Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
02:56:37 (12893): wrapper (7.7.26015): starting
02:56:37 (12893): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 02:56:37] Arguments: --nthreads 8
[2025-10-07 02:56:37] Threads: 8
[2025-10-07 02:56:37] Checking for CVMFS
[2025-10-07 02:56:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 02:56:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 02:56:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 02:56:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 02:56:38] 2.11.0.0 5936 10961 74184 151417 2 187 4033836 4096000 762 130560 0 6350403 99.890 989914 225 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 02:56:38] CVMFS is ok
[2025-10-07 02:56:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 02:56:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 02:56:38] Further information can be found at the LHC@home message board.
[2025-10-07 02:56:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 02:56:38] Checking for apptainer binary...
[2025-10-07 02:56:38] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 02:56:38] apptainer is not installed, using version from CVMFS
[2025-10-07 02:56:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 02:56:38] WARNING: Environment variable TMPDIR already has value [/tmp/job_10283162/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node102
[2025-10-07 02:56:38] apptainer works
[2025-10-07 02:56:38] Set ATHENA_PROC_NUMBER=8
[2025-10-07 02:56:38] Set ATHENA_CORE_NUMBER=8
[2025-10-07 02:56:38] Starting ATLAS job with PandaID=6831947087
[2025-10-07 02:56:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10283162/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 03:37:51]  *** The last 200 lines of the pilot log: ***
[2025-10-07 03:37:51]  replicas=None
[2025-10-07 03:37:51]  scope=mc23_13p6TeV
[2025-10-07 03:37:51]  status=None
[2025-10-07 03:37:51]  status_code=0
[2025-10-07 03:37:51]  storage_token=
[2025-10-07 03:37:51]  surl=/tmp/job_10283162/atlas/pilot/slots/0/PanDA_Pilot-6831947087/log.46376905._094906.job.log.tgz.1
[2025-10-07 03:37:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/8f/log.46376905._094906.job.log.tgz.1
[2025-10-07 03:37:51]  workdir=None
[2025-10-07 03:37:51] ]
[2025-10-07 03:37:51] 2025-10-07 01:36:44,865 | INFO     | transferring file log.46376905._094906.job.log.tgz.1 from /tmp/job_10283162/atlas/pilot/slots/0/PanDA_Pilot-6831947087/log.46376905._094906.job.log.tgz.1 to /tmp/j
[2025-10-07 03:37:51] 2025-10-07 01:36:44,865 | INFO     | executing command: /usr/bin/env mv /tmp/job_10283162/atlas/pilot/slots/0/PanDA_Pilot-6831947087/log.46376905._094906.job.log.tgz.1 /tmp/job_10283162/atlas/pilot/sl
[2025-10-07 03:37:51] 2025-10-07 01:36:44,873 | INFO     | adding to output.list: log.46376905._094906.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/8f/log.46376905._094906.job.log.tg
[2025-10-07 03:37:51] 2025-10-07 01:36:44,874 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 03:37:51] 2025-10-07 01:36:44,874 | INFO     | summary of transferred files:
[2025-10-07 03:37:51] 2025-10-07 01:36:44,874 | INFO     |  -- lfn=log.46376905._094906.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 03:37:51] 2025-10-07 01:36:44,874 | INFO     | stage-out finished correctly
[2025-10-07 03:37:51] 2025-10-07 01:36:45,338 | INFO     | time since job start (2403s) is within the limit (172800.0s)
[2025-10-07 03:37:51] 2025-10-07 01:36:46,337 | WARNING  | process 2163 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 03:37:51] 2025-10-07 01:36:46,337 | INFO     | using path: /tmp/job_10283162/atlas/pilot/slots/0/PanDA_Pilot-6831947087/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 03:37:51] 2025-10-07 01:36:46,438 | INFO     | number of running child processes to parent process 2163: 1
[2025-10-07 03:37:51] 2025-10-07 01:36:46,438 | INFO     | maximum number of monitored processes: 6
[2025-10-07 03:37:51] 2025-10-07 01:36:47,319 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 03:37:51] 2025-10-07 01:36:47,347 | INFO     | time since job start (2405s) is within the limit (172800.0s)
[2025-10-07 03:37:51] 2025-10-07 01:36:47,369 | INFO     | job 6831947087 has state=finished
[2025-10-07 03:37:51] 2025-10-07 01:36:47,369 | INFO     | preparing for final server update for job 6831947087 in state='finished'
[2025-10-07 03:37:51] 2025-10-07 01:36:47,369 | INFO     | this job has now completed (state=finished)
[2025-10-07 03:37:51] 2025-10-07 01:36:47,369 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 03:37:51] 2025-10-07 01:36:47,369 | INFO     | log transfer has been attempted: DONE
[2025-10-07 03:37:51] 2025-10-07 01:36:47,369 | INFO     | job 6831947087 has finished - writing final server update
[2025-10-07 03:37:51] 2025-10-07 01:36:47,369 | INFO     | total number of processed events: 400 (read)
[2025-10-07 03:37:51] 2025-10-07 01:36:47,370 | INFO     | executing command: lscpu
[2025-10-07 03:37:51] 2025-10-07 01:36:47,399 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 03:37:51] 2025-10-07 01:36:48,941 | INFO     | monitor loop #181: job 0:6831947087 is in state 'finished'
[2025-10-07 03:37:51] 2025-10-07 01:36:48,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,357 | INFO     | time since job start (2407s) is within the limit (172800.0s)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,907 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 03:37:51] 2025-10-07 01:36:49,911 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2817.4816250000003
[2025-10-07 03:37:51] 2025-10-07 01:36:49,916 | INFO     | using path: /tmp/job_10283162/atlas/pilot/slots/0/PanDA_Pilot-6831947087/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,916 | INFO     | extracted standard info from prmon json
[2025-10-07 03:37:51] 2025-10-07 01:36:49,916 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 03:37:51] 2025-10-07 01:36:49,916 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 03:37:51] 2025-10-07 01:36:49,916 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 03:37:51] 2025-10-07 01:36:49,917 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 03:37:51] 2025-10-07 01:36:49,917 | INFO     | fitting pss+swap vs Time
[2025-10-07 03:37:51] 2025-10-07 01:36:49,917 | INFO     | sum of square deviations: 11133232.0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,917 | INFO     | sum of deviations: -619090769.0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,917 | INFO     | mean x: 1759799900.0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,917 | INFO     | mean y: 2540274.090909091
[2025-10-07 03:37:51] 2025-10-07 01:36:49,917 | INFO     | -- intersect: 97860545332.92047
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | intersect: 97860545332.92047
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | chi2: 0.0028943004596460207
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | -- intersect: 97860545332.92047
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | current memory leak: -55.61 B/s (using 33 data points, chi2=0.00)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | could have reported an average CPU frequency of 2702 MHz (5 samples)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | ..............................
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . Timing measurements:
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . get job = 0 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . initial setup = 1 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . payload setup = 2 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . stage-in = 0 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . payload execution = 2384 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . stage-out = 0 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | . log creation = 0 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,918 | INFO     | ..............................
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | 
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | job summary report
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | --------------------------------------------------
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | PanDA job id: 6831947087
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | task id: 46376905
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | errors: (none)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | pilot state: finished 
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | transexitcode: 0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | exeerrorcode: 0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | exeerrordiag: 
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | exitcode: 0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | exitmsg: OK
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | cpuconsumptiontime: 17199 s
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | nevents: 400
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | neventsw: 0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | pid: 2163
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | pgrp: 2163
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | corecount: 8
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | event service: False
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | sizes: {0: 2348942, 2: 2349204, 11: 2349232, 2389: 2383487, 2392: 2383487, 2394: 2383713}
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | --------------------------------------------------
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | 
[2025-10-07 03:37:51] 2025-10-07 01:36:49,968 | INFO     | executing command: ls -lF /tmp/job_10283162/atlas/pilot/slots/0
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,977 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,978 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,978 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 03:37:51] 2025-10-07 01:36:49,978 | INFO     | job 6831947087 has completed (purged errors)
[2025-10-07 03:37:51] 2025-10-07 01:36:49,978 | INFO     | overall cleanup function is called
[2025-10-07 03:37:51] 2025-10-07 01:36:50,984 | INFO     | --- collectZombieJob: --- 10, [2163]
[2025-10-07 03:37:51] 2025-10-07 01:36:50,984 | INFO     | zombie collector waiting for pid 2163
[2025-10-07 03:37:51] 2025-10-07 01:36:50,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 03:37:51] 2025-10-07 01:36:50,984 | INFO     | collected zombie processes
[2025-10-07 03:37:51] 2025-10-07 01:36:50,984 | INFO     | will attempt to kill all subprocesses of pid=2163
[2025-10-07 03:37:51] 2025-10-07 01:36:51,090 | INFO     | process IDs to be killed: [2163] (in reverse order)
[2025-10-07 03:37:51] 2025-10-07 01:36:51,128 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 03:37:51] 2025-10-07 01:36:51,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 03:37:51] 2025-10-07 01:36:51,132 | INFO     | did not find any defunct processes belonging to 2163
[2025-10-07 03:37:51] 2025-10-07 01:36:51,135 | INFO     | did not find any defunct processes belonging to 2163
[2025-10-07 03:37:51] 2025-10-07 01:36:51,135 | INFO     | ready for new job
[2025-10-07 03:37:51] 2025-10-07 01:36:51,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 03:37:51] 2025-10-07 01:36:51,135 | INFO     | ***************************************
[2025-10-07 03:37:51] 2025-10-07 01:36:51,136 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 03:37:51] 2025-10-07 01:36:51,136 | INFO     | ***************************************
[2025-10-07 03:37:51] 2025-10-07 01:36:51,136 | INFO     | 
[2025-10-07 03:37:51] 2025-10-07 01:36:51,149 | INFO     | architecture information:
[2025-10-07 03:37:51] 2025-10-07 01:36:51,150 | INFO     | executing command: cat /etc/os-release
[2025-10-07 03:37:51] 2025-10-07 01:36:51,156 | INFO     | cat /etc/os-release:
[2025-10-07 03:37:51] NAME="CentOS Linux"
[2025-10-07 03:37:51] VERSION="7 (Core)"
[2025-10-07 03:37:51] ID="centos"
[2025-10-07 03:37:51] ID_LIKE="rhel fedora"
[2025-10-07 03:37:51] VERSION_ID="7"
[2025-10-07 03:37:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 03:37:51] ANSI_COLOR="0;31"
[2025-10-07 03:37:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 03:37:51] HOME_URL="https://www.centos.org/"
[2025-10-07 03:37:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 03:37:51] 
[2025-10-07 03:37:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 03:37:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 03:37:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 03:37:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 03:37:51] 
[2025-10-07 03:37:51] 2025-10-07 01:36:51,156 | INFO     | ***************************************
[2025-10-07 03:37:51] 2025-10-07 01:36:51,659 | INFO     | executing command: df -mP /tmp/job_10283162/atlas/pilot/slots/0
[2025-10-07 03:37:51] 2025-10-07 01:36:51,665 | INFO     | sufficient remaining disk space (223776604160 B)
[2025-10-07 03:37:51] 2025-10-07 01:36:51,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 03:37:51] 2025-10-07 01:36:51,665 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 03:37:51] 2025-10-07 01:36:51,665 | INFO     | update_server=False
[2025-10-07 03:37:51] 2025-10-07 01:36:51,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 03:37:51] 2025-10-07 01:36:51,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 03:37:51] 2025-10-07 01:36:52,299 | INFO     | all job control threads have been joined
[2025-10-07 03:37:51] 2025-10-07 01:36:52,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 03:37:51] 2025-10-07 01:36:52,454 | INFO     | aborting loop
[2025-10-07 03:37:51] 2025-10-07 01:36:52,670 | INFO     | [job] retrieve thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:52,670 | INFO     | [job] queue monitor thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:52,749 | INFO     | all data control threads have been joined
[2025-10-07 03:37:51] 2025-10-07 01:36:52,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 03:37:51] 2025-10-07 01:36:52,950 | INFO     | all payload control threads have been joined
[2025-10-07 03:37:51] 2025-10-07 01:36:52,957 | INFO     | [payload] failed_post thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:52,987 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,304 | INFO     | [job] control thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 03:37:51] 2025-10-07 01:36:53,459 | INFO     | [job] job monitor thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,539 | INFO     | [payload] validate_post thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,667 | INFO     | [job] validate thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,754 | INFO     | [data] control thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,851 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,892 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:53,955 | INFO     | [payload] control thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:54,102 | INFO     | [data] copytool_in thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:54,943 | INFO     | [data] copytool_out thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:36:57,380 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:37:02,018 | INFO     | job.realtimelogging is not enabled
[2025-10-07 03:37:51] 2025-10-07 01:37:03,023 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 03:37:51] 2025-10-07 01:37:22,553 | INFO     | PID=17914 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 03:37:51] 2025-10-07 01:37:22,553 | INFO     | .. there are 6 such processes running
[2025-10-07 03:37:51] 2025-10-07 01:37:22,553 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 03:37:51] 2025-10-07 01:37:22,553 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 03:37:51] 2025-10-07 01:37:22,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 03:37:51] 2025-10-07 01:37:45,909 | INFO     | [monitor] cgroup control has ended
[2025-10-07 03:37:51] 2025-10-07 01:37:46,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060544768)>']
[2025-10-07 03:37:51] 2025-10-07 01:37:46,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 03:37:51] 2025-10-07 01:37:46,672 | INFO     | [monitor] control thread has ended
[2025-10-07 03:37:51] 2025-10-07 01:37:51,237 | INFO     | all workflow threads have been joined
[2025-10-07 03:37:51] 2025-10-07 01:37:51,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 03:37:51] 2025-10-07 01:37:51,238 | INFO     | traces error code: 0
[2025-10-07 03:37:51] 2025-10-07 01:37:51,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 03:37:51] 2025-10-07 01:37:51,292 [wrapper] ==== pilot stdout END ====
[2025-10-07 03:37:51] 2025-10-07 01:37:51,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 03:37:51] 2025-10-07 01:37:51,294 [wrapper] pilotpid: 17914
[2025-10-07 03:37:51] 2025-10-07 01:37:51,295 [wrapper] Pilot exit status: 0
[2025-10-07 03:37:51] 2025-10-07 01:37:51,299 [wrapper] pandaids: 6831947087
[2025-10-07 03:37:51] 2025-10-07 01:37:51,323 [wrapper] cleanup supervisor_pilot  3529 17915
[2025-10-07 03:37:51] 2025-10-07 01:37:51,324 [wrapper] Test setup, not cleaning
[2025-10-07 03:37:51] 2025-10-07 01:37:51,325 [wrapper] apfmon messages muted
[2025-10-07 03:37:51] 2025-10-07 01:37:51,326 [wrapper] ==== wrapper stdout END ====
[2025-10-07 03:37:51] 2025-10-07 01:37:51,327 [wrapper] ==== wrapper stderr END ====
[2025-10-07 03:37:51]  *** Error codes and diagnostics ***
[2025-10-07 03:37:51]     "exeErrorCode": 0,
[2025-10-07 03:37:51]     "exeErrorDiag": "",
[2025-10-07 03:37:51]     "pilotErrorCode": 0,
[2025-10-07 03:37:51]     "pilotErrorDiag": "",
[2025-10-07 03:37:51]  *** Listing of results directory ***
[2025-10-07 03:37:51] total 387348
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user    552446 Oct  5 21:50 pilot3.tar.gz
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      5112 Oct  5 22:13 queuedata.json
[2025-10-07 03:37:51] -rwx------ 1 mf493845 unix-user     36292 Oct  5 22:15 runpilot2-wrapper.sh
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user       100 Oct  7 02:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 03:37:51] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 02:02 run_atlas
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user       105 Oct  7 02:02 job.xml
[2025-10-07 03:37:51] -rw-r--r-- 2 mf493845 unix-user 213967757 Oct  7 02:56 EVNT.46376901._003499.pool.root.1
[2025-10-07 03:37:51] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:56 start_atlas.sh
[2025-10-07 03:37:51] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 02:56 shared
[2025-10-07 03:37:51] -rw-r--r-- 2 mf493845 unix-user    565604 Oct  7 02:56 input.tar.gz
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      6388 Oct  7 02:56 init_data.xml
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user         0 Oct  7 02:56 boinc_setup_complete
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      8192 Oct  7 02:56 boinc_mmap_file
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user         0 Oct  7 02:56 boinc_lockfile
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      2519 Oct  7 02:56 pandaJob.out
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user    974984 Oct  7 02:56 agis_schedconf.cvmfs.json
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user   1560401 Oct  7 02:56 agis_ddmendpoints.agis.ALL.json
[2025-10-07 03:37:51] drwx------ 4 mf493845 unix-user       400 Oct  7 02:56 pilot3
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user 177456198 Oct  7 03:36 HITS.46376905._094906.pool.root.1
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      1014 Oct  7 03:36 memory_monitor_summary.json
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user    286771 Oct  7 03:36 log.46376905._094906.job.log.tgz.1
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      7764 Oct  7 03:36 heartbeat.json
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user        95 Oct  7 03:37 pilot_heartbeat.json
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      4907 Oct  7 03:37 pilotlog.txt
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user    391838 Oct  7 03:37 log.46376905._094906.job.log.1
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user       357 Oct  7 03:37 output.list
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user       620 Oct  7 03:37 runtime_log
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user    696320 Oct  7 03:37 result.tar.gz
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user      9076 Oct  7 03:37 runtime_log.err
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user       642 Oct  7 03:37 q6gMDmdJkP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3PHMDmZNMgym.diag
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user     22282 Oct  7 03:37 stderr.txt
[2025-10-07 03:37:51] HITS file was successfully produced:
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user 177456198 Oct  7 03:36 shared/HITS.pool.root.1
[2025-10-07 03:37:51]  *** Contents of shared directory: ***
[2025-10-07 03:37:51] total 383508
[2025-10-07 03:37:51] -rw-r--r-- 2 mf493845 unix-user 213967757 Oct  7 02:56 ATLAS.root_0
[2025-10-07 03:37:51] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:56 start_atlas.sh
[2025-10-07 03:37:51] -rw-r--r-- 2 mf493845 unix-user    565604 Oct  7 02:56 input.tar.gz
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user 177456198 Oct  7 03:36 HITS.pool.root.1
[2025-10-07 03:37:51] -rw------- 1 mf493845 unix-user    696320 Oct  7 03:37 result.tar.gz
03:37:53 (12893): run_atlas exited; CPU time 17234.641199
03:37:53 (12893): called boinc_finish(0)

</stderr_txt>
]]>

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