Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
02:54:11 (27991): wrapper (7.7.26015): starting
02:54:11 (27991): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 02:54:11] Arguments: --nthreads 8
[2025-10-07 02:54:11] Threads: 8
[2025-10-07 02:54:11] Checking for CVMFS
[2025-10-07 02:54:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 02:54:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 02:54:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 02:54:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 02:54:11] 2.11.0.0 5592 10953 72036 151417 1 188 4053499 4096001 1799 130560 0 9394284 99.925 995337 262 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 02:54:11] CVMFS is ok
[2025-10-07 02:54:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 02:54:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 02:54:11] Further information can be found at the LHC@home message board.
[2025-10-07 02:54:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 02:54:11] Checking for apptainer binary...
[2025-10-07 02:54:11] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 02:54:11] apptainer is not installed, using version from CVMFS
[2025-10-07 02:54:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 02:54:11] WARNING: Environment variable TMPDIR already has value [/tmp/job_10283090/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node115
[2025-10-07 02:54:11] apptainer works
[2025-10-07 02:54:11] Set ATHENA_PROC_NUMBER=8
[2025-10-07 02:54:11] Set ATHENA_CORE_NUMBER=8
[2025-10-07 02:54:11] Starting ATLAS job with PandaID=6832864126
[2025-10-07 02:54:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10283090/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 03:34:39]  *** The last 200 lines of the pilot log: ***
[2025-10-07 03:34:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 03:34:39]  replicas=None
[2025-10-07 03:34:39]  scope=mc23_13p6TeV
[2025-10-07 03:34:39]  status=None
[2025-10-07 03:34:39]  status_code=0
[2025-10-07 03:34:39]  storage_token=
[2025-10-07 03:34:39]  surl=/tmp/job_10283090/atlas/pilot/slots/0/PanDA_Pilot-6832864126/log.46376905._117456.job.log.tgz.1
[2025-10-07 03:34:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/09/log.46376905._117456.job.log.tgz.1
[2025-10-07 03:34:39]  workdir=None
[2025-10-07 03:34:39] ]
[2025-10-07 03:34:39] 2025-10-07 01:34:02,868 | INFO     | transferring file log.46376905._117456.job.log.tgz.1 from /tmp/job_10283090/atlas/pilot/slots/0/PanDA_Pilot-6832864126/log.46376905._117456.job.log.tgz.1 to /tmp/j
[2025-10-07 03:34:39] 2025-10-07 01:34:02,868 | INFO     | executing command: /usr/bin/env mv /tmp/job_10283090/atlas/pilot/slots/0/PanDA_Pilot-6832864126/log.46376905._117456.job.log.tgz.1 /tmp/job_10283090/atlas/pilot/sl
[2025-10-07 03:34:39] 2025-10-07 01:34:02,876 | INFO     | adding to output.list: log.46376905._117456.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/09/log.46376905._117456.job.log.tg
[2025-10-07 03:34:39] 2025-10-07 01:34:02,876 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 03:34:39] 2025-10-07 01:34:02,876 | INFO     | summary of transferred files:
[2025-10-07 03:34:39] 2025-10-07 01:34:02,876 | INFO     |  -- lfn=log.46376905._117456.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 03:34:39] 2025-10-07 01:34:02,877 | INFO     | stage-out finished correctly
[2025-10-07 03:34:39] 2025-10-07 01:34:02,925 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 03:34:39] 2025-10-07 01:34:03,214 | INFO     | PID=667 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-07 03:34:39] 2025-10-07 01:34:03,214 | INFO     | .. there are 7 such processes running
[2025-10-07 03:34:39] 2025-10-07 01:34:04,214 | INFO     | time since job start (2388s) is within the limit (172800.0s)
[2025-10-07 03:34:39] 2025-10-07 01:34:04,483 | INFO     | job 6832864126 has state=finished
[2025-10-07 03:34:39] 2025-10-07 01:34:04,483 | INFO     | preparing for final server update for job 6832864126 in state='finished'
[2025-10-07 03:34:39] 2025-10-07 01:34:04,484 | INFO     | this job has now completed (state=finished)
[2025-10-07 03:34:39] 2025-10-07 01:34:04,484 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 03:34:39] 2025-10-07 01:34:04,484 | INFO     | log transfer has been attempted: DONE
[2025-10-07 03:34:39] 2025-10-07 01:34:04,484 | INFO     | job 6832864126 has finished - writing final server update
[2025-10-07 03:34:39] 2025-10-07 01:34:04,484 | INFO     | total number of processed events: 400 (read)
[2025-10-07 03:34:39] 2025-10-07 01:34:04,484 | INFO     | executing command: lscpu
[2025-10-07 03:34:39] 2025-10-07 01:34:04,513 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 03:34:39] 2025-10-07 01:34:05,360 | WARNING  | process 17658 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 03:34:39] 2025-10-07 01:34:05,361 | INFO     | using path: /tmp/job_10283090/atlas/pilot/slots/0/PanDA_Pilot-6832864126/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 03:34:39] 2025-10-07 01:34:05,477 | INFO     | number of running child processes to parent process 17658: 1
[2025-10-07 03:34:39] 2025-10-07 01:34:05,477 | INFO     | maximum number of monitored processes: 6
[2025-10-07 03:34:39] 2025-10-07 01:34:06,166 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 03:34:39] 2025-10-07 01:34:06,170 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3016.628437500001
[2025-10-07 03:34:39] 2025-10-07 01:34:06,175 | INFO     | using path: /tmp/job_10283090/atlas/pilot/slots/0/PanDA_Pilot-6832864126/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 03:34:39] 2025-10-07 01:34:06,175 | INFO     | extracted standard info from prmon json
[2025-10-07 03:34:39] 2025-10-07 01:34:06,175 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 03:34:39] 2025-10-07 01:34:06,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 03:34:39] 2025-10-07 01:34:06,175 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | fitting pss+swap vs Time
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | sum of square deviations: 10150888.0
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | sum of deviations: -281059818.0
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | mean x: 1759799723.5
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | mean y: 2520974.625
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | -- intersect: 48728207831.12074
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | intersect: 48728207831.12074
[2025-10-07 03:34:39] 2025-10-07 01:34:06,176 | INFO     | chi2: 0.001478754661102056
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | -- intersect: 48728207831.12074
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | current memory leak: -27.69 B/s (using 32 data points, chi2=0.00)
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | could have reported an average CPU frequency of 2741 MHz (5 samples)
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | ..............................
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . Timing measurements:
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . get job = 0 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . initial setup = 1 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . payload setup = 2 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . stage-in = 0 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . payload execution = 2366 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . stage-out = 0 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | . log creation = 0 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,177 | INFO     | ..............................
[2025-10-07 03:34:39] 2025-10-07 01:34:06,224 | INFO     | time since job start (2390s) is within the limit (172800.0s)
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | 
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | job summary report
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | --------------------------------------------------
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | PanDA job id: 6832864126
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | task id: 46376905
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | errors: (none)
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | pilot state: finished 
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | transexitcode: 0
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | exeerrorcode: 0
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | exeerrordiag: 
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | exitcode: 0
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | exitmsg: OK
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | cpuconsumptiontime: 17112 s
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | nevents: 400
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | neventsw: 0
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | pid: 17658
[2025-10-07 03:34:39] 2025-10-07 01:34:06,666 | INFO     | pgrp: 17658
[2025-10-07 03:34:39] 2025-10-07 01:34:06,667 | INFO     | corecount: 8
[2025-10-07 03:34:39] 2025-10-07 01:34:06,667 | INFO     | event service: False
[2025-10-07 03:34:39] 2025-10-07 01:34:06,667 | INFO     | sizes: {0: 2348945, 1: 2348945, 2: 2349235, 11: 2349263, 2372: 2374493, 2374: 2383705, 2377: 2383875}
[2025-10-07 03:34:39] 2025-10-07 01:34:06,667 | INFO     | --------------------------------------------------
[2025-10-07 03:34:39] 2025-10-07 01:34:06,667 | INFO     | 
[2025-10-07 03:34:39] 2025-10-07 01:34:06,667 | INFO     | executing command: ls -lF /tmp/job_10283090/atlas/pilot/slots/0
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 03:34:39] 2025-10-07 01:34:06,676 | INFO     | job 6832864126 has completed (purged errors)
[2025-10-07 03:34:39] 2025-10-07 01:34:06,676 | INFO     | overall cleanup function is called
[2025-10-07 03:34:39] 2025-10-07 01:34:07,681 | INFO     | --- collectZombieJob: --- 10, [17658]
[2025-10-07 03:34:39] 2025-10-07 01:34:07,681 | INFO     | zombie collector waiting for pid 17658
[2025-10-07 03:34:39] 2025-10-07 01:34:07,682 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 03:34:39] 2025-10-07 01:34:07,682 | INFO     | collected zombie processes
[2025-10-07 03:34:39] 2025-10-07 01:34:07,682 | INFO     | will attempt to kill all subprocesses of pid=17658
[2025-10-07 03:34:39] 2025-10-07 01:34:07,794 | INFO     | process IDs to be killed: [17658] (in reverse order)
[2025-10-07 03:34:39] 2025-10-07 01:34:07,835 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 03:34:39] 2025-10-07 01:34:07,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 03:34:39] 2025-10-07 01:34:07,839 | INFO     | did not find any defunct processes belonging to 17658
[2025-10-07 03:34:39] 2025-10-07 01:34:07,842 | INFO     | did not find any defunct processes belonging to 17658
[2025-10-07 03:34:39] 2025-10-07 01:34:07,842 | INFO     | ready for new job
[2025-10-07 03:34:39] 2025-10-07 01:34:07,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 03:34:39] 2025-10-07 01:34:07,843 | INFO     | ***************************************
[2025-10-07 03:34:39] 2025-10-07 01:34:07,843 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 03:34:39] 2025-10-07 01:34:07,843 | INFO     | ***************************************
[2025-10-07 03:34:39] 2025-10-07 01:34:07,843 | INFO     | 
[2025-10-07 03:34:39] 2025-10-07 01:34:07,857 | INFO     | architecture information:
[2025-10-07 03:34:39] 2025-10-07 01:34:07,857 | INFO     | executing command: cat /etc/os-release
[2025-10-07 03:34:39] 2025-10-07 01:34:07,863 | INFO     | cat /etc/os-release:
[2025-10-07 03:34:39] NAME="CentOS Linux"
[2025-10-07 03:34:39] VERSION="7 (Core)"
[2025-10-07 03:34:39] ID="centos"
[2025-10-07 03:34:39] ID_LIKE="rhel fedora"
[2025-10-07 03:34:39] VERSION_ID="7"
[2025-10-07 03:34:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 03:34:39] ANSI_COLOR="0;31"
[2025-10-07 03:34:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 03:34:39] HOME_URL="https://www.centos.org/"
[2025-10-07 03:34:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 03:34:39] 
[2025-10-07 03:34:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 03:34:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 03:34:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 03:34:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 03:34:39] 
[2025-10-07 03:34:39] 2025-10-07 01:34:07,863 | INFO     | ***************************************
[2025-10-07 03:34:39] 2025-10-07 01:34:08,366 | INFO     | executing command: df -mP /tmp/job_10283090/atlas/pilot/slots/0
[2025-10-07 03:34:39] 2025-10-07 01:34:08,371 | INFO     | sufficient remaining disk space (222822400000 B)
[2025-10-07 03:34:39] 2025-10-07 01:34:08,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 03:34:39] 2025-10-07 01:34:08,372 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 03:34:39] 2025-10-07 01:34:08,372 | INFO     | update_server=False
[2025-10-07 03:34:39] 2025-10-07 01:34:08,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 03:34:39] 2025-10-07 01:34:08,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 03:34:39] 2025-10-07 01:34:08,466 | INFO     | all job control threads have been joined
[2025-10-07 03:34:39] 2025-10-07 01:34:08,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 03:34:39] 2025-10-07 01:34:08,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 03:34:39] 2025-10-07 01:34:08,985 | INFO     | aborting loop
[2025-10-07 03:34:39] 2025-10-07 01:34:09,377 | INFO     | [job] retrieve thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:09,403 | INFO     | all data control threads have been joined
[2025-10-07 03:34:39] 2025-10-07 01:34:09,471 | INFO     | [job] control thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:09,497 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:09,498 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:09,739 | INFO     | all payload control threads have been joined
[2025-10-07 03:34:39] 2025-10-07 01:34:09,766 | INFO     | [data] copytool_in thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:09,916 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:09,990 | INFO     | [job] job monitor thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:10,408 | INFO     | [data] control thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:10,437 | INFO     | [data] copytool_out thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:10,463 | INFO     | [payload] validate_post thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:10,687 | INFO     | [payload] failed_post thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:10,744 | INFO     | [payload] control thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:10,775 | INFO     | [job] validate thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:11,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 03:34:39] 2025-10-07 01:34:12,241 | INFO     | [job] queue monitor thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:12,986 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:18,534 | INFO     | job.realtimelogging is not enabled
[2025-10-07 03:34:39] 2025-10-07 01:34:19,539 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 03:34:39] 2025-10-07 01:34:19,755 | INFO     | [monitor] cgroup control has ended
[2025-10-07 03:34:39] 2025-10-07 01:34:20,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056342272)>']
[2025-10-07 03:34:39] 2025-10-07 01:34:25,117 | INFO     | all workflow threads have been joined
[2025-10-07 03:34:39] 2025-10-07 01:34:25,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 03:34:39] 2025-10-07 01:34:25,118 | INFO     | traces error code: 0
[2025-10-07 03:34:39] 2025-10-07 01:34:25,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 03:34:39] 2025-10-07 01:34:39,427 | INFO     | PID=667 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-07 03:34:39] 2025-10-07 01:34:39,428 | INFO     | .. there are 7 such processes running
[2025-10-07 03:34:39] 2025-10-07 01:34:39,428 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 03:34:39] 2025-10-07 01:34:39,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 03:34:39] 2025-10-07 01:34:39,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 03:34:39] 2025-10-07 01:34:39,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 03:34:39] 2025-10-07 01:34:39,428 | INFO     | [monitor] control thread has ended
[2025-10-07 03:34:39] 2025-10-07 01:34:39,480 [wrapper] ==== pilot stdout END ====
[2025-10-07 03:34:39] 2025-10-07 01:34:39,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 03:34:39] 2025-10-07 01:34:39,482 [wrapper] pilotpid: 667
[2025-10-07 03:34:39] 2025-10-07 01:34:39,484 [wrapper] Pilot exit status: 0
[2025-10-07 03:34:39] 2025-10-07 01:34:39,488 [wrapper] pandaids: 6832864126
[2025-10-07 03:34:39] 2025-10-07 01:34:39,513 [wrapper] cleanup supervisor_pilot  3666 668
[2025-10-07 03:34:39] 2025-10-07 01:34:39,514 [wrapper] Test setup, not cleaning
[2025-10-07 03:34:39] 2025-10-07 01:34:39,515 [wrapper] apfmon messages muted
[2025-10-07 03:34:39] 2025-10-07 01:34:39,516 [wrapper] ==== wrapper stdout END ====
[2025-10-07 03:34:39] 2025-10-07 01:34:39,517 [wrapper] ==== wrapper stderr END ====
[2025-10-07 03:34:39]  *** Error codes and diagnostics ***
[2025-10-07 03:34:39]     "exeErrorCode": 0,
[2025-10-07 03:34:39]     "exeErrorDiag": "",
[2025-10-07 03:34:39]     "pilotErrorCode": 0,
[2025-10-07 03:34:39]     "pilotErrorDiag": "",
[2025-10-07 03:34:39]  *** Listing of results directory ***
[2025-10-07 03:34:39] total 384820
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user    552446 Oct  6 21:11 pilot3.tar.gz
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user      5112 Oct  6 21:25 queuedata.json
[2025-10-07 03:34:39] -rwx------ 1 mf493845 unix-user     36292 Oct  6 21:27 runpilot2-wrapper.sh
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user       100 Oct  7 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 03:34:39] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 02:00 run_atlas
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user       105 Oct  7 02:00 job.xml
[2025-10-07 03:34:39] -rw-r--r-- 2 mf493845 unix-user 212576736 Oct  7 02:54 EVNT.46376901._004361.pool.root.1
[2025-10-07 03:34:39] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:54 start_atlas.sh
[2025-10-07 03:34:39] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 02:54 shared
[2025-10-07 03:34:39] -rw-r--r-- 2 mf493845 unix-user    565603 Oct  7 02:54 input.tar.gz
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user      6389 Oct  7 02:54 init_data.xml
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user         0 Oct  7 02:54 boinc_setup_complete
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user      8192 Oct  7 02:54 boinc_mmap_file
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user         0 Oct  7 02:54 boinc_lockfile
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user      2520 Oct  7 02:54 pandaJob.out
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user    974984 Oct  7 02:54 agis_schedconf.cvmfs.json
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user   1560401 Oct  7 02:54 agis_ddmendpoints.agis.ALL.json
[2025-10-07 03:34:39] drwx------ 4 mf493845 unix-user       400 Oct  7 02:54 pilot3
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user 176267196 Oct  7 03:33 HITS.46376905._117456.pool.root.1
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user        95 Oct  7 03:33 pilot_heartbeat.json
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user      1014 Oct  7 03:33 memory_monitor_summary.json
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user    288322 Oct  7 03:34 log.46376905._117456.job.log.tgz.1
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user      7770 Oct  7 03:34 heartbeat.json
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user       818 Oct  7 03:34 pilotlog.txt
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user    390098 Oct  7 03:34 log.46376905._117456.job.log.1
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user       357 Oct  7 03:34 output.list
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user       620 Oct  7 03:34 runtime_log
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user    696320 Oct  7 03:34 result.tar.gz
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user       642 Oct  7 03:34 VaqMDmi25P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3QUNDmIP5h3n.diag
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user      9076 Oct  7 03:34 runtime_log.err
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user     22387 Oct  7 03:34 stderr.txt
[2025-10-07 03:34:39] HITS file was successfully produced:
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user 176267196 Oct  7 03:33 shared/HITS.pool.root.1
[2025-10-07 03:34:39]  *** Contents of shared directory: ***
[2025-10-07 03:34:39] total 380984
[2025-10-07 03:34:39] -rw-r--r-- 2 mf493845 unix-user 212576736 Oct  7 02:54 ATLAS.root_0
[2025-10-07 03:34:39] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:54 start_atlas.sh
[2025-10-07 03:34:39] -rw-r--r-- 2 mf493845 unix-user    565603 Oct  7 02:54 input.tar.gz
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user 176267196 Oct  7 03:33 HITS.pool.root.1
[2025-10-07 03:34:39] -rw------- 1 mf493845 unix-user    696320 Oct  7 03:34 result.tar.gz
03:34:40 (27991): run_atlas exited; CPU time 17148.618201
03:34:40 (27991): called boinc_finish(0)

</stderr_txt>
]]>

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