-10-07 00:20:10,605 | INFO     | [job] retrieve thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:10,639 | INFO     | [job] job monitor thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:10,682 | INFO     | [data] copytool_in thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:10,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:20:39] 2025-10-07 00:20:10,816 | INFO     | [payload] control thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:10,834 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:10,901 | INFO     | [data] control thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:10,995 | INFO     | [payload] failed_post thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,391 | INFO     | [job] control thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 20:20:39] 2025-10-07 00:20:11,585 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,634 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,651 | INFO     | [job] validate thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,658 | INFO     | [payload] validate_post thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,789 | INFO     | [job] queue monitor thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,905 | INFO     | [data] copytool_out thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:11,921 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:15,594 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 20:20:39] 2025-10-07 00:20:26,067 | INFO     | [monitor] cgroup control has ended
[2025-10-06 20:20:39] 2025-10-07 00:20:26,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140596582737728)>', '<ExcThread(monitor, started 140596310152960)>']
[2025-10-06 20:20:39] 2025-10-07 00:20:31,418 | INFO     | all workflow threads have been joined
[2025-10-06 20:20:39] 2025-10-07 00:20:31,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 20:20:39] 2025-10-07 00:20:31,418 | INFO     | traces error code: 0
[2025-10-06 20:20:39] 2025-10-07 00:20:31,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 20:20:39] 2025-10-07 00:20:39,170 | INFO     | PID=535833 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-06 20:20:39] 2025-10-07 00:20:39,170 | INFO     | .. there are 49 such processes running
[2025-10-06 20:20:39] 2025-10-07 00:20:39,170 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 20:20:39] 2025-10-07 00:20:39,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 20:20:39] 2025-10-07 00:20:39,170 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 20:20:39] 2025-10-07 00:20:39,171 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 20:20:39] 2025-10-07 00:20:39,171 | INFO     | [monitor] control thread has ended
[2025-10-06 20:20:39] 2025-10-07 00:20:39,477 [wrapper] ==== pilot stdout END ====
[2025-10-06 20:20:39] 2025-10-07 00:20:39,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 20:20:39] 2025-10-07 00:20:39,506 [wrapper] pilotpid: 535833
[2025-10-06 20:20:39] 2025-10-07 00:20:39,526 [wrapper] Pilot exit status: 0
[2025-10-06 20:20:39] 2025-10-07 00:20:39,571 [wrapper] pandaids: 6832861941
[2025-10-06 20:20:39] 2025-10-07 00:20:39,757 [wrapper] cleanup supervisor_pilot 1016155 535834
[2025-10-06 20:20:39] 2025-10-07 00:20:39,774 [wrapper] Test setup, not cleaning
[2025-10-06 20:20:39] 2025-10-07 00:20:39,813 [wrapper] apfmon messages muted
[2025-10-06 20:20:39] 2025-10-07 00:20:39,833 [wrapper] ==== wrapper stdout END ====
[2025-10-06 20:20:39] 2025-10-07 00:20:39,836 [wrapper] ==== wrapper stderr END ====
[2025-10-06 20:20:39]  *** Error codes and diagnostics ***
[2025-10-06 20:20:39]     "exeErrorCode": 0,
[2025-10-06 20:20:39]     "exeErrorDiag": "",
[2025-10-06 20:20:39]     "pilotErrorCode": 0,
[2025-10-06 20:20:39]     "pilotErrorDiag": "",
[2025-10-06 20:20:39]  *** Listing of results directory ***
[2025-10-06 20:20:40] total 383912
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas    552446 Oct  6 14:35 pilot3.tar.gz
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas      5112 Oct  6 14:45 queuedata.json
[2025-10-06 20:20:40] -rwx------. 1 boincer umatlas     36292 Oct  6 14:45 runpilot2-wrapper.sh
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas       100 Oct  6 19:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 20:20:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  6 19:41 run_atlas
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas       105 Oct  6 19:41 job.xml
[2025-10-06 20:20:40] -rw-r--r--. 2 boincer umatlas 216559755 Oct  6 19:41 EVNT.46376901._004324.pool.root.1
[2025-10-06 20:20:40] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 19:41 start_atlas.sh
[2025-10-06 20:20:40] drwxrwx--x. 2 boincer umatlas      4096 Oct  6 19:41 shared
[2025-10-06 20:20:40] -rw-r--r--. 2 boincer umatlas    565603 Oct  6 19:41 input.tar.gz
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas         0 Oct  6 19:41 boinc_lockfile
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas      2521 Oct  6 19:41 pandaJob.out
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas    975012 Oct  6 19:41 agis_schedconf.cvmfs.json
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas   1560401 Oct  6 19:41 agis_ddmendpoints.agis.ALL.json
[2025-10-06 20:20:40] drwx------. 4 boincer umatlas      4096 Oct  6 19:41 pilot3
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas 171279673 Oct  6 20:18 HITS.46376905._116545.pool.root.1
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas       529 Oct  6 20:19 boinc_task_state.xml
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas      1033 Oct  6 20:19 memory_monitor_summary.json
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas    350178 Oct  6 20:19 log.46376905._116545.job.log.tgz.1
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas        95 Oct  6 20:19 pilot_heartbeat.json
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas      7161 Oct  6 20:20 init_data.xml
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas      7772 Oct  6 20:20 heartbeat.json
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas      8192 Oct  6 20:20 boinc_mmap_file
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas        27 Oct  6 20:20 wrapper_checkpoint.txt
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas       822 Oct  6 20:20 pilotlog.txt
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas    349242 Oct  6 20:20 log.46376905._116545.job.log.1
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas       357 Oct  6 20:20 output.list
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas       620 Oct  6 20:20 runtime_log
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas    716800 Oct  6 20:20 result.tar.gz
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas      8700 Oct  6 20:20 runtime_log.err
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas       650 Oct  6 20:20 4BYLDmVO5P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoHUNDm3k8vHn.diag
[2025-10-06 20:20:40] -rw-r--r--. 1 boincer umatlas     22296 Oct  6 20:20 stderr.txt
[2025-10-06 20:20:40] HITS file was successfully produced:
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas 171279673 Oct  6 20:18 shared/HITS.pool.root.1
[2025-10-06 20:20:40]  *** Contents of shared directory: ***
[2025-10-06 20:20:40] total 380036
[2025-10-06 20:20:40] -rw-r--r--. 2 boincer umatlas 216559755 Oct  6 19:41 ATLAS.root_0
[2025-10-06 20:20:40] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 19:41 start_atlas.sh
[2025-10-06 20:20:40] -rw-r--r--. 2 boincer umatlas    565603 Oct  6 19:41 input.tar.gz
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas 171279673 Oct  6 20:18 HITS.pool.root.1
[2025-10-06 20:20:40] -rw-------. 1 boincer umatlas    716800 Oct  6 20:20 result.tar.gz
20:20:41 (529425): run_atlas exited; CPU time 19129.703283
20:20:41 (529425): called boinc_finish(0)

</stderr_txt>
]]>

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